-
2
-
-
0035748996
-
Comparison of performance in successive CASP experiments
-
Vencloves C, Zelma A, Fidelis K, Moult J. Comparison of performance in successive CASP experiments. Proteins 2001;5:163-170.
-
(2001)
Proteins
, vol.5
, pp. 163-170
-
-
Vencloves, C.1
Zelma, A.2
Fidelis, K.3
Moult, J.4
-
4
-
-
0034677669
-
Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores
-
Wilson C, Kreychman J, Gerstein M. Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores. J Mol Biol 2000;297:233-249.
-
(2000)
J Mol Biol
, vol.297
, pp. 233-249
-
-
Wilson, C.1
Kreychman, J.2
Gerstein, M.3
-
5
-
-
0033609902
-
Evolution of protein sequences and structures
-
Wood TC, Pearson WR. Evolution of protein sequences and structures. J Mol Biol 1999;291:977-995.
-
(1999)
J Mol Biol
, vol.291
, pp. 977-995
-
-
Wood, T.C.1
Pearson, W.R.2
-
6
-
-
0031966808
-
Reconstruction of amino acid biosynthesis pathways from the complete genome sequence
-
Bono H, Ogata H, Goto S, Kanehisa M. Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. Genome Res 1998;8:203-210.
-
(1998)
Genome Res
, vol.8
, pp. 203-210
-
-
Bono, H.1
Ogata, H.2
Goto, S.3
Kanehisa, M.4
-
7
-
-
0033382609
-
Functional genomics and enzyme evolution: Homologous and analogous enzymes encoded in microbial genomes
-
Galperin MY, Koonin EV. Functional genomics and enzyme evolution: homologous and analogous enzymes encoded in microbial genomes. Genetica 1999;106:159-170.
-
(1999)
Genetica
, vol.106
, pp. 159-170
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
8
-
-
0033215210
-
Pathway alignment: Application to the comparative analysis of glycolytic enzymes
-
Dandekar T, Schuster S, Snel B, Huynen M, Bork P. Pathway alignment: application to the comparative analysis of glycolytic enzymes. Biochem J 1999;343:115-124.
-
(1999)
Biochem J
, vol.343
, pp. 115-124
-
-
Dandekar, T.1
Schuster, S.2
Snel, B.3
Huynen, M.4
Bork, P.5
-
9
-
-
0032744302
-
Evolution of metabolisms: A new method for the comparison of metabolic pathways using genomics information
-
Forst CV, Schulten K. Evolution of metabolisms: a new method for the comparison of metabolic pathways using genomics information. J Comput Biol 1999;6:343-360.
-
(1999)
J Comput Biol
, vol.6
, pp. 343-360
-
-
Forst, C.V.1
Schulten, K.2
-
10
-
-
0034667776
-
A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters
-
Ogata H, Fujibuchi W, Goto S, Kanehisa M. A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. Nucleic Acids Res 2000;28:4021-4028.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4021-4028
-
-
Ogata, H.1
Fujibuchi, W.2
Goto, S.3
Kanehisa, M.4
-
11
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M. Goto S, KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000;28:27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
12
-
-
0033819550
-
Measuring shifts in function and evolutionary opportunity using variability profiles: A case study of the globins
-
Naylor GJ, Gerstein M. Measuring shifts in function and evolutionary opportunity using variability profiles: a case study of the globins. J Mol Evol 2000;51:223-233.
-
(2000)
J Mol Evol
, vol.51
, pp. 223-233
-
-
Naylor, G.J.1
Gerstein, M.2
-
13
-
-
0034854206
-
Sequence-structure analysis of FAD-containing proteins
-
Dym O, Eisenberg D. Sequence-structure analysis of FAD-containing proteins. Protein Sci 2001;10:1718-1728.
-
(2001)
Protein Sci
, vol.10
, pp. 1718-1728
-
-
Dym, O.1
Eisenberg, D.2
-
14
-
-
0032214622
-
Protein Data Bank (PDB): Database of three-dimensional structural information of biological macromolecules
-
Sussman JL, Lin LD, Jiang J, Manning NO, Prilusky J, Ritter O, Abola EE. Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules. Acta Crystallogr D Biol Crystallogr 1998;54:1078-1084.
-
(1998)
Acta Crystallogr D Biol Crystallogr
, vol.54
, pp. 1078-1084
-
-
Sussman, J.L.1
Lin, L.D.2
Jiang, J.3
Manning, N.O.4
Prilusky, J.5
Ritter, O.6
Abola, E.E.7
-
15
-
-
0030589514
-
Phi/psi-chology: Ramachandran revisited
-
Kleywegt GJ, Jones TA. Phi/psi-chology: Ramachandran revisited. Structure 1996;4:1395-1400.
-
(1996)
Structure
, vol.4
, pp. 1395-1400
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
17
-
-
0035853280
-
Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins
-
Landgraf R, Xanarios I, Eisenberg D. Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. J Mol Biol 2001;307:1487-1502.
-
(2001)
J Mol Biol
, vol.307
, pp. 1487-1502
-
-
Landgraf, R.1
Xanarios, I.2
Eisenberg, D.3
-
18
-
-
0027136282
-
Comparative protein modeling by satisfaction of spatial restraints
-
Sali A, Blundell TL. Comparative protein modeling by satisfaction of spatial restraints. J Mol Biol 1993;234:779-815.
-
(1993)
J Mol Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
19
-
-
0031938039
-
Comprehensive assessment of automatic structural alignment against a manual standard, the SCOP classivication of proteins
-
Gerstein M, Levitt M. Comprehensive assessment of automatic structural alignment against a manual standard, the SCOP classivication of proteins. Protein Sci 1998;10:445-456.
-
(1998)
Protein Sci
, vol.10
, pp. 445-456
-
-
Gerstein, M.1
Levitt, M.2
-
20
-
-
0035965144
-
Unusual molecular architecture of the Yersinia pestis cytotoxin yopm: A leucine-rich repeat protein with the shortest repeating unit
-
Evdokimov AG, Anderson DE, Routzahn KM, Waugh DS. Unusual molecular architecture of the Yersinia pestis cytotoxin yopm: a leucine-rich repeat protein with the shortest repeating unit. J Mol Biol 2001;312:807-821.
-
(2001)
J Mol Biol
, vol.312
, pp. 807-821
-
-
Evdokimov, A.G.1
Anderson, D.E.2
Routzahn, K.M.3
Waugh, D.S.4
-
21
-
-
0036901525
-
Structure of monomeric isocitrate dehydrogenase: Evidence of a protein monomerization by a domain duplication
-
Yasutake Y, Watanabe S, Yao M, Takada Y, Fukunaga N, Tanaka I. Structure of monomeric isocitrate dehydrogenase: evidence of a protein monomerization by a domain duplication. Structure 2002;10:1637-1648.
-
(2002)
Structure
, vol.10
, pp. 1637-1648
-
-
Yasutake, Y.1
Watanabe, S.2
Yao, M.3
Takada, Y.4
Fukunaga, N.5
Tanaka, I.6
-
22
-
-
0034099657
-
Identification of an archaeal 2-hydroxy acid dehydrogenase catalyzing reactions involved in coenzyme biosynthesis in methanoarchaea
-
Graupner M, Xu H, White RH. Identification of an archaeal 2-hydroxy acid dehydrogenase catalyzing reactions involved in coenzyme biosynthesis in methanoarchaea. J Bacteriol 2000;182:3688-3692.
-
(2000)
J Bacteriol
, vol.182
, pp. 3688-3692
-
-
Graupner, M.1
Xu, H.2
White, R.H.3
-
23
-
-
0036249007
-
Potential of fumarate reductase as a novel therapeutic target in Helicobacter pylori infection
-
Ge Z. Potential of fumarate reductase as a novel therapeutic target in Helicobacter pylori infection. Expert Opin Ther Targets 2002;6:135-146.
-
(2002)
Expert Opin Ther Targets
, vol.6
, pp. 135-146
-
-
Ge, Z.1
-
24
-
-
0036066808
-
Growth of Campylobacter jejuni supported by respiration of fumarate, nitrate, nitrite, trimethylamine-n-oxide, or dimethyl sulfoxide requires oxygen
-
Sellars MJ, Hall SJ, Kelly DJ. Growth of Campylobacter jejuni supported by respiration of fumarate, nitrate, nitrite, trimethylamine-n-oxide, or dimethyl sulfoxide requires oxygen. J Bacteriol 2002;184:4187-4196.
-
(2002)
J Bacteriol
, vol.184
, pp. 4187-4196
-
-
Sellars, M.J.1
Hall, S.J.2
Kelly, D.J.3
-
25
-
-
0010049951
-
Structure of fumarate reductase from Wolinella succinogenes at 2.2 Å resolution
-
Lancaster CR, Kroger A, Auer M, Michel H. Structure of fumarate reductase from Wolinella succinogenes at 2.2 Å resolution. Nature 1999;402:377-385.
-
(1999)
Nature
, vol.402
, pp. 377-385
-
-
Lancaster, C.R.1
Kroger, A.2
Auer, M.3
Michel, H.4
-
26
-
-
0035903166
-
Structural analyses of a malate dehydrogenase with a variable active site
-
Bell JK, Yennawar HP, Wright SK, Thompson JR, Viola RE, Banaszak LJ. Structural analyses of a malate dehydrogenase with a variable active site. J Biol Chem 2001;276:31156-31162.
-
(2001)
J Biol Chem
, vol.276
, pp. 31156-31162
-
-
Bell, J.K.1
Yennawar, H.P.2
Wright, S.K.3
Thompson, J.R.4
Viola, R.E.5
Banaszak, L.J.6
-
27
-
-
0035854744
-
Crystal structure of Bacillus subtilis isocitrate dehydrogenase at 1.55 Å: Insights into the nature of substrate specificity exhibited by Escherichia coli isocitrate dehydrogenase kinase/phosphatase
-
Singh SK, Matsuno K, LaPorte DC, Banaszak LJ. Crystal structure of Bacillus subtilis isocitrate dehydrogenase at 1.55 Å: insights into the nature of substrate specificity exhibited by Escherichia coli isocitrate dehydrogenase kinase/phosphatase. J Biol Chem 2001;276:26154-26163.
-
(2001)
J Biol Chem
, vol.276
, pp. 26154-26163
-
-
Singh, S.K.1
Matsuno, K.2
LaPorte, D.C.3
Banaszak, L.J.4
-
28
-
-
0028670472
-
Crystal structure of fructose-1,6-bisphosphatase complexed with fructose 2,6-bisphosphate, amp, andZn2+ at 2.0-Å resolution: Aspects of synergism between inhibitors
-
Xue Y, Huang S, Liang JY, Zhang Y, Lipscomb WN. Crystal structure of fructose-1,6-bisphosphatase complexed with fructose 2,6-bisphosphate, amp, andZn2+ at 2.0-Å resolution: aspects of synergism between inhibitors. Proc Natl Acad Sci USA 1994;91:12482-12486.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 12482-12486
-
-
Xue, Y.1
Huang, S.2
Liang, J.Y.3
Zhang, Y.4
Lipscomb, W.N.5
|