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Volumn 21, Issue 4, 2004, Pages 351-365

A new approach to species determination for yeast strains: DNA microarray-based comparative genomic hybridization using a yeast DNA microarray with 6000 genes

Author keywords

Comparative genomic hybridization; DNA microarray; Saccharomyces; Species determination

Indexed keywords

FUNGAL DNA;

EID: 1842420386     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/yea.1103     Document Type: Article
Times cited : (19)

References (37)
  • 1
    • 0030199511 scopus 로고    scopus 로고
    • Phylogenetic relationships of species of the genus Saccharomyces Meyen ex Reess deduced from partial base sequences of 18S and 26S ribosomal RNAs (Saccharomycetaceae)
    • Ando S, Mikata K, Tahara Y, Yamada Y. 1996. Phylogenetic relationships of species of the genus Saccharomyces Meyen ex Reess deduced from partial base sequences of 18S and 26S ribosomal RNAs (Saccharomycetaceae). Biosci Biotechnol Biochem 60: 1070-1075.
    • (1996) Biosci. Biotechnol. Biochem. , vol.60 , pp. 1070-1075
    • Ando, S.1    Mikata, K.2    Tahara, Y.3    Yamada, Y.4
  • 2
    • 0035144157 scopus 로고    scopus 로고
    • Portable system for microbial sample preparation and oligonucleotide microarray analysis
    • Bavykin SG, Akowski JP, Zakhariev VM, et al. 2001. Portable system for microbial sample preparation and oligonucleotide microarray analysis. Appl Environ Microbiol 67: 922-928.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 922-928
    • Bavykin, S.G.1    Akowski, J.P.2    Zakhariev, V.M.3
  • 3
    • 0033612136 scopus 로고    scopus 로고
    • Comparative genomics of BCG vaccines by whole-genome DNA microarray
    • Behr MA, Wilson MA, Gill WP, et al. 1999. Comparative genomics of BCG vaccines by whole-genome DNA microarray. Science 284: 1520-1523.
    • (1999) Science , vol.284 , pp. 1520-1523
    • Behr, M.A.1    Wilson, M.A.2    Gill, W.P.3
  • 4
    • 0032919458 scopus 로고    scopus 로고
    • Options available - From start to finish - For obtaining expression data by microarray
    • Bowtell DD. 1999. Options available - from start to finish - for obtaining expression data by microarray. Nature Genet 21(suppl 1): 25-32.
    • (1999) Nature Genet. , vol.21 , Issue.SUPPL. 1 , pp. 25-32
    • Bowtell, D.D.1
  • 5
    • 0032579440 scopus 로고    scopus 로고
    • Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful of strains and plasmids for PCR-mediated gene disruption and other applications
    • Brachmann CB, Davies A, Cost GJ, et al. 1998. Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14: 115-132.
    • (1998) Yeast , vol.14 , pp. 115-132
    • Brachmann, C.B.1    Davies, A.2    Cost, G.J.3
  • 6
    • 0032608229 scopus 로고    scopus 로고
    • Making and reading microarrays
    • Cheung VG, Morley M, Aguilar F, et al. 1999. Making and reading microarrays. Nature Genet 21(suppl 1): 15-19.
    • (1999) Nature Genet. , vol.21 , Issue.SUPPL. 1 , pp. 15-19
    • Cheung, V.G.1    Morley, M.2    Aguilar, F.3
  • 7
    • 0035433897 scopus 로고    scopus 로고
    • Bacterial species determination from DNA-DNA hybridization by using genome fragments and DNA microarrays
    • Cho JC, Tiedje JM. 2001. Bacterial species determination from DNA-DNA hybridization by using genome fragments and DNA microarrays. Appl Environ Microbiol 67: 3677-3682.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 3677-3682
    • Cho, J.C.1    Tiedje, J.M.2
  • 8
    • 0036193078 scopus 로고    scopus 로고
    • Quantitative detection of microbial genes by using DNA microarrays
    • Cho JC, Tiedje JM. 2002. Quantitative detection of microbial genes by using DNA microarrays. Appl Environ Microbiol 68: 1425-1430.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1425-1430
    • Cho, J.C.1    Tiedje, J.M.2
  • 9
    • 0035318378 scopus 로고    scopus 로고
    • Genomic interspecies microarray hybridization: Rapid discovery of 3000 genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames
    • Dong Y, Glasner JD, Blattner FR, Triplett EW. 2001. Genomic interspecies microarray hybridization: Rapid discovery of 3000 genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames. Appl Environ Microbiol 67: 1911-1921.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1911-1921
    • Dong, Y.1    Glasner, J.D.2    Blattner, F.R.3    Triplett, E.W.4
  • 10
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution well as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki T, Hashimoro Y, Yabuuchi E. 1989. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution well as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39: 224-229.
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoro, Y.2    Yabuuchi, E.3
  • 12
    • 0034662603 scopus 로고    scopus 로고
    • Comparative genomic hybridization analysis of 38 breast cancer cell lines: A basis for interpreting complementary DNA microarray data
    • Forozan F, Mahlamaki EH, Monni O, et al. 2000. Comparative genomic hybridization analysis of 38 breast cancer cell lines: A basis for interpreting complementary DNA microarray data. Cancer Res 60: 4519-4525.
    • (2000) Cancer Res. , vol.60 , pp. 4519-4525
    • Forozan, F.1    Mahlamaki, E.H.2    Monni, O.3
  • 13
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox GE, Wisotzkey JD, Jurtshuk P. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42: 166-170.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 14
    • 0031803670 scopus 로고    scopus 로고
    • Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays
    • Gingeras TR, Ghandour G, Wang E, et al. 1998. Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays. Genome Res 8: 435-448.
    • (1998) Genome Res. , vol.8 , pp. 435-448
    • Gingeras, T.R.1    Ghandour, G.2    Wang, E.3
  • 16
    • 0032434673 scopus 로고    scopus 로고
    • Evaluation of a microplate DNA-DNA hybridization method compared with the initial denaturation method
    • Goris J, Suzuki K, De Vos P, Nakase T, Kersters K. 1998. Evaluation of a microplate DNA-DNA hybridization method compared with the initial denaturation method. Can J Microbiol 44: 1148-1153.
    • (1998) Can. J. Microbiol. , vol.44 , pp. 1148-1153
    • Goris, J.1    Suzuki, K.2    De Vos, P.3    Nakase, T.4    Kersters, K.5
  • 17
    • 0030933625 scopus 로고    scopus 로고
    • A phylogenetic analysis of the genus Saccharomyces based on 18S rRNA gene sequences: Description of Saccharomyces kunashirensis sp. nov. and Saccharomyces martiniae sp. nov
    • James SA, Cai J, Roberts IN, Collins MD. 1997. A phylogenetic analysis of the genus Saccharomyces based on 18S rRNA gene sequences: description of Saccharomyces kunashirensis sp. nov. and Saccharomyces martiniae sp. nov. Int J Syst Bacteriol 47: 453-460.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 453-460
    • James, S.A.1    Cai, J.2    Roberts, I.N.3    Collins, M.D.4
  • 18
    • 0018242685 scopus 로고
    • Deoxyribonucleic acid relatedness between Bacillus anthracis, Bacillus cereus and Bacillus thuringiensis
    • Kaneko T, Nozaki R, Aizawa K. 1978. Deoxyribonucleic acid relatedness between Bacillus anthracis, Bacillus cereus and Bacillus thuringiensis. Microbiol Immunol 22: 639-641.
    • (1978) Microbiol. Immunol. , vol.22 , pp. 639-641
    • Kaneko, T.1    Nozaki, R.2    Aizawa, K.3
  • 19
    • 0029682171 scopus 로고    scopus 로고
    • Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods
    • Keswani J, Orkand S, Premachandran U, et al. 1996. Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods. Int J Syst Bacteriol 46: 727-735.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 727-735
    • Keswani, J.1    Orkand, S.2    Premachandran, U.3
  • 20
    • 84984932880 scopus 로고    scopus 로고
    • Array of hope
    • Lander ES. 1999. Array of hope. Nat Genet 21(suppl 1): 3-4.
    • (1999) Nat. Genet. , vol.21 , Issue.SUPPL. 1 , pp. 3-4
    • Lander, E.S.1
  • 22
    • 0031962882 scopus 로고    scopus 로고
    • DNA chips: An array of possibilities
    • Marshall A, Hodgson J. 1998. DNA chips: An array of possibilities. Nature Biotechnol 16: 27-31.
    • (1998) Nature Biotechnol. , vol.16 , pp. 27-31
    • Marshall, A.1    Hodgson, J.2
  • 23
    • 0026629643 scopus 로고
    • Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: Lack of congruence with results of DNA-DNA hybridizations
    • Martinez-Murcia AJ, Benlloch S, Collins MD. 1992. Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: Lack of congruence with results of DNA-DNA hybridizations. Int J Syst Bacteriol 42: 412-421.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 412-421
    • Martinez-Murcia, A.J.1    Benlloch, S.2    Collins, M.D.3
  • 24
    • 0034129918 scopus 로고    scopus 로고
    • Functional genomics of Escherichia coli in Japan
    • Mori H, Isono K, Horiuchi T, Miki T. 2000. Functional genomics of Escherichia coli in Japan. Res Microbiol 151: 121-128.
    • (2000) Res. Microbiol. , vol.151 , pp. 121-128
    • Mori, H.1    Isono, K.2    Horiuchi, T.3    Miki, T.4
  • 25
    • 0033814080 scopus 로고    scopus 로고
    • Three new species in the Saccharomyces sensu stricto complex: Saccharomyces cariocanus, Saccharomyces kudriavzevii and Saccharomyces mikatae
    • Naumov GI, James SA, Naumova ES, Louis EJ, Roberts IN. 2000. Three new species in the Saccharomyces sensu stricto complex: Saccharomyces cariocanus, Saccharomyces kudriavzevii and Saccharomyces mikatae. Int J Syst Evol Microbiol 50(5): 1931-1942.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , Issue.5 , pp. 1931-1942
    • Naumov, G.I.1    James, S.A.2    Naumova, E.S.3    Louis, E.J.4    Roberts, I.N.5
  • 27
    • 0032823523 scopus 로고    scopus 로고
    • Genome-wide analysis of DNA copy-number changes using cDNA microarrays
    • Pollack JR, Perou CM, Alizadeh AA, et al. 1999. Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nature Genet 23: 41-46.
    • (1999) Nature Genet. , vol.23 , pp. 41-46
    • Pollack, J.R.1    Perou, C.M.2    Alizadeh, A.A.3
  • 28
    • 0034687702 scopus 로고    scopus 로고
    • A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains
    • Salama N, Guillemin K, McDaniel TK, et al. 2000. A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains. Proc Natl Acad Sci USA 97: 14 668-14 673.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 14668-14673
    • Salama, N.1    Guillemin, K.2    McDaniel, T.K.3
  • 30
    • 0031800106 scopus 로고    scopus 로고
    • Microarrays: Biotechnology's discovery platform for functional genomics
    • Schena M, Heller RA, Theriault TP, et al. 1998. Microarrays: biotechnology's discovery platform for functional genomics. Trends Biotechnol 16: 301-306.
    • (1998) Trends Biotechnol. , vol.16 , pp. 301-306
    • Schena, M.1    Heller, R.A.2    Theriault, T.P.3
  • 31
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E, Goebel BM. 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44: 846-849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 32
    • 0031815634 scopus 로고    scopus 로고
    • Co-existence of two types of chromosome in the bottom fermenting yeast, Saccharomyces pastorianus
    • Tamai Y, Momma T, Yoshimoto H, Kaneko Y. 1998. Co-existence of two types of chromosome in the bottom fermenting yeast, Saccharomyces pastorianus. Yeast 14: 923-933.
    • (1998) Yeast , vol.14 , pp. 923-933
    • Tamai, Y.1    Momma, T.2    Yoshimoto, H.3    Kaneko, Y.4
  • 33
    • 0033735702 scopus 로고    scopus 로고
    • Diversity of the HO gene encoding an endonuclease for mating-type conversion in the bottom fermenting yeast Saccharomyces pastorianus
    • Tamai Y, Tanaka K, Umemoto N, Tomizuka K, Kaneko Y. 2000. Diversity of the HO gene encoding an endonuclease for mating-type conversion in the bottom fermenting yeast Saccharomyces pastorianus. Yeast 16: 1335-1343.
    • (2000) Yeast , vol.16 , pp. 1335-1343
    • Tamai, Y.1    Tanaka, K.2    Umemoto, N.3    Tomizuka, K.4    Kaneko, Y.5
  • 34
    • 0032956681 scopus 로고    scopus 로고
    • Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays
    • Troesch A, Nguyen H, Miyada CG, et al. 1999. Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays. J Clin Microbiol 37: 49-55.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 49-55
    • Troesch, A.1    Nguyen, H.2    Miyada, C.G.3
  • 35
    • 0000770675 scopus 로고
    • Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
    • Wayne LG, Brenner DJ, Colwell RR, et al. 1987. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37: 463-464.
    • (1987) Int. J. Syst. Bacteriol. , vol.37 , pp. 463-464
    • Wayne, L.G.1    Brenner, D.J.2    Colwell, R.R.3
  • 37
    • 0037148758 scopus 로고    scopus 로고
    • The genome sequence of Schizosaccharomyces pombe
    • Wood V, Gwilliam R, Rajandream MA, et al. 2002. The genome sequence of Schizosaccharomyces pombe. Nature 415: 871-880.
    • (2002) Nature , vol.415 , pp. 871-880
    • Wood, V.1    Gwilliam, R.2    Rajandream, M.A.3


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