Visualizing human brain surface from T1-weighted MR images using texture-mapped triangle meshes

NeuroImage

Volumn 26, Issue 1, 2005, Pages 1-12

  Seppä, Mika ^a   Hämäläinen, Matti ^a,b  

^a AALTO UNIVERSITY   (Finland)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Brain surface visualization; Texture mapping; Triangle mesh rendering; Volume rendering

Indexed keywords

ANISOTROPY; ARTICLE; BRAIN CORTEX; BRAIN MAPPING; BRAIN SIZE; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGE QUALITY; IMAGING SYSTEM; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; THREE DIMENSIONAL IMAGING;

EID: 18044382901     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2005.01.030     Document Type: Article

References (50)

1. K. Akeley, P. Haeberli, and D. Burns The tomesh.c program C Program on SGI Developer's Toolbox CD 1990
2. M. Alexa Recent advances in mesh morphing Comput. Graph. Forum 21 2002 173 196
3. P. Alliez, D. Cohen-Steiner, O. Devillers, B. Lévy, and M. Desbrun Anisotropic polygonal remeshing ACM Trans. Graph 22 2003 485 493
4. J.F. Blinn, and M.E. Newell Texture and reflection in computer generated images Commun. ACM 19 1976 542 547
5. M. Bomans, K.-H. Höhne, U. Tiede, and M. Riemer 3-D segmentation of MR images of the head for 3-D display IEEE Trans. Med. Imag. 9 1990 177 183
6. B. Cabral, N. Cam, and J. Foran Accelerated volume rendering and tomographic reconstruction using texture mapping hardware A. Kaufman W. Krüger Proc. Vol. Vis. '94 1994 ACM Press New York, USA 91 98
7. M. Eck, T. DeRose, T. Duchamp, H. Hoppe, M. Lounsbery, and W. Stuetzle Multiresolution analysis of arbitrary meshes Proc. SIGGRAPH '95 1995 ACM Press New York, USA 173 182
8. T.T. Elvins A survey of algorithms for volume visualization Comput. Graph. 26 1992 194 201
9. F. Evans, S. Skiena, and A. Varshney Optimizing triangle strips for fast rendering R. Yagel G.M. Nielson Proc. Vis. '96 1996 IEEE Computer Society and ACM San Francisco, CA, USA 319 326
10. B. Fischl, A. Liu, and A.M. Dale Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex IEEE Trans. Med. Imag. 20 2001 70 80
11. B. Fischl, M.I. Sereno, and A.M. Dale Cortical surface-based analysis: II. Inflation, flattening, and a surface-based coordinate system NeuroImage 9 1999 195 207
12. M.S. Floater Parametrization and smooth approximation of surface triangulations Comput. Aided Geom. Des. 14 1997 231 250
13. M. Fuchs, M. Wagner, H.-A. Wishmann, K. Ottenberg, and O. Dössel Possibilities of functional brain imaging using a combination of MEG and MRT Oscillatory event related brain dynamics 1993 Plenum Press New York 435 457
14. T. Funkhouser, P. Min, M. Kazhdan, J. Chen, A. Halderman, and D. Dobkin A search engine for 3D models ACM Trans. Graph. 22 2003 83 105
15. R.C. Gonzalez, and R.E. Woods Digital image processing 1992 Addison Wesley Reading, MA
16. C. Gotsman, X. Gu, and A. Sheffer Fundamentals of spherical parameterization for 3D meshes ACM Trans. Graph. 22 2003 358 363
17. X. Gu, and S.-T. Yau Global conformal surface parametrization Proc. Euro-graphics/ACM SIGGRAPH Symp. Geom. Proc. 2003 Eurographics Association Aire-la-Ville, Switzerland 127 137
18. X. Gu, S.J. Gortler, and H. Hoppe Geometry images Proc. SIGGRAPH '02 2002 ACM Press New York, USA 355 361
19. I. Guskov, W. Sweldens, and P. Schröder Multiresolution signal processing for meshes Proc. SIGGRAPH '99 1999 ACM Press New York, USA 325 334
20. S. Haker, S. Angenent, A. Tannenbaum, R. Kikinis, G. Sapiro, and M. Halle Conformal surface parametrization for texture mapping IEEE Trans. Vis. Comput. Graph. 6 2000 181 189
21. P.S. Heckbert Survey of texture mapping IEEE Comput. Graph. Appl. 6 1986 56 67
22. K. Hormann, and G. Greiner MIPS: an efficient global parametrization method P.-J. Laurent P. Sablonniére L.L. Schumaker Curve and surface design: saint-malo 1999 2000 Vanderbilt Univ. Press Nashville, USA 153 162
23. K. Hormann, G. Greiner, and S. Campagna Hierarchical parametrization of triangulated surfaces B. Girod H. Niemann H.-P. Seidel Proc. Vision, Model., Vis. '99 1999 Infix Erlangen, Germany 219 226
24. M.K. Hurdal, P.L. Bowers, K. Stephenson, D.L. Sumners, K. Rehm, K. Schaper, and D.A. Rottenberg Quasi-conformally at mapping the human cerebellum Proc. 2nd Int. Conf. on Med. Image Comput. and Computer-Assisted Interv 1999 Springer-Verlag London, UK 279 286
25. A. Khodakovsky, N. Litke, and P. Schröder Globally smooth parameterizations with low distortion ACM Trans. Graph. 22 2003 350 357
26. K. Kreeger, and A. Kaufman Hybrid volume and polygon rendering with cube hardware Proc. ACM SIGGRAPH/EUROGRAPHICS Workshop Graph. Hardware 1999 ACM Press New York, USA 15 24
27. P. Lacroute, and M. Levoy Fast volume rendering using a shear-warp factorization of the viewing transformation Comput. Graph. 28 1994 451 458
28. A.W.F. Lee, W. Sweldens, P. Schröder, L. Cowsar, and D. Dobkin Maps: multiresolution adaptive parameterization of surfaces Proc. SIGGRAPH '98 1998 ACM Press New York, USA 95 104
29. T.M. Lehmann, C. Gönner, and K. Spitzer Survey: interpolation methods in medical image processing IEEE Trans. Med. Imag. 18 1999 1049 1075
30. T.M. Lehmann, C. Gönner, and K. Spitzer Addendum: B-spline interpolation in medical image processing IEEE Trans. Med. Imag. 20 2001 660 665
31. M. Levoy Display of surfaces from volume data IEEE Comput. Graph. Appl. 8 1988 29 37
32. M. Levoy A hybrid ray tracer for rendering polygon and volume data IEEE Comput. Graph. Appl. 10 1990 33 40
33. B. Lévy, S. Petitjean, N. Ray, and J. Maillot Least squares conformal maps for automatic texture atlas generation Proc. SIGGRAPH '02 2002 ACM Press New York, USA 362 371
34. W.E. Lorensen, and H.E. Cline Marching cubes: a high resolution 3D surface construction algorithm Comput. Graph. 21 1987 163 169
35. K.-L. Ma, G. Schussman, B. Wilson, K. Ko, J. Qiang, and R. Ryne Advanced visualization technology for terascale particle accelerator simulations Proc. ACM/IEEE Supercomputing '02 2002 IEEE Computer Society Press Los Alamitos, USA 1 11
36. J. Maillot, H. Yahia, and A. Verroust Interactive texture mapping Proc. SIGGRAPH '93 1993 ACM Press New York, USA 27 34
37. D.W. Marquardt An algorithm for least-squares estimation of nonlinear parameters J. Soc. Ind. Appl. Math. 11 1963 431 441
38. M. Meissner, J. Huang, D. Bartz, K. Mueller, and R. Crawfis A practical evaluation of popular volume rendering algorithms Proc. IEEE Symp. Vol. Vis. '00 2000 ACM Press New York, USA 81 90
39. E. Praun, and H. Hoppe Spherical parametrization and remeshing ACM Trans. Graph. 22 2003 340 349
40. C. Rezk-Salama, K. Engel, M. Bauer, G. Greiner, and T. Ertl Interactive volume rendering on standard PC graphics hardware using multi-textures and multi-stage rasterization S.N. Spencer Proc. ACM SIGGRAPH/EUROGRAPHICS Workshop Graph. Hardware 2000 ACM Press New York, USA 109 118
41. P.V. Sander, J. Snyder, S.J. Gortler, and H. Hoppe Texture mapping progressive meshes Proc. SIGGRAPH '01 2001 ACM Press New York, USA 409 416
42. P. Schröder, and W. Sweldens Spherical wavelets: efficiently representing functions on the sphere Proc. SIGGRAPH '95 1995 ACM Press New York, USA 161 172
43. O. Sorkine, D. Cohen-Or, R. Goldenthal, and D. Lischinski Bounded-distortion piece-wise mesh parametrization Proc. Vis. '02 2002 IEEE Computer Society Washington, USA 255 362
44. J.S. Suri, S. Singh, and L. Reden Computer vision and pattern recognition techniques for 2-D and 3-D MR cerebral cortical segmentation (part I): a state-of-the-art review Pattern Anal. Appl. 5 2002 46 76
45. J.S. Suri, S. Singh, and L. Reden Fusion of region and boundary/surface-based computer vision and pattern recognition techniques for 2-D and 3-D MR cerebral cortical segmentation (part-II): a state-of-the-art review Pattern Anal. Appl. 5 2002 77 98
46. G. Turk Texture synthesis on surfaces Proc. SIGGRAPH '01 2001 ACM Press New York, USA 347 354
47. M. Wagner, M. Fuchs, H.-A. Wischmann, K. Otternberg, and O. Dössel Cortex segmentation from 3D MR images for MEG reconstructions Biomagnetism: fundamental research and clinical applications 1995 IOS Press Amsterdam 433 438
48. L. Westover Footprint evaluation for volume rendering Comput. Graph. 24 1990 367 376
49. B. Wilson, K.-L. Ma, and P.S. McCormick A hardware-assisted hybrid rendering technique for interactive volume visualization Proc. IEEE Symp. Vol. Vis. Graph. '02 2002 IEEE Press Piscataway, USA 123 130
50. M. Woo, J. Neider, and T. Davis OpenGL programming guide 1997 Addison Wesley Developers Press, Reading Massachusetts 338 344 Chapt. 9