Micelle formation and crystallization as paradigms for virus assembly

BioEssays

Volumn 27, Issue 4, 2005, Pages 447-458

  McPherson, Alexander ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; NUCLEIC ACID;

ARTICLE; COMPLEX FORMATION; CRYSTAL; CRYSTALLIZATION; MICELLIZATION; NONHUMAN; PHYSICAL CHEMISTRY; POLYMERIZATION; PROTEIN ASSEMBLY; SURFACE PROPERTY; VIRUS ASSEMBLY;

AMINO ACID SEQUENCE; CAPSID; CRYSTALLIZATION; MICELLES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PROTEIN SUBUNITS; SEQUENCE ALIGNMENT; VIRAL PROTEINS; VIRUS ASSEMBLY;

MIRIDAE;

EID: 17844372452     PISSN: 02659247     EISSN: None     Source Type: Journal    
DOI: 10.1002/bies.20196     Document Type: Article

References (73)

1. Casjens S. 1985. Virus Structure and Assembly. Boston: Jones and Bartlett, Inc. p. 76-147.
2. Caspar DLD, Klug A. 1962. Physical principles in the construction of regular viruses. Cold Spr Harb Symp Quant Biol 27:1.
3. Kaper JM. 1975. The Chemical Basis of Virus Structure, Dissociation and Reassembly. Amsterdam: North Holland Pub. Co.
4. Rossmann MG, Erickson JW. 1985. Structure and Assembly of Icosahedral Shells. In: Casjens S, editor. Virus Structure and Assembly. Boston: Jones and Bartlett Pub. Inc. p. 29-74.
5. Ganser BK, Li S, Klishko VY, Finch JT, Sundquist WI. 1999. Assembly and analysis of conical models for the HIV-1 core. Science 283: 80-82.
6. Jaspars EMJ. 1985. Interaction of alfalfa mosaic virus nucleic acid and protein. In: Davies JW, editor. Molecular Plant Virology. Boca Raton: CRC Press, Inc.
7. Rossmann MG. 1985. The Structure and In Vitro Assembly of Southern Bean Mosaic Virus in Relation to that of other small Spherical Plant Viruses. In: Davies JW, editor. Molecular Plant Virology. Volume 1: Boca Raton, FL: CRC Press Inc.
8. Zlotnick A. 1994. To build a virus capsid. An equilibrium model of the self assembly of polyhedral protein complexes. J Mol Biol 241:59-67.
9. Zlotnick A, Johnson JM, Wingfield PW, Stahl SJ, Endres D. 1999. A theoretical model successfully identifies features of hepatitis B virus capsid assembly. Biochemistry 38:14644-14652.
10. Zlotnick A, Aldrich R, Johnson JM, Ceres P, Young MJ. 2000. Mechanism of capsid assembly for an icosahedral plant virus. Virology 277:450-456.
11. Kegel WK, van der Schoot P. 2004. Competing hydrophobic and screened-coulomb interactions in hepatitis B virus capsid assembly. Biophys J Biophys J 86:3905-3913.
12. Thompson D. 1917. On Growth and Form. Cambridge, UK: Cambridge University Press. p. 368.
13. Tanford C. 1980. The Hydrophobic Effect. London: John Wiley.
14. Israelachvili J. 1992. Intermolecular and Surface Forces. San Diego, CA: Academic Press.
15. Moroi Y. 1992. Micelles: Theoretical and Applied Aspects. New York: Plenum Press.
16. Gelbart WM, Ben-Shaul A, Roux D. 1994. Micelles, Membranes, Microemulsions and Monolayers. New York: Springer-Verlag.
17. Jones MN, Chapman D. 1995. Micelles, Monolayers and Biomembranes. New York: Wiley-Liss.
18. Dalton AJ, Haguenau F, editors. 1968. The Membranes, Ultrastructure in Biological Systems. Volume 4. New York: Academic Press.
19. Luisi PL, Straub BE, etditors. 1982. Micelles; Biological and Technological Relevance of Amphiphilic Structures in Apolar Media. New York: Plenum Press.
20. Luisi PL. 1991. Concepts and pictographic models in reverse micells. In: Gratzel M, Kalaya-nsundarum K, editors. Kinetics and Catalysis in Microbetergeneous Systems. N.Y.: Marcel Dekker, Inc. p. 115-134.
21. Schurtenberger P, Scartazzini R, Magid LL, Leser ME, Luisi PL. 1990. Structural and dynamic properties of polymer-like reverse micells. J Phys Chem 94:3695-3701.
22. Monnard PA, Oberholzer T, Luisi P. 1997. Entrapment of nucleic acids in liposomes. Biochim Biophys Acta 1329:39-50.
23. Battistel E, Imre EV, Luisi PL. 1989. Solubilization and structural properties of nucleic acids in reverse micelles. In: Rosoff M, editor. Controlled Release of Drugs: Polymers and Aggregate Systems. N.Y.: VCH Publishers. p. 257-275.
24. Budker VG, Slattum PM, Monahan SD, Wolff JA. 2002. Entrapment and condensation of DNA in neutral reverse micelles. Biophys J 82:1570-1579.
25. Felgner PL. 1997. Nonviral strategies for gene therapy. Scientific American 102-106.
26. Safinya CR. 2001. Structures of lipid-DNA complexes: supramolecular assembly and gene delivery. Curr Opin Struct Biol 11:440-448.
27. Ball P. 1999. The Self Made Tapestry: Pattern Formation in Nature. Oxford: Oxford Univ. Press.
28. Johnson JE, Argos P. 1985. Virus particle stability and structure. In: Francki RIB, editor. The Plant Viruses. Polyhedral Virions with Tripartite Genomes, Volume 1. London: Plenum Press.
29. Johnson JE, Ruechert R. 1997. Assembly of Spherical Viruses. In: Chiu W, Burnett RM, Garcea RL, editors. Structural Biology of Viruses. Oxford: Oxford University Press.
30. Argos P, Johnson JE. 1984. Chemical Stability in Simple Spherical Plant Viruses, in Biological Macromolecutes and Assemblies. In: Jurnak FA, McPherson A, editors. Virus Structures. New York: John Wiley and Sons.
31. Larson SB, Lucas RW, McPherson A. 2004. Crystallographic structure of the T = 1 particle of brome mosaic virus. J Mol Biol 345:1-15.
32. Rao ALN, Grantham GL. 1995. Biological significance of the seven amino-terminal basic residues of brome mosaic virus coat protein. Virology 211:42-52.
33. Schmitz I, Rao ALN. 1998. Deletions in the conserved amino-terminal basic arm of cucumber mosaic virus coat protein disrupt virion assembly but do not abolish infectivity and cell-to-cell movement. Virology 248:323-331.
34. Bancroft JB, Hills GJ, Markham R. 1967. A study of the self-assembly process in a small spherical virus. Formation of organized structures from protein subunits in vitro. Virology 31:354-379.
35. Pfeiffer P, Herzog M, Hirth L. 1976. RNA viruses: stabilization of brome mosaic virus. Philos Trans R Soc Lond B Biol Sci 276:99-107.
36. Krol MA, Olson NH, Tate J, Johnson JE, Baker TS, et al. 1999. RNA-controlled polymorphism in the in vivo assembly of 180-subunit and 120-subunit virions from a single capsid protein. PNAS USA 96:13650-13655.
37. Pfeiffer P, Hirth L. 1974. Aggregation states of brome mosaic virus protein. Virology 61:160-167.
38. Ahlquist P, Allison R, Dejong W, Janda M, Kroner P, et al. 1990. Molecular biology of bromowrus replication and host specificity. In: Pirone TP, Shaw JG, editors. Viral Genes and Plant Pathogenesis. New York: Springer-Verlag. p. 144-155.
39. Hull R, Maule AJ. 1985. Virus multiplication. In: Francki RIB, editor. The Plant Viruses, Volume 1. New York: Plenum Press.
40. Martelli GP, Russo M. 1985. Virus-host relationships: symptomalogical and ultrastructural aspects. In: Francki RIB, editor. The Plant Viruses. Volume 1. New York: Plenum Press.
41. Fresco JR, Alberts BM, Doty P. 1960. Some molecular details of the secondary structure of ribonucleic acid. Nature 188:98-101.
42. Witz J, Strazielle C. 1973. Viral RNAs. In: Fasman GD, Timasheff SN, editors. Subunits in Biological Systems. Part. B. New York: Marcel Dekker.
43. Spirin AS. 1963. Some problems concerning the macromolecular structure of ribonucleic acids. Prog Nucleic Acid Res 1:301-345.
44. Tinoco I, Uhlenbeck OC, Levine MD. 1971. Estimation of secondary structure in ribonucleic acids. Nature 230:362-367.
45. Onoa B, Tinoco I Jr, 2004. RNA folding and unfolding. Curr Opin Struct Biol 14:374-379.
46. Buckley HE. 1951. Crystal Growth. London: John Wiley and Sons.
47. Burton WK, Cabrera N, Frank FC. 1951. The growth of crystals and the equilibrium structure of their surfaces. Philos Trans R Soc 243: 299.
48. Chernov AA. 1984. Modern Crystallography: Crystal Growth. Berlin: Springer-Verlag,
49. Chernov AA, Rashkovich LN, Smolískii IL, Kuznetsov YG, Mkrtchyan AA, et al. 1988. Growth of Crystals. In: Givargizov EI, Grinberg SA, editors. Modern crystallography, Volume 15. Berlin: Springer-Verlag.
50. Biscari P, Sluckin TJ. 2001. Expulsion of disinclinations in nematic liquid crystals. Eur J Appl Math 1-16.
51. Risidori S, Olivi-Tran N, Pampaloni E. 2000. Geometrical frustration in 2D optical patterns. Eur Phys J D12:15-20.
52. Virga EG. 1997. Disinclinations and bumps in nematic liquid crystals. Philos Trans R Soc Lond B Biol Sci 355:2035-2044.
53. Repnik R, Mathelitsch L, Svetec M, Kralj S. 2003. Physics of defects in nematic liquid crystals. Eur J of Physics 24:481-492.
54. Shaw JG. 1984. Early events in plant virus infection. In: Davies JW, editor. Molecular Plant Virology. Volume 2. Boca Raton, FL: CRC Press.
55. Jencks WP. 1975. Binding energy, specificity, and enzymatic catalysis: The circe effect. Adv Enzymol 43:219-240.
56. Segel IH. 1975. Enzyme Kinetics: Behavior and Analysis of Rapid Equilibrium and Steady State Enzyme Systems. New York: John Wiley and Sons Inc.
57. Stout GH, Jensen LH. 1989. X-ray Structure Determination. New York: John Wiley and Sons Inc.
58. Helliwell JR. 1992. Macromolecular Crystallography with Synchrotron Radiation. Cambridge: Cambridge Univ Press.
59. Cuillel M, Jacrot B, Zulauf M. 1981. A T+1 capsid formed by the protein of brome mosaic virus in the presence of trypsin. Virology 110:63-72.
60. Lucas RW, Kuznetsov YG, Larson SB, McPherson A. 2001. Crystallization of Brome mosaic virus and T = 1 Brome mosaic virus particles following a structural transition. Virology 286:290-303.
61. Al-Khayat H, Bhella D, Kenney J, Roth J, Kingsman A, et al. 1999. Yeast Ty retrotransposons assemble into virus-like particles whose T numbers depend on the C-terminal length of the capsid protein. J Mol Biol 292:65-73.
62. Kuznetsov YG, Malkin AJ, Lucas RW, Plomp M, McPherson A. Imaging of viruses by atomic force microscopy. J Gen Virol 2001. 82:2025-2034.
63. Ten-Wolde PR, Frenkel D. 1997. Enhancement of protein crystal nucleation by critical density fluctuations. Science 277:1975-1978.
64. Piazza R. 1999. Interactions in protein solutions near crystallization: a colloid physics approach. J Cryst Growth 196:415-423.
65. Fraenkel-Conrat H, Williams RC. 1955. Reconstitution of active tobacco mosaic virus from it's inactive protein and nucleic acid components. PNAS USA 41:690-698.
66. Bancroft JB, Hiebert E. 1967. Formation of an infectious nucleoprotein from protein and nucleic acid isolated fron a small spherical virus. Virology 32:354-356.
67. Bancroft JB. 1970. The self-assembly of spherical plant viruses. Adv Virus Res 16:99-134.
68. Malkin AJ, Plomp M, McPherson A. 2004. Unraveling the architecture of viruses by high-resolution atomic force microscopy. In: Lieberman PM, editor. Methods in Molecular Biology. Volume 292. Totowa, NJ: Humana Press Inc. p. 85-108.
69. McPherson A, Malkin AJ, Kuznetsov Yu G. 2000. Atomic force microscopy in the study of macromolecular crystal growth. Annu Rev Biophys Biomol Struct 29:361-410.
70. McPherson A, Malkin AJ, Kuznetsov YG, Plomp M. 2001. Atomic force microscopy applications in macromolecular crystallography. Acta Crystallogr D Biol Crystallogr 57:1053-1060.
71. Mazer NA, Benedek GB, Carey MC. 1980. QELS studies on aqueous biliary lipid systems. Mixed micelle formation in bile salt-chain solutions. Biochem 19:601-615.
72. Glauert AM, Lucy JA. 1968. Globular micelles and the organization of membrane lipids. In: Dalton AJ, Haguenau F, editors. The Membranes. New York: Academic Press.
73. El Seoud OA. 1984. Acidities and basicities in reversed micellar systems. In: Luisi PL, Straub BE, editors. Reverse Micelles: Biological and Technological Relevance of Amphiphilic Structures in Apolar Media. New York: Plenum Press.