메뉴 건너뛰기




Volumn 5, Issue , 2005, Pages

Orientation determination by wavelets matching for 3D reconstruction of very noisy electron microscopic virus images

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; CORRELATION ANALYSIS; CRYOELECTRON MICROSCOPY; DATA ANALYSIS; ELECTRON MICROSCOPY; HERPES SIMPLEX VIRUS 1; IMAGE ANALYSIS; REPRODUCIBILITY; STATISTICAL SIGNIFICANCE; THREE DIMENSIONAL IMAGING; VIRUS CAPSID; VIRUS EXAMINATION; VIRUS PARTICLE; VIRUS TYPING;

EID: 17844369722     PISSN: 14726807     EISSN: 14726807     Source Type: Journal    
DOI: 10.1186/1472-6807-5-5     Document Type: Article
Times cited : (2)

References (30)
  • 1
    • 0015242164 scopus 로고
    • Procedures for three-dimensional reconstruction of spherical viruses by Fourier synthesis from electron micrographs
    • Crowther RA: Procedures for three-dimensional reconstruction of spherical viruses by Fourier synthesis from electron micrographs. Phil Trans Roy Soc Lond B 1971, 261:221-230.
    • (1971) Phil Trans Roy Soc Lond B , vol.261 , pp. 221-230
    • Crowther, R.A.1
  • 2
    • 0031214838 scopus 로고    scopus 로고
    • Improved common-line based icosahedral virus particle image orientation estimation algorithms
    • Thuman-Commike PA, Chiu W: Improved common-line based icosahedral virus particle image orientation estimation algorithms. Ultramicroscopy 1997, 68:231-256.
    • (1997) Ultramicroscopy , vol.68 , pp. 231-256
    • Thuman-Commike, P.A.1    Chiu, W.2
  • 3
    • 0029665272 scopus 로고    scopus 로고
    • A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy
    • Baker TS, Cheng RH: A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy. J Struct Biol 1996, 116:120-130.
    • (1996) J Struct Biol , vol.116 , pp. 120-130
    • Baker, T.S.1    Cheng, R.H.2
  • 6
    • 1842409555 scopus 로고    scopus 로고
    • Determination of the fold of hepatitis B virus core protein by electron cryo-microscopy
    • Böttcher B, Wynne SA, Crowther RA: Determination of the fold of hepatitis B virus core protein by electron cryo-microscopy. Nature (London) 1997, 386:88-91.
    • (1997) Nature (London) , vol.386 , pp. 88-91
    • Böttcher, B.1    Wynne, S.A.2    Crowther, R.A.3
  • 7
    • 0028496320 scopus 로고
    • An Overview of wavelet based multiresolution analyses
    • Jawerth B, Sweldens W: An Overview of wavelet based multiresolution analyses. SIAM Rev 1994, 36:377-412.
    • (1994) SIAM Rev , vol.36 , pp. 377-412
    • Jawerth, B.1    Sweldens, W.2
  • 8
    • 0032306382 scopus 로고    scopus 로고
    • Multiresolution approach to automatic detection of spherical particles from electron cryomicroscopy images
    • Chicago, USA
    • Saad A, Chiu W, Thuman-Commike P: Multiresolution approach to automatic detection of spherical particles from electron cryomicroscopy images. Chicago, USA, IEEE SP Soc ICIP 1998.
    • (1998) IEEE SP Soc ICIP
    • Saad, A.1    Chiu, W.2    Thuman-Commike, P.3
  • 10
    • 0000313739 scopus 로고
    • Exact filters for general geometry threedimensional reconstruction
    • Harauz G, van Heel M: Exact filters for general geometry threedimensional reconstruction. Optik 1986, 73:146-156.
    • (1986) Optik , vol.73 , pp. 146-156
    • Harauz, G.1    Van Heel, M.2
  • 11
    • 0032712359 scopus 로고    scopus 로고
    • Adding the third dimension to virus life Cycles: Three dimensional Reconstruction of Icosahedral Virues from Cryo-Electron Micrographs
    • Baker TS, Olson NH, Fuller SD: Adding the third dimension to virus life Cycles : Three dimensional Reconstruction of Icosahedral Virues from Cryo-Electron Micrographs. Micro mo Biol 1999, 63:862-922.
    • (1999) Micro Mo Biol , vol.63 , pp. 862-922
    • Baker, T.S.1    Olson, N.H.2    Fuller, S.D.3
  • 12
    • 0034109473 scopus 로고    scopus 로고
    • Identification of additional coat/scaffolding interactions in a bacteriophage P22 mutant defective in maturation
    • Thuman-Commike PA, Greene B, Jakana J, McGough A, Prevelige PE, Chiu W: Identification of additional coat/scaffolding interactions in a bacteriophage P22 mutant defective in maturation. J Virol 2000, 74:3871-3873.
    • (2000) J Virol , vol.74 , pp. 3871-3873
    • Thuman-Commike, P.A.1    Greene, B.2    Jakana, J.3    McGough, A.4    Prevelige, P.E.5    Chiu, W.6
  • 14
    • 0035782663 scopus 로고    scopus 로고
    • Estimates of the Amplitude Decay of Electron Micrographs of Single Particles and its Effects on High Resolution Structure Determination
    • Saad A, Ludtke S, Jakana J, Rixon FJ, Tsuruta H, Chiu W: Estimates of the Amplitude Decay of Electron Micrographs of Single Particles and its Effects on High Resolution Structure Determination. J Struct Biol 2001, 133:32-42.
    • (2001) J Struct Biol , vol.133 , pp. 32-42
    • Saad, A.1    Ludtke, S.2    Jakana, J.3    Rixon, F.J.4    Tsuruta, H.5    Chiu, W.6
  • 15
    • 0032798429 scopus 로고    scopus 로고
    • Roles of Triplex and Scaffolding Proteins in HSV-1 Capsid Formation Suggested by the Structures of Recombinant Particles
    • Saad A, Hong Zhou Z, Jakana J, Chiu W, Rixon FJ: Roles of Triplex and Scaffolding Proteins in HSV-1 Capsid Formation Suggested by the Structures of Recombinant Particles. J Virol 1999, 73:6821-6830.
    • (1999) J Virol , vol.73 , pp. 6821-6830
    • Saad, A.1    Hong Zhou, Z.2    Jakana, J.3    Chiu, W.4    Rixon, F.J.5
  • 16
    • 3042533758 scopus 로고    scopus 로고
    • Wavelets filtering for classification of very noisy electron microscopic single particles images- Application on structure determination of VP5-VP19C recombinant
    • Saad A: Wavelets filtering for classification of very noisy electron microscopic single particles images- Application on structure determination of VP5-VP19C recombinant. BMC Struct Biol 2003, 3:9.
    • (2003) BMC Struct Biol , vol.3 , pp. 9
    • Saad, A.1
  • 17
    • 0025286635 scopus 로고
    • Classification of macromolecular assemblies studied as "single particles"
    • Frank J: Classification of macromolecular assemblies studied as "single particles". Quart Rev Biophys 1990, 23:281-329.
    • (1990) Quart Rev Biophys , vol.23 , pp. 281-329
    • Frank, J.1
  • 18
    • 0019728717 scopus 로고
    • Use of multivariate statistics in analyzing the images of biological macromolecules
    • Van Heel M, Frank J: Use of multivariate statistics in analyzing the images of biological macromolecules. Ultramicroscopy 1981, 6:187-194.
    • (1981) Ultramicroscopy , vol.6 , pp. 187-194
    • Van Heel, M.1    Frank, J.2
  • 19
    • 2942733550 scopus 로고    scopus 로고
    • Conformational Changes in Sindbis virions Resulting from Exposure to Low pH and Interactions with Cells Suggest that Cell Penetration May Occur at the Cell Surface in the Absence of Membrane Fusion
    • Paredes AM, Ferreira D, Horton M, Saad A, Tsuruta H, Johnston R, Klimstra W, Ryman K, Hernandez R, Chiu W, Brown DT: Conformational Changes in Sindbis virions Resulting from Exposure to Low pH and Interactions with Cells Suggest that Cell Penetration May Occur at the Cell Surface in the Absence of Membrane Fusion. Virol 2004, 324:373-387.
    • (2004) Virol , vol.324 , pp. 373-387
    • Paredes, A.M.1    Ferreira, D.2    Horton, M.3    Saad, A.4    Tsuruta, H.5    Johnston, R.6    Klimstra, W.7    Ryman, K.8    Hernandez, R.9    Chiu, W.10    Brown, D.T.11
  • 20
    • 0000133685 scopus 로고
    • Ten lectures on wavelets
    • Daubechies I: Ten lectures on wavelets. SIAM 1992.
    • (1992) SIAM
    • Daubechies, I.1
  • 22
    • 0004198869 scopus 로고
    • Cambridge UK, Cambridge University press
    • Meyer Y: Wavelets and operators. Cambridge UK, Cambridge University press; 1993.
    • (1993) Wavelets and Operators
    • Meyer, Y.1
  • 23
    • 0024904699 scopus 로고
    • Multi-frequency Channel Decompositions of images and wavelet Models
    • Mallat S: Multi-frequency Channel Decompositions of images and wavelet Models. IEEE on ASSP 1989, 37:2091-2110.
    • (1989) IEEE on ASSP , vol.37 , pp. 2091-2110
    • Mallat, S.1
  • 24
    • 84990610636 scopus 로고
    • Fast Wavelet transforms and numerical algorithms
    • Beylkin G, Coifman R, Rokhlin V: Fast Wavelet transforms and numerical algorithms. Comm Pure Appl Math 1991, 44:141-183.
    • (1991) Comm Pure Appl Math , vol.44 , pp. 141-183
    • Beylkin, G.1    Coifman, R.2    Rokhlin, V.3
  • 26
    • 0029273863 scopus 로고    scopus 로고
    • A new class of two-channel biorthogonal filter banks and wavelets bases
    • Phoong SM, Kim CW, vaidyanathan PP, Ansari R: A new class of two-channel biorthogonal filter banks and wavelets bases. IEEE Trans SP 1997, 43:649-665.
    • (1997) IEEE Trans SP , vol.43 , pp. 649-665
    • Phoong, S.M.1    Kim, C.W.2    Vaidyanathan, P.P.3    Ansari, R.4
  • 27
    • 17844399866 scopus 로고
    • Discrete Biorthogonal Wavelet transform as block circulant matrices
    • Turcajova J, Kautsky R: Discrete Biorthogonal Wavelet transform as block circulant matrices. Lin Algeb Appl 1995, 223:393-413.
    • (1995) Lin Algeb Appl , vol.223 , pp. 393-413
    • Turcajova, J.1    Kautsky, R.2
  • 28
    • 0029307534 scopus 로고
    • De-noising by soft thresholding
    • Donoho D: De-noising by soft thresholding. IEEE Trans Inf Th 1995, 41:613-627.
    • (1995) IEEE Trans Inf Th , vol.41 , pp. 613-627
    • Donoho, D.1
  • 29
    • 85017298793 scopus 로고    scopus 로고
    • Adaptive Ranked-Order Vectorial Speckle Filtering in Polarimetric SAR Images, Comparison with a Class of Filters
    • Saad A, EL-Assad S: Adaptive Ranked-Order Vectorial Speckle Filtering in Polarimetric SAR Images, Comparison with a Class of Filters. Signal processing 1997, 14:286-300.
    • (1997) Signal Processing , vol.14 , pp. 286-300
    • Saad, A.1    El-Assad, S.2
  • 30
    • 0021583718 scopus 로고
    • FCM: The Fuzzy C-Means clustering algorithm
    • Bezdek R, Ehrlich FW: FCM: the Fuzzy C-Means clustering algorithm. Comp Geosci 1984, 10:191-203.
    • (1984) Comp Geosci , vol.10 , pp. 191-203
    • Bezdek, R.1    Ehrlich, F.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.