The Fed-1 (CAUU)4 element is a 5′ UTR dark-responsive mRNA instability element that functions independently of dark-induced polyribosome dissociation

Plant Molecular Biology

Volumn 56, Issue 5, 2004, Pages 761-773

  Bhat, Sumana ^a   Tang, Li ^b   Krueger, Angela D ^a   Smith, Christopher L ^e   Ford, Sharon R ^a   Dickey, Lynn F ^c,d   Petracek, Marie E ^a  

^a OKLAHOMA STATE UNIVERSITY   (United States)

^b SHANGHAI UNIVERSITY   (China)

^c Biolex   (United States)

^d Biolex Therapeutics   (United States)

^e NONE

Author keywords

Light regulation; mRNA half life; Photosynthesis; Post transcriptional

Indexed keywords

PLANTS (BOTANY); TOBACCO;

LIGHT REGULATED MRNA; POLYRIBOSOME DISSOLUTION; RIBONUCLEASE A; TRANSGENIC TOBACCO;

RNA;

FERREDOXIN; MESSENGER RNA; MICROSATELLITE DNA;

5' UNTRANSLATED REGION; ARTICLE; DARKNESS; DNA RESPONSIVE ELEMENT; GENETICS; HALF LIFE TIME; LIGHT; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PEA; POLYSOME; RADIATION EXPOSURE; RNA STABILITY; TOBACCO; TRANSGENIC PLANT;

5' UNTRANSLATED REGIONS; BASE SEQUENCE; DARKNESS; FERREDOXINS; HALF-LIFE; LIGHT; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PEAS; PLANTS, GENETICALLY MODIFIED; POLYRIBOSOMES; RESPONSE ELEMENTS; RNA STABILITY; RNA, MESSENGER; TOBACCO;

MUTATION; NUCLEIC ACIDS; PLANTS; TOBACCO;

NICOTIANA TABACUM; PISUM SATIVUM;

EID: 17844368911     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-004-5109-8     Document Type: Article

References (42)

1. M. Anderson K. Folta K. Warpeha J. Gibbons J. Gao L. Kaufman 1999 Blue light-directed destabilization of the pea Lhcb1*4 transcript depends on sequences within the 5′ Untranslated Region Plant Cell 11 1579 1590
2. S. Baginsky W. Gruissem 2002 Endonucleolytic activation directs dark-induced chloroplast mRNA degradation Nucleic Acids Res. 30 4527 4533
3. M.T. Chan S.M. Yu 1998 The 3′ untranslated region of a rice alpha-amylase gene mediates sugar-dependent abundance of mRNA Plant J. 15 685 695
4. C.Y. Chen R. Gherzi S.E. Ong E.L. Chan R. Raijmakers G.J. Pruijn G. Stoecklin C. Moroni M. Mann M. Karin 2001 AU binding proteins recruit the exosome to degrade ARE-containing mRNAs Cell 107 451 464
5. C.T. De Maria G. Brewer 1996 AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation J. Biol. Chem. 271 12179 12184
6. L. Dickey M. Petracek T. Nguyen E. Hansen W. Thompson 1998 Light regulation of Fed-1 mRNA requires an element in the 5′ untranslated region and correlates with differential polyribosome association Plant Cell 10 475 484
7. L.F. Dickey M. Gallo-Meagher W.F. Thompson 1992 Light regulatory sequences are located within the 5′ portion of the Fed-1 message sequence EMBO J. 11 2311 2317
8. L.F. Dickey T.T. Nguyen G.C. Allen W.F. Thompson 1994 Light modulation of ferredoxin mRNA abundance requires an open reading frame Plant Cell 6 1171 1176
9. D. Drapier J. Girard-Bascou D.B. Stern F.A. Wollman 2002 A dominant nuclear mutation in Chlamydomonas identifies a factor controlling chloroplast mRNA stability by acting on the coding region of the atpA transcript Plant J. 31 687 697
10. C. Eibl Z. Zou A. Beck M. Kim J. Mullet H.-U. Koop 1999 In vivo analysis of plastid psbA, rbcL and rpl32 UTR elements by chloroplast transformation: tobacco plastid gene expression is controlled by modulation of transcript levels and translation efficiency Plant J. 19 333 345
11. R.C. Elliott L.F. Dickey M.J. White W.F. Thompson 1989 cis-Acting elements for light regulation of pea ferredoxin I gene expression are located within transcribed sequences Plant Cell 1 691 698
12. K.M. Folta L.S. Kaufman 2003 Phototropin 1 is required for high-fluence blue-light-mediated mRNA destabilization Plant. Mol. Biol. 51 609 618
13. C. Gatz 1995 Novel inducible/repressible gene expression systems Methods Cell Biol. 50 411 424
14. P. Gil P. Green 1996 Multiple regions of the Arabidopsis SAUR-AC1 gene control transcript abundance: the 3′ untranslated region functions as an mRNA instability determinant EMBO J. 15 1678 1686
15. R.A. Gutiérrez G.C. MacIntosh P.J. Green 1999 Current perspectives on mRNA stability in plants: multiple levels and mechanisms of control Trends Plant. Sci. 4 429 438
16. E.R. Hansen M.E. Petracek L.F. Dickey W.F. Thompson 2001 The 5′ end of the pea Ferredoxin-1 mRNA mediates rapid and reversible light-directed changes in translation in tobacco Plant Physiol. 125 770 778
17. C.A. Helliwell C.I. Webster J.C. Gray 1997 Light-regulated expression of the pea plastocyanin gene is mediated by elements within the transcribed region of the gene Plant J. 12 499 506
18. T. Henics E. Nagy H.J. Oh P. Csermely A. von Gabain J.R. Subjeck 1999 Mammalian Hsp70 and Hsp110 proteins bind to RNA motifs involved in mRNA stability J. Biol. Chem. 274 17318 17324
19. D. Higgs J. Colbert 1994 Oat phytochrome A mRNA degradation appears to occur via two distinct pathways Plant Cell 6 1007 1019
20. D.C. Higgs R.S. Shapiro K.L. Kindle D.B. Stern 1999 Small cis-acting sequences that specify secondary structures in a chloroplast mRNA are essential for RNA stability and translation Mol. Cell. Biol. 19 8479 8491
21. R.A. Jefferson 1987 Assaying chimeric genes in plants: the GUS gene fusion system Plant Mol. Biol. Report. 5 387 405
22. R.A. Jefferson T.A. Kavanagh M.W. Bevan 1987 GUS fusions: ß glucuronidase as a sensitive and versatile gene fusion marker in higher plants EMBO J. 6 3901 3907
23. M.G. Koziel N.B. Carozzi N. Desai 1996 Optimizing expression of transgenes with an emphasis on post-transcriptional events Plant Mol. Biol. 32 393 405
24. I. Lemm J. Ross 2002 Regulation of c-myc mRNA decay by translational pausing in a coding region instability determinant Mol. Cell. Biol. 22 3959 3969
25. J. Ling D.R. Wells R.L. Tanguay L.F. Dickey W.F. Thompson D.R. Gallie 2000 Heat shock protein HSP101 binds to the Fed-1 internal light regulatory element and mediates its high translational activity Plant Cell 12 1213 1228
26. H.B. Lowman D.E. Draper 1986 On the recognition of helicl RNA by cobra venom V1 nuclease J. Biol. Chem. 261 5396 5403
27. L.E. Maquat 2004 Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics Nat. Rev. Mol. Cell. Biol. 5 89 99
28. M. Ohme-Takagi C.B. Taylor T.C. Newman P.J. Green 1993 The Effect of Sequences with High AU Content on Messenger RNA Stability in Tobacco Proc. Natl. Acad. Sci. USA 90 11811 11815
29. M.A. Perez-Amador P. Lidder M.A. Johnson J. Landgraf E. Wisman P.J. Green 2001 New molecular phenotypes in the dst mutants of Arabidopsis revealed by DNA microarray analysis Plant Cell 13 2703 2717
30. M. Petracek L. Dickey T. Nguyen C. Gatz D. Sowinski G. Allen W. Thompson 1998 Ferredoxin-1 mRNA is destabilized by changes in photosynthetic electron transport Proc. Natl. Acad. Sci. USA 95 9009 9013
31. M.E. Petracek L.F. Dickey S.C. Huber W.F. Thompson 1997 Light-regulated changes in abundance and polyribosome association of ferredoxin mRNA are dependent on photosynthesis Plant Cell 9 2291 2300
32. M.E. Petracek T.-T. Nguyen W.F. Thompson L.F. Dickey 2000 Premature termination codons destabilize ferredoxin-1 mRNA when ferredoxin-1 is translated Plant J. 21 563 569
33. M.E. Petracek W.F. Thompson 2000 Post-transcriptional light regulation of nuclear-encoded genes JK Setlow Genetic Engineering Plenum Press New York 1 10
34. B. Sarkar Q. Xi C. He R.J. Schneider 2003 Selective degradation of AU-rich mRNAs promoted by the p37 AUF1 protein isoform Mol. Cell. Biol. 23 6685 6693
35. G.A. Soukup R.R. Breaker 1999 Relationship between internucleotide linkage geometry and the stability of RNA RNA 5 1308 1325
36. J.A. Sullivan J.C. Gray 2002 Multiple plastid signals regulate the expression of the pea plastocyanin gene in pea and transgenic tobacco plants Plant J. 32 763 774
37. L. Tang S. Bhat M.E. Petracek 2003 Light control of nuclear gene mRNA abundance and translation in Tobacco Plant Physiol. 133 1979 1990
38. A. van Hoof P.J. Green 1996 Premature nonsense codons decrease the stability of phytohemagglutinin mRNA in a position-dependent manner Plant J. 10 415 424
39. A. van Hoof P.J. Green 1997 Rare codons are not sufficient to destabilize a reporter gene transcript in tobacco Plant Mol. Biol. 35 383 387
40. P. Weinmann M. Gossen H. Bujard W. Hillen C. Gatz 1994 A chimaeric transactivator allows tetracycline-responsive gene expression in whole plants Plant J. 5 559 569
41. Zou, Z., Eibl, C. and Koop, H.U. 2003. The stem-loop region of the tobacco psbA5′UTR is an important determinant of mRNA stability and translation efficiency. Mol. Genet. Genomics.
42. Zuker, M., Mathews, D.H. and Turner, D.H. 1999. Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In: J. Barciszewski, B.F.C. Clark (Eds.), NATO ASI Series. Kluwer Academic Publishers.