-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0036213293
-
Phylogenetic analysis of invertebrate lysozymes and the evolution of lysozyme function
-
Bachali, S., Jager, M., Hassanin, A., Schoentgen, F., Jolles, P., Fiala-Medioni, A., and Deutsch, J.S. 2002. Phylogenetic analysis of invertebrate lysozymes and the evolution of lysozyme function. J. Mol. Evol. 54: 652-664.
-
(2002)
J. Mol. Evol.
, vol.54
, pp. 652-664
-
-
Bachali, S.1
Jager, M.2
Hassanin, A.3
Schoentgen, F.4
Jolles, P.5
Fiala-Medioni, A.6
Deutsch, J.S.7
-
3
-
-
0019170487
-
Structure of the lipid-containing bacteriophage phi 6: Disruption by Triton X-100 treatment
-
Bamford, D.H. and Palva, E.T. 1980. Structure of the lipid-containing bacteriophage phi 6: Disruption by Triton X-100 treatment. Biochim. Biophys. Acta 601: 245-259.
-
(1980)
Biochim. Biophys. Acta
, vol.601
, pp. 245-259
-
-
Bamford, D.H.1
Palva, E.T.2
-
4
-
-
0036435882
-
Analysis of catalytic residues in enzyme active sites
-
Bartlett, G.J., Porter, C.T., Borkakoti, N., and Thornton, J.M. 2002. Analysis of catalytic residues in enzyme active sites. J. Mol. Biol. 324: 105-121.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 105-121
-
-
Bartlett, G.J.1
Porter, C.T.2
Borkakoti, N.3
Thornton, J.M.4
-
5
-
-
0035550460
-
Separation of monomerizing and lysozyme activities of destabilase from medicinal leech salivary gland secretion
-
Baskova, I.P., Zavalova, L.L., Basanova, A.V., and Sass, A.V. 2001. Separation of monomerizing and lysozyme activities of destabilase from medicinal leech salivary gland secretion. Biochemistry 66: 1368-1373.
-
(2001)
Biochemistry
, vol.66
, pp. 1368-1373
-
-
Baskova, I.P.1
Zavalova, L.L.2
Basanova, A.V.3
Sass, A.V.4
-
6
-
-
9144257886
-
The Pfam protein families database
-
Bateman, A., Coin, L., Durbin, R., Finn, R.D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S., Sonnhammer, E.L., et al. 2004. The Pfam protein families database. Nucleic Acids Res. 32: D138-D141.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.10
-
7
-
-
0036616218
-
The Protein Data Bank
-
Berman, H.M., Battistuz, T., Bhat, T.N., Bluhm, W.F., Bourne, P.E., Burkhardt, K., Feng, Z., Gilliland, G.L., Iype, L., Jain, S., et al. 2002. The Protein Data Bank. Acta Crystallogr. D Biol. Crystallogr. 58: 899-907.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
Feng, Z.7
Gilliland, G.L.8
Iype, L.9
Jain, S.10
-
8
-
-
0026700408
-
The lytic enzyme of the Pseudomonas phage phi 6: Purification and biochemical characterization
-
Caldentey, J. and Bamford, D.H. 1992. The lytic enzyme of the Pseudomonas phage phi 6: Purification and biochemical characterization. Biochim. Biophys. Acta 1159: 44-50.
-
(1992)
Biochim. Biophys. Acta
, vol.1159
, pp. 44-50
-
-
Caldentey, J.1
Bamford, D.H.2
-
9
-
-
3342951741
-
Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease
-
Cheng, H., Shen, N., Pei, J., and Grishin, N.V. 2004. Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease. Protein Sci. 13: 2260-2269.
-
(2004)
Protein Sci.
, vol.13
, pp. 2260-2269
-
-
Cheng, H.1
Shen, N.2
Pei, J.3
Grishin, N.V.4
-
10
-
-
0030729838
-
An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
-
Esnouf, R.M. 1997. An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J. Mol. Graph. Model. 15: 133-138.
-
(1997)
J. Mol. Graph. Model.
, vol.15
, pp. 133-138
-
-
Esnouf, R.M.1
-
11
-
-
0038386050
-
3D-Jury: A simple approach to improve protein structure predictions
-
Ginalski, K., Elofsson, A., Fischer, D., and Rychlewski, L. 2003. 3D-Jury: A simple approach to improve protein structure predictions. Bioinformatics 19: 1015-1018.
-
(2003)
Bioinformatics
, vol.19
, pp. 1015-1018
-
-
Ginalski, K.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
12
-
-
4043146514
-
BTLCP proteins: A novel family of bacterial transglutaminase-like cysteine proteinases
-
Ginalski, K., Kinch, L., Rychlewski, L., and Grishin, N.V. 2004a. BTLCP proteins: A novel family of bacterial transglutaminase-like cysteine proteinases. Trends Biochem. Sci. 29: 392-395.
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 392-395
-
-
Ginalski, K.1
Kinch, L.2
Rychlewski, L.3
Grishin, N.V.4
-
13
-
-
4644371778
-
Raptor protein contains a caspase-like domain
-
_. 2004b. Raptor protein contains a caspase-like domain. Trends Biochem. Sci. 29: 522-524.
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 522-524
-
-
-
14
-
-
0035995920
-
Characterization of phi12, a bacteriophage related to phi6: Nucleotide sequence of the large double-stranded RNA
-
Gottlieb, P., Potgieter, C., Wei, H., and Toporovsky, I. 2002a. Characterization of phi12, a bacteriophage related to phi6: Nucleotide sequence of the large double-stranded RNA. Virology 295: 266-271.
-
(2002)
Virology
, vol.295
, pp. 266-271
-
-
Gottlieb, P.1
Potgieter, C.2
Wei, H.3
Toporovsky, I.4
-
15
-
-
0036349164
-
Characterization of phi 12, a bacteriophage related to phi 6: Nucleotide sequence of the small and middle double-stranded RNA
-
Gottlieb, P., Wei, H., Potgieter, C., and Toporovsky, I. 2002b. Characterization of phi 12, a bacteriophage related to phi 6: Nucleotide sequence of the small and middle double-stranded RNA. Virology 293: 118-124.
-
(2002)
Virology
, vol.293
, pp. 118-124
-
-
Gottlieb, P.1
Wei, H.2
Potgieter, C.3
Toporovsky, I.4
-
16
-
-
0036856210
-
Euclidian space and grouping of biological objects
-
Grishin, V.N. and Grishin, N.V. 2002. Euclidian space and grouping of biological objects. Bioinformatics 18: 1523-1534.
-
(2002)
Bioinformatics
, vol.18
, pp. 1523-1534
-
-
Grishin, V.N.1
Grishin, N.V.2
-
17
-
-
0016726181
-
Novel type of murein transglycosylase in Escherichia coli
-
Holtje, J.V., Mirelman, D., Sharon, N., and Schwarz, U. 1975. Novel type of murein transglycosylase in Escherichia coli. J. Bacteriol. 124: 1067-1076.
-
(1975)
J. Bacteriol.
, vol.124
, pp. 1067-1076
-
-
Holtje, J.V.1
Mirelman, D.2
Sharon, N.3
Schwarz, U.4
-
18
-
-
0034690810
-
Characterization of phi8, a bacteriophage containing three double-stranded RNA genomic segments and distantly related to Phi6
-
Hoogstraten, D., Qiao, X., Sun, Y., Hu, A., Onodera, S., and Mindich, L. 2000. Characterization of phi8, a bacteriophage containing three double-stranded RNA genomic segments and distantly related to Phi6. Virology 272: 218-224.
-
(2000)
Virology
, vol.272
, pp. 218-224
-
-
Hoogstraten, D.1
Qiao, X.2
Sun, Y.3
Hu, A.4
Onodera, S.5
Mindich, L.6
-
19
-
-
0035167322
-
Common origin of four diverse families of large eukaryotic DNA viruses
-
Iyer, L.M., Aravind, L., and Koonin, E.V. 2001. Common origin of four diverse families of large eukaryotic DNA viruses. J. Virol. 75: 11720-11734.
-
(2001)
J. Virol.
, vol.75
, pp. 11720-11734
-
-
Iyer, L.M.1
Aravind, L.2
Koonin, E.V.3
-
20
-
-
0344393521
-
Lytic transglycosylases in macromolecular transport systems of Gram-negative bacteria
-
Koraimann, G. 2003. Lytic transglycosylases in macromolecular transport systems of Gram-negative bacteria. Cell. Mol. Life Sci. 60: 2371-2388.
-
(2003)
Cell. Mol. Life Sci.
, vol.60
, pp. 2371-2388
-
-
Koraimann, G.1
-
21
-
-
0345864022
-
SMART 4.0: Towards genomic data integration
-
Letunic, I., Copley, R.R., Schmidt, S., Ciccarelli, F.D., Doerks, T., Schultz, J., Ponting, C.P., and Bork, P. 2004. SMART 4.0: Towards genomic data integration. Nucleic Acids Res. 32: D142-D144.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Letunic, I.1
Copley, R.R.2
Schmidt, S.3
Ciccarelli, F.D.4
Doerks, T.5
Schultz, J.6
Ponting, C.P.7
Bork, P.8
-
22
-
-
0036087630
-
CDD: A database of conserved domain alignments with links to domain three-dimensional structure
-
Marchler-Bauer, A., Panchenko, A.R., Shoemaker, B.A., Thiessen, P.A., Geer, L.Y., and Bryant, S.H. 2002. CDD: A database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res. 30: 281-283.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 281-283
-
-
Marchler-Bauer, A.1
Panchenko, A.R.2
Shoemaker, B.A.3
Thiessen, P.A.4
Geer, L.Y.5
Bryant, S.H.6
-
23
-
-
0018386121
-
Cell wall lysin as a component of the bacteriophage phi 6 virion
-
Mindich, L. and Lehman, J. 1979. Cell wall lysin as a component of the bacteriophage phi 6 virion. J. Virol. 30: 489-496.
-
(1979)
J. Virol.
, vol.30
, pp. 489-496
-
-
Mindich, L.1
Lehman, J.2
-
24
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A.G., Brenner, S.E., Hubbard, T., and Chothia, C. 1995. SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247: 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
25
-
-
0029999636
-
A family of lysozyme-like virulence factors in bacterial pathogens of plants and animals
-
Mushegian, A.R., Fullner, K.J., Koonin, E.V., and Nester, E.W. 1996. A family of lysozyme-like virulence factors in bacterial pathogens of plants and animals. Proc. Natl. Acad. Sci. 93: 7321-7326.
-
(1996)
Proc. Natl. Acad. Sci.
, vol.93
, pp. 7321-7326
-
-
Mushegian, A.R.1
Fullner, K.J.2
Koonin, E.V.3
Nester, E.W.4
-
26
-
-
0035339494
-
Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases
-
Pei, J. and Grishin, N.V. 2001. Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases. Trends Biochem. Sci. 26: 275-277.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 275-277
-
-
Pei, J.1
Grishin, N.V.2
-
27
-
-
0036180681
-
Breaking the singleton of germination protease
-
_. 2002. Breaking the singleton of germination protease. Protein Sci. 11: 691-697.
-
(2002)
Protein Sci.
, vol.11
, pp. 691-697
-
-
-
28
-
-
0242515820
-
Peptidase family U34 belongs to the superfamily of N-terminal nucleophile hydrolases
-
_. 2003. Peptidase family U34 belongs to the superfamily of N-terminal nucleophile hydrolases. Protein Sci. 12: 1131-1135.
-
(2003)
Protein Sci.
, vol.12
, pp. 1131-1135
-
-
-
29
-
-
0037433034
-
PCMA: Fast and accurate multiple sequence alignment based on profile consistency
-
Pei, J., Sadreyev, R., and Grishin, N.V. 2003. PCMA: Fast and accurate multiple sequence alignment based on profile consistency. Bioinformatics 19: 427-428.
-
(2003)
Bioinformatics
, vol.19
, pp. 427-428
-
-
Pei, J.1
Sadreyev, R.2
Grishin, N.V.3
-
30
-
-
0034665230
-
Characterization of phi 13, a bacteriophage related to phi 6 and containing three dsRNA genomic segments
-
Qiao, X., Qiao, J., Onodera, S., and Mindich, L. 2000. Characterization of phi 13, a bacteriophage related to phi 6 and containing three dsRNA genomic segments. Virology 275: 218-224.
-
(2000)
Virology
, vol.275
, pp. 218-224
-
-
Qiao, X.1
Qiao, J.2
Onodera, S.3
Mindich, L.4
-
32
-
-
0015910976
-
Characterization of segmented double-helical RNA from bacteriophage phi6
-
Semancik, J.S., Vidaver, A.K., and Van Etten, J.L. 1973. Characterization of segmented double-helical RNA from bacteriophage phi6. J. Mol. Biol. 78: 617-625.
-
(1973)
J. Mol. Biol.
, vol.78
, pp. 617-625
-
-
Semancik, J.S.1
Vidaver, A.K.2
Van Etten, J.L.3
-
34
-
-
0029692068
-
Lysozyme: A model enzyme in protein crystallography
-
Strynadka, N.C. and James, M.N. 1996. Lysozyme: A model enzyme in protein crystallography. Exs 75: 185-222.
-
(1996)
Exs
, vol.75
, pp. 185-222
-
-
Strynadka, N.C.1
James, M.N.2
-
35
-
-
0141637403
-
A small chimerically bifunctional monomeric protein: Tapes japonica lysozyme
-
Takeshita, K., Hashimoto, Y., Ueda, T., and Imoto, T. 2003. A small chimerically bifunctional monomeric protein: Tapes japonica lysozyme. Cell. Mol. Life Sci. 60: 1944-1951.
-
(2003)
Cell. Mol. Life Sci.
, vol.60
, pp. 1944-1951
-
-
Takeshita, K.1
Hashimoto, Y.2
Ueda, T.3
Imoto, T.4
-
36
-
-
0028091202
-
Doughnut-shaped structure of a bacterial muramidase revealed by X-ray crystallography
-
Thunnissen, A.M., Dijkstra, A.J., Kalk, K.H., Rozeboom, H.J., Engel, H., Keck, W., and Dijkstra, B.W. 1994. Doughnut-shaped structure of a bacterial muramidase revealed by X-ray crystallography. Nature 367: 750-753.
-
(1994)
Nature
, vol.367
, pp. 750-753
-
-
Thunnissen, A.M.1
Dijkstra, A.J.2
Kalk, K.H.3
Rozeboom, H.J.4
Engel, H.5
Keck, W.6
Dijkstra, B.W.7
-
37
-
-
0029052863
-
The catalytic domain of a bacterial lytic transglycosylase defines a novel class of lysozymes
-
Thunnissen, A.M., Isaacs, N.W., and Dijkstra, B.W. 1995. The catalytic domain of a bacterial lytic transglycosylase defines a novel class of lysozymes. Proteins 22: 245-258.
-
(1995)
Proteins
, vol.22
, pp. 245-258
-
-
Thunnissen, A.M.1
Isaacs, N.W.2
Dijkstra, B.W.3
-
38
-
-
0035815113
-
Evolution of function in protein superfamilies, from a structural perspective
-
Todd, A.E., Orengo, C.A., and Thornton, J.M. 2001. Evolution of function in protein superfamilies, from a structural perspective. J. Mol. Biol. 307: 1113-1143.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
39
-
-
0036683309
-
Plasticity of enzyme active sites
-
_. 2002. Plasticity of enzyme active sites. Trends Biochem. Sci. 27: 419-426.
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 419-426
-
-
-
41
-
-
0029857709
-
Genes from the medicinal leech (Hirudo medicinalis) coding for unusual enzymes that specifically cleave endo-epsilon (γ-Glu)-Lys isopeptide bonds and help to dissolve blood clots
-
Zavalova, L., Lukyanov, S., Baskova, I., Snezhkov, E., Akopov, S., Berezhnoy, S., Bogdanova, E., Barsova, E., and Sverdlov, E.D. 1996. Genes from the medicinal leech (Hirudo medicinalis) coding for unusual enzymes that specifically cleave endo-epsilon (γ-Glu)-Lys isopeptide bonds and help to dissolve blood clots. Mol. Gen. Genet. 253: 20-25.
-
(1996)
Mol. Gen. Genet.
, vol.253
, pp. 20-25
-
-
Zavalova, L.1
Lukyanov, S.2
Baskova, I.3
Snezhkov, E.4
Akopov, S.5
Berezhnoy, S.6
Bogdanova, E.7
Barsova, E.8
Sverdlov, E.D.9
-
42
-
-
0034673696
-
Destabilase from the medicinal leech is a representative of a novel family of lysozymes
-
Zavalova, L.L., Baskova, I.P., Lukyanov, S.A., Sass, A.V., Snezhkov, E.V., Akopov, S.B., Artamonova, II, Archipova, V.S., Nesmeyanov, V.A., Kozlov, D.G., et al. 2000. Destabilase from the medicinal leech is a representative of a novel family of lysozymes. Biochim. Biophys. Acta 1478: 69-77.
-
(2000)
Biochim. Biophys. Acta
, vol.1478
, pp. 69-77
-
-
Zavalova, L.L.1
Baskova, I.P.2
Lukyanov, S.A.3
Sass, A.V.4
Snezhkov, E.V.5
Akopov, S.B.6
Artamonova, I.I.7
Archipova, V.S.8
Nesmeyanov, V.A.9
Kozlov, D.G.10
|