Detection of West Nile virus and Japanese encephalitis virus using real-time PCR with a probe common to both viruses

Journal of Virological Methods

Volumn 126, Issue 1-2, 2005, Pages 119-125

  Shirato, Kazuya ^a   Miyoshi, Hirotsugu ^a   Kariwa, Hiroaki ^a   Takashima, Ikuo ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

Author keywords

Japanese encephalitis virus; TaqMan assay; West Nile virus

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; DIAGNOSTIC TEST; ENDEMIC DISEASE; EXPERIMENTAL INFECTION; GENE SEGREGATION; JAPANESE ENCEPHALITIS VIRUS; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; VIRUS DETECTION; VIRUS IDENTIFICATION; VIRUS STRAIN; WEST NILE FLAVIVIRUS;

ANIMALIA; JAPANESE ENCEPHALITIS VIRUS; WEST NILE VIRUS;

EID: 17644412848     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2005.02.001     Document Type: Article

References (21)

1. J.F. Anderson, C.R. Vossbrink, T.G. Andreadis, A. Iton, W.H. Beckwith III, and D.R. Mayo A phylogenetic approach to following West Nile virus in Connecticut Proc. Natl. Acad. Sci. U.S.A. 98 2001 12885 12889
2. A.E. Garmendia, H.J. Van Kruiningen, and R.A. French The West Nile virus: its recent emergence in North America Microbes Infect. 3 2001 223 229
3. H.M. Hamman, D.H. Clarke, and W.H. Price Antigenic variation of West Nile virus in relation to geography Am. J. Epidemiol. 82 1965 40 55
4. Z. Hubálek, and J. Halouzka West Nile fever - a reemerging mosquito-borne viral disease in Europe Emerg. Infect. Dis. 5 1999 643 650
5. A. Igarashi Epidemiology and control of Japanese encephalitis World Health Stat. Q. 45 1992 299 305
6. A. Igarashi, M. Tanaka, K. Morita, T. Takasu, A. Ahmed, A. Ahmed, D.S. Akram, and M.A. Wagar Detection of West Nile and Japanese encephalitis viral genome sequences in cerebrospinal fluid from acute encephalitis cases in Karachi, Pakistan Microbiol. Immunol. 38 1994 827 830
7. R.S. Lanciotti, A.J. Kerst, R.S. Nansi, M.S. Godsey, C.J. Mitchell, H.M. Savage, N. Komar, N.A. Panella, B.C. Allen, K.E. Volpe, B.S. Davis, and J.T. Roehrig Rapid detection of West Nile virus from human clinical specimens, field-collected mosquitoes, and avian samples by a TaqMan reverse transcriptase-PCR assay J. Clin. Microbiol. 38 2000 4066 4071
8. D.A. Martin, D.A. Muth, T. Brown, A.J. Johnson, N. Karabatsos, and J. Roehrig Standardization of immunoglobulin M capture enzyme-linked immunosorbent assays for routine diagnosis of arboviral infections J. Clin. Microbiol. 38 2000 1823 1826
9. P.T. Nga, M.D.C. Parquet, V.D. Cuong, S.P. Ma, F. Hasebe, S. Inoue, Y. Makino, M. Takagi, V.S. Nam, and K. Morita Shift in Japanese encephalitis virus (JEV) genotype circulating in northern Vietnam: implications for frequent introductions of JEV from Southeast Asia to East Asia J. Gen. Virol. 85 2004 1625 1631
10. J.F. Papin, W. Vahrson, and D.P. Dittmer SYBR-Green based real-time quantitative PCR assay for detection of West Nile virus circumvents false-negative results due to strain variability J. Clin. Microbiol. 42 2004 1511 1518
11. M. Parida, G. Posadsas, S. Inoue, F. Hasebe, and K. Morita Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus J. Clin. Microbiol. 42 2004 257 263
12. K.R. Porter, P.L. Summers, D. Dubois, B. Puri, W. Nelson, E. Henchal, J.J. Oprandy, and C.G. Hayes Detection of West Nile virus by the polymerase chain reaction and analysis of nucleotide sequence variation Am. J. Trop. Med. Hyg. 48 1993 440 446
13. A.T. Pyke, D.T. Williams, D.J. Nisbet, A.F. Van Den Hurk, C.T. Taylor, C.A. Johansen, J. Macdonald, R.A. Hall, R.J. Simmons, R.J.V. Mason, J.M. Lee, S.A. Ritchie, G.A. Smith, and J.S. Mackenzie The appearance of a second genotype of Japanese encephalitis virus in the Australasian region Am. J. Trop. Med. Hyg. 65 2001 747 753
14. A.T. Pyke, I.N. Smith, A.F. Van Den Hurk, J.A. Northill, T.F. Chuan, A.J. Westacott, and G.A. Smith Detection of Australasian flavivirus encephalitic viruses using rapid fluorogenic TaqMan RT-PCR assays J. Virol. Methods 117 2004 161 167
15. L. Rosen The natural history of Japanese encephalitis virus Annu. Rev. Microbiol. 40 1986 395 414
16. J.H. Sherret, M. Poidinger, J.S. Mackenzie, A.K. Broom, V. Deubel, W.I. Lipkin, T. Briese, E.A. Gould, and R.A. Hall The relationship between West Nile and Kunjin viruses Emerg. Infect. Dis. 7 2001 697 705
17. K. Shirato, T. Mizutani, H. Kariwa, and I. Takashima Discrimination of West Nile virus and Japanese encephalitis virus strains using RT-PCR RFLP analysis Microbiol. Immunol. 47 2003 439 445
18. K. Shirato, H. Miyoshi, A. Goto, Y. Ako, T. Ueki, H. Kariwa, and I. Takashima Viral envelope protein glycosylation is a molecular determinant of the neuroinvasiveness of the New Yorkstrain of the West Nile virus J. Gen. Virol. 85 2004 3637 3645
19. I. Takashima, K. Morita, M. Chida, D. Hayasaka, T. Sato, C. Takezawa, A. Igarashi, H. Kariwa, K. Yoshimitsu, J. Arikawa, and N. Hashimoto A case of tick-borne encephalitis in Japan and isolation of the virus J. Clin. Microbiol. 35 1997 1943 1947
20. T. Takegami, H. Ishak, C. Miyamoto, Y. Shirai, and K. Kamimura Isolation and molecular comparison of Japanese encephalitis virus in Ishikawa, Japan Jpn. J. Infect. Dis. 53 2000 178 179
21. P.D. Uchil, and V. Satchidanandam Phylogenetic analysis of Japanese encephalitis virus: envelope gene based analysis reveals a fifth genotype, geographic clustering, and multiple introductions of the virus into the Indian subcontinent Am. J. Trop. Med. Hyg. 65 2001 242 251