Development and evaluation of a multiplex PCR for differentiation of foot-and-mouth disease virus strains native to India

Journal of Virological Methods

Volumn 126, Issue 1-2, 2005, Pages 1-11

  Giridharan, Palani ^a   Hemadri, Divakar ^a   Tosh, Chakradhar ^a   Sanyal, Aniket ^a   Bandyopadhyay, Santanu K ^a  

^a Indian Veterinary Research Institute Campus   (India)

Author keywords

ELISA; Foot and mouth disease; Polymerase chain reaction; Serotyping

Indexed keywords

ARTICLE; CELL CULTURE; CONTROLLED STUDY; ENZYME LINKED IMMUNOSORBENT ASSAY; FOOT AND MOUTH DISEASE VIRUS; INDIA; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEROTYPE; VIRUS STRAIN;

FOOT-AND-MOUTH DISEASE VIRUS;

EID: 17644394887     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2005.01.015     Document Type: Article

References (45)

1. S. Alexandersen, Z. Zhang, A.I. Donaldson, and A.J.M. Garland The pathogenesis and diagnosis of foot-and-mouth disease J. Comp. Pathol. 129 2003 1 36
2. C.M.F. Amaral-Doel, N.E. Owen, N.P. Ferris, R.P. Kitching, and T.R. Doel Detection of foot-and-mouth disease viral sequences in clinical specimens and ethyleneimine-inactivated preparations by the polymerase chain reaction Vaccine 11 1993 415 421
3. Anonymous, 1999-2003. Anonymous, 1999. Annual reports of the Project Directorate on FMD. Mukteswar-Kumaon, Nainital, Uttaranchal, India.
4. D.M. Ansell, A.R. Samuel, W.C. Carpenter, and N.J. Knowles Genetic relationships between foot-and-mouth disease type Asia 1 viruses Epidemiol. Infect. 112 1994 213 224
5. R.M. Armstrong, A.R. Samuel, W.C. Carpenter, R. Kant, and N.J. Knowles A comparative study of serological and biochemical methods for strain differentiation of foot-and-mouth disease type A viruses Vet. Microbiol. 39 1994 285 298
6. S. Bhattacharya, B. Pattnaik, and R. Venkataramanan Development and application of a sandwich enzyme-linked immunosorbent assay (ELISA) for type identification of foot-and-mouth disease (FMD) virus in direct field materials Indian J. Anim. Sci. 66 1996 1201 1209
7. J.D. Callahan, F. Brown, F.A. Osorio, J.H. Sur, E. Kramer, G.W. Long, J. Lubroth, S.J. Ellis, K.S. Shoulars, K.L. Gaffney, D.L. Rock, and W.M. Nelson Use of a portable real-time reverse transcriptase polymerase chain reaction assay for rapid detection of foot-and-mouth disease virus J. Am. Vet. Med. Assoc. 220 2002 1636 1642
8. M. Callens, and K. De Clercq Differentiation of the seven serotypes of foot-and-mouth disease virus by reverse transcriptase polymerase chain reaction J. Virol. Meth. 67 1997 35 44
9. M. Callens, and K. De Clercq Highly sensitive detection of swine vesicular disease virus based on a single tube RT-PCR system and DIG-ELISA detection J. Virol. Meth. 77 1999 87 99
10. J.S. Chamberlain, R.A. Gibbs, J.E. Ranier, P.N. Nguyen, and C.T. Caskey Deletion screening of the Duchenne muscular dystrophy locus via Multiplex DNA amplification Nucl. Acids Res. 16 1988 11141 11156
11. A. Cheung, J. De LaMarter, S. Weiss, and H. Kupper Comparison of the major antigenic determinants of different serotypes of foot-and-mouth disease virus J. Virol. 48 1983 451 459
12. A. Clavijo, P.J. Viera-Pereira, and I. Bergmann Use of reverse transcription polymerase chain reaction (RT-PCR) for the rapid diagnosis of foot-and-mouth disease in South America Vet. Res. Comm. 27 2003 63 71
13. Fernández, J., Agüero, M., Romero, L.J., Vazquez, B.S., Belak, S., Arias, M., Sánchez-Vizcaíno, J.M., 2003. Rapid and differential diagnosis of foot-and-mouth disease virus (FMDV), swine vesicular disease virus (SVDV) and vesicular stomatitis virus (VSV) by one-step multiplex RT-PCR assay in clinical samples. Report of the Session of the Standing Technical Committee of the European Commission for the Control of Foot-and-Mouth disease held at Berne, Switzerland, September 16-19, 2003. FAO, Rome, pp. 116-119.
14. N.P. Ferris, J.M. Oxtoby, and J.F. Hughes Multiple-infected diagnostic specimens from foot-and-mouth disease endemic regions Rev. Sci. Tech. Off. Int. Epiz. 14 1995 557 565
15. M.A. Forsyth, and T. Barrett Evaluation of polymerase chain reaction for the detection and characterization of rinderpest and peste des petits ruminants viruses for epidemiological studies Virus Res. 39 1995 151 163
16. Forsyth, M.A., Belsham, G.J., Felipe, E., Mackay, D.K.J., 1998. Detection of foot-and-mouth disease virus on nasal swabs and oesophago-pharyngeal fluids using a reverse transcriptase polymerase chain reaction. Report of the Session of the Standing Technical Committee of the European Commission for the Control of Foot-and-Mouth disease held at Aldershot, UK, September 14-18, 1998. FAO, Rome, pp. 88-92.
17. C.B. Gurumurthy, A. Sanyal, R. Venkataramanan, C. Tosh, M. George, and D. Hemadri Genetic diversity in the VP1 gene of foot-and-mouth disease virus serotype Asia 1 Arch. Virol. 147 2002 85 102
18. R.S. Hedger, J.B. Condy, and S.M. Golding Infection of some species of African wild life with foot-and-mouth disease virus J. Comp. Pathol. 82 1972 455 461
19. D. Hemadri, A. Sanyal, C. Tosh, R. Venkataramanan, and B. Pattnaik Serotype C foot-and-mouth disease virus isolates from India belong to a separate so far not described lineage Vet. Microbiol. 92 2003 25 35
20. D. Hemadri, C. Tosh, R. Venkataramanan, A. Sanyal, A.R. Samuel, N.J. Knowles, and R.P. Kitching Genetic analysis of foot-and-mouth disease virus type O isolates responsible for field outbreaks in India between 1993 and 1999 Epidemiol. Infect. 125 2000 729 736
21. O. Henegariu, N.A. Heerema, S.R. Dlouhy, G.H. Vance, and P.H. Vogt Multiplex PCR: critical parameters and step-by-step protocol Bio Techniques 23 1997 504 511
22. C. House, and R.F. Meyer The detection of foot-and-mouth disease virus in oesophagealpharyngeal samples by a polymerase chain reaction technique J. Virol. Meth. 43 1993 1 6
23. Knowles, N.J., Samuel, A.R., 1995. Polymerase chain reaction amplification and cycle sequencing of the 1D (VP1) gene of foot-and-mouth disease viruses. Report of the Session of the Standing Technical Committee of the European Commission for the Control of Foot-and-Mouth disease held at Vienna, Austria, September 19-22, 1994. FAO, Rome, pp. 45-53.
24. N.J. Knowles, and A.R. Samuel Molecular epidemiology of foot-and-mouth disease Virus Res. 91 2003 65 80
25. N.J. Knowles, A.R. Samuel, P.R. Davies, R.P. Kitching, and A.I. Donaldson Outbreak of foot-and-mouth disease virus serotype O in the UK caused by a pandemic strain Vet. Rec. 148 2001 258 259
26. F. Locher, V.V.S. Suryanarayana, and J.-D. Tratschin Rapid detection and characterization of foot-and-mouth disease virus by restriction enzyme and nucleotide sequence analysis of PCR products J. Clin. Microbiol. 33 1995 440 444
27. N.F. Lomakina, F. Fallacara, M. Pacciarini, M. Amadori, A.I. Lomakin, A.M. Timina, L.O. Shcherbakova, and V.V. Drygin Application of universal primers for identification of foot-and-mouth disease virus and swine vesicular disease virus by PCR and PCR-ELISA Arch. Virol. 149 2004 1155 1170
28. O. Marquardt, O.C. Straub, R. Ahl, and B. Haas Detection of foot-and-mouth disease virus in nasal swabs of asymptomatic cattle by RT-PCR within 24 h J. Virol. Meth. 53 1995 255 261
29. M.A. Martinez, J. Dopazo, J. Hernandez, M.G. Mateu, F. Sobrino, E. Domingo, and N.J. Knowles Evolution of capsid protein genes of foot-and-mouth disease virus: antigenic variation without accumulation of amino acid substitutions over six decades J. Virol. 66 1992 3557 3565
30. R.F. Meyer, C.C. Brown, C. House, J.A. House, and T.W. Molitor Rapid and sensitive detection of foot-and-mouth disease virus in tissues by enzymatic RNA amplification of the polymerase gene J. Virol. Meth. 34 1991 161 172
31. J.I. Nunez, E. Blanco, T. Hernandez, C. Gomez-Tejedor, M.J. Martin, J. Dopazo, and F. Sobrino A RT-PCR assay for the differential diagnosis of vesicular viral diseases of swine J. Virol. Meth. 72 1998 227 235
32. J.I. Nunez, M.J. Martin, M.E. Piccone, E. Carrillo, E.L. Palma, J. Dopazo, and F. Sobrino Identification of optimal regions for phylogenetic studies on VP1 gene of foot-and-mouth disease virus: analysis of types A and O Argentinean viruses Vet. Res. 32 2001 31 45
33. B. Pattnaik, R. Venkataramanan, C. Tosh, A. Sanyal, D. Hemadri, A.R. Samuel, N.J. Knowles, and R.P. Kitching Genetic heterogeneity of Indian field isolates of foot-and-mouth disease virus serotype O as revealed by partial sequencing of 1D gene Virus Res. 55 1998 115 127
34. V.R. Racaniello Picornaviridae: The viruses and their replication Fields Virology 3rd ed. 2001 Lippincott Williams and Wilkins pp. 658-722
35. S.M. Reid, M.A. Forsyth, G.H. Hutchings, and N.P. Ferris Comparison of reverse transcription polymerase chain reaction, enzyme linked immunosorbent assay and virus isolation for the routine diagnosis of foot-and-mouth disease J. Virol. Meth. 70 1998 213 217
36. S.M. Reid, G.H. Hutchings, N.P. Ferris, and K. De Clercq Diagnosis of foot-and-mouth disease by RT-PCR: evaluation of primers for serotypic characterisation of viral RNA in clinical samples J. Virol. Meth. 83 1999 113 123
37. K.J.H. Robson, T.J.R. Harris, and F. Brown An assessment by competition hybridisation of the sequence homology between the RNAs of the seven serotypes of FMDV J. Gen. Virol. 37 1977 271 276
38. A. Rodriguez, E. Martinez-Salas, J. Dopazo, M. Davila, J.C. Saiz, and F. Sobrino Primer design for specific diagnosis by PCR of highly variable RNA viruses: typing of foot-and-mouth disease virus Virology 189 1992 363 367
39. A. Rodriguez, J.I. Nunez, G. Nolasco, F. Ponz, F. Sobrino, and C. de Blas Direct PCR detection of foot-and-mouth disease virus J. Virol. Meth. 47 1994 345 349
40. M. Saiz, D.B. De La Morena, E. Blanco, J.I. Nunez, R. Fernandez, and J.M. Sanchez-Vizcaino Detection of foot-and-mouth disease virus from culture and clinical samples by reverse transcription-PCR coupled to restriction enzyme and sequence analysis Vet. Res. 34 2003 105 117
41. A.R. Samuel, and N.J. Knowles Foot-and-mouth disease type O viruses exhibit genetically and geographically distinct evolutionary lineages (topotypes) J. Gen. Virol. 82 2001 609 621
42. V. Suryanarayana, B. Madanamohan, P. Bisht, C. Natarajan, and J.D. Tratschin Serotyping of foot-and-mouth disease virus by antigen capture reverse transcriptase/polymerase chain reaction J. Virol. Meth. 80 1999 45 52
43. C. Tosh, A. Sanyal, D. Hemadri, and R. Venkataramanan Phylogenetic analysis of serotype A foot-and-mouth disease virus isolated in India between 1977 and 2000 Arch. Virol. 147 2002 493 513
44. E.L. Woodbury, A.R. Samuel, N.J. Knowles, S.M. Hafez, and R.P. Kitching Analysis of mixed foot-and-mouth disease virus infections in Saudi Arabia: prolonged circulation of an exotic serotype Epidemiol. Infect. 112 1994 201 211
45. W. Vangrysperre, and K. De Clercq Rapid and sensitive polymerase chain reaction based detection and typing of foot-and-mouth disease virus in clinical samples and cell culture isolates, combined with a simultaneous differentiation with other genomically and/or symptomatically related viruses Arch. Virol. 141 1996 331 344