A RT-PCR assay for the differential diagnosis of vesicular viral diseases of swine

Journal of Virological Methods

Volumn 72, Issue 2, 1998, Pages 227-235

  Núñez, José Ignacio ^a   Blanco, Esther ^b   Hernández, Teresa ^b,c   Gómez Tejedor, Concepción ^b   Martín, María Jesus ^a   Dopazo, Joaquín ^a   Sobrino, Francisco ^b,c  

^a Tecn Para Diagnostico e Invest SA   (Spain)

^b INIA   (Spain)

^c CENTRO DE BIOLOGÍA MOLECULAR SEVERO OCHOA   (Spain)

Author keywords

Diagnosis; RT PCR; Vesicular diseases; Virus

Indexed keywords

ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; COMPUTER PROGRAM; CONTROLLED STUDY; DIFFERENTIAL DIAGNOSIS; FOOT AND MOUTH DISEASE VIRUS; GENE AMPLIFICATION; NONHUMAN; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; SEROTYPE; SWINE; SWINE VESICULAR EXANTHEMA VIRUS; TECHNIQUE; VESICULAR STOMATITIS VIRUS; VIRUS INFECTION;

ANIMALS; APHTHOVIRUS; DIAGNOSIS, DIFFERENTIAL; DNA PRIMERS; ELECTROPHORESIS, AGAR GEL; FOOT-AND-MOUTH DISEASE; GENE AMPLIFICATION; GENES, VIRAL; GENOTYPE; POLYMERASE CHAIN REACTION; RHABDOVIRIDAE INFECTIONS; RNA, VIRAL; SEQUENCE ALIGNMENT; STOMATITIS; SWINE; SWINE DISEASES; SWINE VESICULAR DISEASE; VESICULAR STOMATITIS-INDIANA VIRUS;

EID: 0344269347     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-0934(98)00032-9     Document Type: Article

References (37)

1. Amaral-Doel C.M.F., Owen N.E., Ferris N.P., Kitching R.P., Doel T.R. Detection of foot-and-mouth disease viral sequences in clinical specimens and ethyleneimine-inactivated preparations by the polymerase chain reaction. Vaccine. 11:1993;415-421.
2. Baer, G.M., Bellini, W.J., Fishbein, D.B., 1990. Rhabdoviruses. In: Fields, B.N., Knipe, D.M. (Eds.), Fields Virology. Raven Press, New York, pp. 867-882.
3. Brocchi E., Zhang G., Knowles N.J., Wilsden G., McCauley J.W., Marquardt O., Ohlinger V.F., De Simone F. Molecular epidemiology of recent outbreaks of swine vesicular disease: two genetically and distinct variants in Europe, 1987-1994. Epidemiol. Infect. 118:1997;51-61.
4. Brown F., Talbot P., Burrows R. Antigenic differences between isolates of swine vesicular disease virus and their relationship to coxsackie B5 virus. Nature. 254:1973;315-316.
5. Cartwright B., Brown F. Serological relationships between different strains of vesicular stomatitis virus. J. Gen. Virol. 16:1972;391-398.
6. Denoya C.D., Scodeller E.A., Vasquez C., La Torre J.L. Foot-and-mouth disease virus. II. Endoribonuclease activity within purified virions. Virology. 89:1978;67-74.
7. Domingo, E., Mateu, M.G., Martínez, M.A., Dopazo, J., Moya, A., Sobrino, F., 1990. Genetic variability and antigenic diversity of foot-and-mouth disease virus. In: Kurstak, E., Marusyk, R.G., Murphy, S.A., Van-Regenmortel, M.H.V. (Eds.), Applied Virology Research, vol. 2. Virus variation and epidemiology. Plenum, New York, pp. 233-266.
8. Dopazo J., Sobrino F. A computer program for the design of PCR primers for diagnosis of highly variable genomes. J. Virol. Methods. 41:1993;157-166.
9. Erlich H.A., Gelfand D., Sninsky J.J. Recent advances in the polymerase chain reaction. Science. 252:1991;1643-1651.
10. Feldhaus A.L., Lesnaw J.A. Nucleotide sequence of the L gene of vesicular stomatitis virus (New Jersey): identification of conserved domains in the New Jersey and Indiana L proteins. Virology. 163:1988;359-368.
11. Forsyth, M., Mackay, D., Sobrino, F., Ferris, N., 1994. A direct PCR method for foot-and-mouth disease virus detection using random hexanucleotides and gene-specific primers. In: Proceedings of the Research Group of the Standing Technical Committee of the European Commission for the Control of Foot-and-Mouth Disease Virus, Vienna, Austria.
12. Frazier, C.L., Shope, R.E., 1979. Serological relationships among animal rhabdoviruses. In: Bishop, D.H.L. (Ed.), Rhabdoviruses, vol. 1. CRC Press, Boca Raton, FL, pp. 43-63.
13. Graves J.H. Serological relationships of swine vesicular disease virus and coxsackie B5 virus. Nature. 245:1973;314-315.
14. Hedger, R.S., Mann, J.A., 1989. Virus infections of porcines. In: Pansaert, M.B. (Ed.), Virus Infections of Vertebrates. Elsevier Science, Amsterdam, pp. 241-250.
15. Höfner M.C., Carpenter W.C., Donaldson A.I. Detection of foot-and-mouth disease virus RNA in clinical samples and cell culture isolates by amplification of the capsid coding region. J. Virol. Methods. 42:1993;53-61.
16. Höfner M.C., Carpenter W.C., Ferris N.P., Kitching R.P., Ariza Botero F. A hemi-nested PCR assay for the detection and identification of vesicular stomatitis virus nucleic acid. J. Virol. Methods. 50:1994;11-20.
17. Holland J.J., Spindler K., Horodyski F., Grabau E., Nichol S., VandePol S. Rapid evolution of RNA genomes. Science. 215:1982;1577-1585.
18. Inoue T., Suzuki T., Sekigchi K. The complete nucleotide sequence of swine vesicular disease virus. J. Gen. Virol. 70:1989;919-934.
19. Knowles, N.J., Sellers, R.F., 1994. Swine vesicular disease. In: Beran, G.W. (Ed.), Handbook of Zoonoses, section B: Viral, 2nd edn. CRC Press, Boca Raton, FL, pp. 437-444.
20. Kwok S., Kellogg D.E., McKinney N., Spasic D., Goda L., Levenson C., Sninsky J.J. Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucleic Acids Res. 18:1990;999-1005.
21. Lin F., Mackay D.K.J., Knowles N.J. Detection of swine vesicular disease virus RNA by reverse transcription-polymerase chain reaction. J. Virol. Methods. 65:1997;111-121.
22. Locher F., Suryanarayana V.V.S., Tratschin J.D. Rapid detection and characterization of foot-and-mouth disease virus by restriction enzyme and nucleotide sequence analysis of PCR products. J. Clin. Microbiol. 33:1995;440-444.
23. Maragon S. The 1993 Italian foot-and-mouth disease epidemic: epidemiological features of the four outbreaks identified in Verona province (Veneto region). Vet. Rec. 135:1994;53-57.
24. Marquardt O., Ohlinger V.F. Differential diagnosis and genetic analysis of the antigenically related swine vesicular disease virus and coxsackieviruses. J. Virol. Methods. 53:1995;189-199.
25. Meyer R.F., Brown C.C., House C., House J.A., Molitor T.W. Rapid and sensitive detection of foot-and-mouth disease virus in tissues by enzymatic RNA amplification of the polymerase gene. J. Virol. Methods. 34:1991;161-172.
26. Nichol S.T., Rowe J.E., Fitch W.M. Glycoprotein evolution of vesicular stomatitis virus New Jersey. Virology. 168:1989;281-291.
27. Pereira, H.G., 1981. Foot-and-mouth disease. In: Gibbs, E.P.J. (Ed.), Virus Disease of Food Animals, vol. 2. Academic Press, London, pp. 333-363.
28. Pöyry T., Kinnunen L., Hyypiä T., Brown B., Horsnell C., Hovi T., Stanway G. Genetic and phylogenetic clustering of enteroviruses. J. Gen. Virol. 77:1996;1699-1717.
29. Rodrigo M.J., Dopazo J. Evolutionary analysis of picornavirus family. J. Mol. Evol. 39:1994;3662-3671.
30. Rodríguez A., Martínez-Salas E., Dopazo J., Dávila M., Sáiz J.C., Sobrino F. Primer design for specific diagnosis by PCR of highly variable RNA viruses: typing of foot-and-mouth disease virus. Virology. 189:1992;363-367.
31. Rodríguez L.L., Letchworth G.J., Spiropoulou C.F., Nichol S.T. Rapid detection of vesicular stomatitis virus New Jersey serotype in clinical samples by using polymerase chain reaction. J. Clin. Microbiol. 31:1993;2016-2020.
32. Rodríguez A., Núñez J.I., Nolasco G., Ponz F., Sobrino F., de Blas C. Direct PCR detection of foot-and-mouth disease virus. J. Virol. Methods. 47:1994;345-349.
33. Seechurn P., Knowles N.J., McCauley J.W. The complete nucleotide sequence of a pathogenic swine vesicular disease virus. Virus Res. 16:1990;255-274.
34. Sutmoller, P., 1992. Vesicular diseases. In: Foreign Animal Diseases. Committee on Foreign Animal Diseases of the United States Animal Health Association, Richmond, VA, Food and Agriculture Organisation of the United Nations (FAO), pp. 368-382.
35. Vangrysperre W., De Clercq K. Rapid and sensitive polymerase chain reaction based detection and typing of foot-and-mouth disease virus in clinical samples and cell culture isolates, combined with a simultaneous differentiation with other genomically and/or symptomatically related viruses. J. Virol. Methods. 141:1996;331-344.
36. Wagner, R.R., 1987. Rhabdovirus biology and infection: an overview. In: Wagner, R.R. (Ed.), The Rhabdovirus. Plenum, New York, pp. 9-74.
37. Zhang G., Wilsden G., Knowles N.J., McCauley J.W. Complete nucleotide sequence of a coxsackie B5 virus and its relationship to swine vesicular disease virus. J. Gen. Virol. 74:1993;845-853.