-
1
-
-
0025878149
-
Amino acid substitution matrices from an information theoretic perspective
-
Altschul,S.F. (1991) Amino acid substitution matrices from an information theoretic perspective. J. Mol. Biol., 219, 555-565.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 555-565
-
-
Altschul, S.F.1
-
2
-
-
0029889221
-
Local alignment statistics
-
Altschul,S.F. and Gish,G. (1996) Local alignment statistics. Methods Enzymol., 266, 460-480.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 460-480
-
-
Altschul, S.F.1
Gish, G.2
-
3
-
-
0032759101
-
Identification and characterization of large galactosyltransferase gene families: Galactosyltransferases for all functions
-
Amado,M., Almeida,R., Schwientek,T. and Clausen,H. (1999) Identification and characterization of large galactosyltransferase gene families: galactosyltransferases for all functions. Biochim. Biophys. Acta, 1473, 35-53.
-
(1999)
Biochim. Biophys. Acta
, vol.1473
, pp. 35-53
-
-
Amado, M.1
Almeida, R.2
Schwientek, T.3
Clausen, H.4
-
4
-
-
3242879778
-
Efficient tree-matching methods for accurate carbohydrate database queries
-
Aoki,K.F., Yamaguchi,A., Okuno,Y., Akutsu,T., Ueda,N., Kanehisa,M. and Mamitsuka,H. (2003) Efficient tree-matching methods for accurate carbohydrate database queries. Genome Informatics, 14 134-143.
-
(2003)
Genome Informatics
, vol.14
, pp. 134-143
-
-
Aoki, K.F.1
Yamaguchi, A.2
Okuno, Y.3
Akutsu, T.4
Ueda, N.5
Kanehisa, M.6
Mamitsuka, H.7
-
5
-
-
3242885434
-
KCaM (KEGG Carbohydrate Matcher): A software tool for analyzing the structures of carbohydrate sugar chains
-
Aoki,K.F., Yamaguchi,A., Ueda,N., Akutsu,T., Mamitsuka,H., Goto,S. and Kanehisa,M. (2004) KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Res., 32, W267-W272.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Aoki, K.F.1
Yamaguchi, A.2
Ueda, N.3
Akutsu, T.4
Mamitsuka, H.5
Goto, S.6
Kanehisa, M.7
-
6
-
-
12444291017
-
Antibody domain exchange is an immunological solution to carbohydrate cluster recognition
-
Calarese,D.A., Scanlan,C.N., Zwick,M.B., Deechongkit,S., Mimura,Y., Kunert,R., Zhu,P., Wormald,MR., Stanfield,R.L., Roux,K.H. et al. (2003) Antibody domain exchange is an immunological solution to carbohydrate cluster recognition. Science, 300, 2065-2071.
-
(2003)
Science
, vol.300
, pp. 2065-2071
-
-
Calarese, D.A.1
Scanlan, C.N.2
Zwick, M.B.3
Deechongkit, S.4
Mimura, Y.5
Kunert, R.6
Zhu, P.7
Wormald, M.R.8
Stanfield, R.L.9
Roux, K.H.10
-
7
-
-
0037250530
-
Glyco-SuiteDB: A curated relational database of glycoprotein glycan structures and their biological sources. 2003 update
-
Cooper,C.A., Joshi,H.J., Harrison,M.J., Wilkins,M.R. and Packer,N.H. (2003) Glyco-SuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update. Nucleic Acids Res., 31, 511-513.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 511-513
-
-
Cooper, C.A.1
Joshi, H.J.2
Harrison, M.J.3
Wilkins, M.R.4
Packer, N.H.5
-
8
-
-
0020649886
-
Establishing homologies in protein sequences
-
Dayhoff,M.O., Barker,W.C. and Hunt,L.T. (1983) Establishing homologies in protein sequences. Methods Enzymol., 91, 524.
-
(1983)
Methods Enzymol.
, vol.91
, pp. 524
-
-
Dayhoff, M.O.1
Barker, W.C.2
Hunt, L.T.3
-
9
-
-
0035825644
-
Negative regulation of T-cell activation and autoimmunity by Mgat5 N-glycosylation
-
Demetriou,M., Granovsky,M., Quaggin,S. and Dennis,J.W. (2001) Negative regulation of T-cell activation and autoimmunity by Mgat5 N-glycosylation. Nature, 409, 733-739.
-
(2001)
Nature
, vol.409
, pp. 733-739
-
-
Demetriou, M.1
Granovsky, M.2
Quaggin, S.3
Dennis, J.W.4
-
10
-
-
0015228630
-
The enzymic synthesis of ganglioside. IV. UDP-N-acetylgalactosamine: (N-acetylneuraminyl)-galactosylglucosyl ceramide N-acetylgalactosaminyltransferase in rat brain
-
Dicesare,J.L. and Dain,J.A. (1971) The enzymic synthesis of ganglioside. IV. UDP-N-acetylgalactosamine: (N acetylneuraminyl)-galactosylglucosyl ceramide N acetylgalactosaminyltransferase in rat brain. Biochim. Biophys. Acta, 231, 385-393.
-
(1971)
Biochim. Biophys. Acta
, vol.231
, pp. 385-393
-
-
Dicesare, J.L.1
Dain, J.A.2
-
11
-
-
0024387025
-
The complex carbohydrate structure database
-
Doubet,S., Bock,K., Smith,D., Darvill,A. and Albersheim,P. (1989) The complex carbohydrate structure database. Trends Biochem. Sci., 14, 475-477.
-
(1989)
Trends Biochem. Sci.
, vol.14
, pp. 475-477
-
-
Doubet, S.1
Bock, K.2
Smith, D.3
Darvill, A.4
Albersheim, P.5
-
12
-
-
0036052503
-
Targeting glycosylation as a therapeutic approach
-
Dwek,R.A., Butters,T.D., Platt,F.M. and Zitzmann,N. (2002) Targeting glycosylation as a therapeutic approach. Nat. Rev. Drug Discov., 1, 65-75.
-
(2002)
Nat. Rev. Drug Discov.
, vol.1
, pp. 65-75
-
-
Dwek, R.A.1
Butters, T.D.2
Platt, F.M.3
Zitzmann, N.4
-
14
-
-
0034851054
-
The α-gal epitope (Galα1-3Galβ1-4GlcNAc-R) in xenotransplantation
-
Galili,U. (2001) The α-gal epitope (Galα1-3Galβ1-4GlcNAc-R) in xenotransplantation. Biochimie, 83 557-563.
-
(2001)
Biochimie
, vol.83
, pp. 557-563
-
-
Galili, U.1
-
15
-
-
0003562954
-
A simple generalisation of the area under the ROC curve for multiple classification problems
-
Hand,D.J. and Till,R.J. (2001) A simple generalisation of the area under the ROC curve for multiple classification problems. Machine Learning, 45, 171-186.
-
(2001)
Machine Learning
, vol.45
, pp. 171-186
-
-
Hand, D.J.1
Till, R.J.2
-
16
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff,S. and Henikoff,J.G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci. USA, 89, 10915-10919.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
17
-
-
0032516062
-
Immune regulation by the ST6Gal sialyltransferase
-
Hennet,T., Chiu,D., Paulson,J.C. and Marth,J.D. (1998) Immune regulation by the ST6Gal sialyltransferase. Proc. Natl Acad. Sci. USA 95, 4504-4509.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 4504-4509
-
-
Hennet, T.1
Chiu, D.2
Paulson, J.C.3
Marth, J.D.4
-
18
-
-
84960387766
-
Local similarity in RNA secondary structures
-
IEEE Computer Society Press, Washington, DC
-
Höchsmann,M., Toller,T., Giegerich,R. and Kurtz,S. (2003) Local similarity in RNA secondary structures. In Proceedings of the Computational Systems Bioinformatics Conference (CSB 2003). IEEE Computer Society Press, Washington, DC, pp.159-168.
-
(2003)
Proceedings of the Computational Systems Bioinformatics Conference (CSB 2003)
, pp. 159-168
-
-
Höchsmann, M.1
Toller, T.2
Giegerich, R.3
Kurtz, S.4
-
19
-
-
84957024825
-
A fast algorithm for optimal alignment between similar ordered trees
-
Amir,A. and Landau,G.M. (eds) Jerusalem, Israel, July 1-4, LNCS 2089. Springer-Verlag, Berlin, Heidelberg
-
Jannson,J. and Lingas,A. (2001) A fast algorithm for optimal alignment between similar ordered trees. In Amir,A. and Landau,G.M. (eds), Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching (CPM 2001), Jerusalem, Israel, July 1-4, LNCS 2089 Springer-Verlag, Berlin, Heidelberg, pp. 232-240.
-
(2001)
Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching (CPM 2001)
, pp. 232-240
-
-
Jannson, J.1
Lingas, A.2
-
20
-
-
0029309548
-
Alignment of trees - An alternative to tree edit
-
Jiang,T., Wang,L. and Zhang,K. (1995) Alignment of trees - an alternative to tree edit. Theoret. Comput. Sci., 143, 137-148.
-
(1995)
Theoret. Comput. Sci.
, vol.143
, pp. 137-148
-
-
Jiang, T.1
Wang, L.2
Zhang, K.3
-
21
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa,M., Goto,S., Kawashima,S., Okuno,Y. and Hattori,M. (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res., 32, D277-D280.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
22
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
Karlin,S. and Altschul,S.F. (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci. USA, 87, 2264-2268.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 2264-2268
-
-
Karlin, S.1
Altschul, S.F.2
-
23
-
-
0034824671
-
Edit distance between two RNA structures
-
Leuven, Belguim, May 14-18. ACM Press
-
Lin,G., Ma,B. and Zhang,K. (2001) Edit distance between two RNA structures. In Proceedings of the Conference on Computational Molecular Biology - Research in Computational Biology (RECOMB 2001), Leuven, Belguim, May 14-18. ACM Press, pp. 211-220.
-
(2001)
Proceedings of the Conference on Computational Molecular Biology - Research in Computational Biology (RECOMB 2001)
, pp. 211-220
-
-
Lin, G.1
Ma, B.2
Zhang, K.3
-
24
-
-
0036081123
-
SWEET-DB: An attempt to create annotated data collections for carbohydrates
-
Loss,A., Bunsmann,P., Bohne,A., Loss,A., Schwarzer,E., Lang,E. and von der Lieth,C.W. (2002) SWEET-DB: an attempt to create annotated data collections for carbohydrates. Nucleic Acids Res., 30, 405-408.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 405-408
-
-
Loss, A.1
Bunsmann, P.2
Bohne, A.3
Loss, A.4
Schwarzer, E.5
Lang, E.6
von der Lieth, C.W.7
-
25
-
-
0042266719
-
A genetic approach to mammalian glycan function
-
Lowe,J.B. and Marth,J.D. (2003) A genetic approach to mammalian glycan function. Annu. Rev. Biochem., 72, 643-691.
-
(2003)
Annu. Rev. Biochem.
, vol.72
, pp. 643-691
-
-
Lowe, J.B.1
Marth, J.D.2
-
26
-
-
0033530559
-
The alpha1-6-fucosyltransferase gene and its biological significance
-
Miyoshi,E., Noda,K., Yamaguchi,Y., Inoue,S., Ikeda,Y., Wang,W., Ko,J.H., Uozumi,N., Li,W. and Taniguchi,N. (1999) The alpha1-6-fucosyltransferase gene and its biological significance. Biochim. Biophys. Acta, 1473, 9-20.
-
(1999)
Biochim. Biophys. Acta
, vol.1473
, pp. 9-20
-
-
Miyoshi, E.1
Noda, K.2
Yamaguchi, Y.3
Inoue, S.4
Ikeda, Y.5
Wang, W.6
Ko, J.H.7
Uozumi, N.8
Li, W.9
Taniguchi, N.10
-
27
-
-
0141919565
-
Relationship between elevated FX expression and increased production of GDP-L-fucose, a common donor substrate for fucosylation in human hepatocellular carcinoma and hepatoma cell lines
-
Noda,K., Miyoshi,E., Gu,J., Gao,C.-X., Nakahara,S., Kitada,T., Honke,K., Suzuki,K., Yoshihara,H., Yoshikawa,K. et al. (2003) Relationship between elevated FX expression and increased production of GDP-L-fucose, a common donor substrate for fucosylation in human hepatocellular carcinoma and hepatoma cell lines. Cancer Res. 63, 6282-6289.
-
(2003)
Cancer Res.
, vol.63
, pp. 6282-6289
-
-
Noda, K.1
Miyoshi, E.2
Gu, J.3
Gao, C.-X.4
Nakahara, S.5
Kitada, T.6
Honke, K.7
Suzuki, K.8
Yoshihara, H.9
Yoshikawa, K.10
-
28
-
-
0016424695
-
Minimal mutation trees of sequences
-
Sankoff,D. (1975) Minimal mutation trees of sequences. SIAM J. Appl. Math., 28, 35-42.
-
(1975)
SIAM J. Appl. Math.
, vol.28
, pp. 35-42
-
-
Sankoff, D.1
-
29
-
-
0043122932
-
RNA-related tools on the Bielefeld bioinformatics server
-
Sczyrba,A., Krüger, J., Mersch,H., Kurtz,S. and Giegerich,R. (2003) RNA-related tools on the Bielefeld bioinformatics server. Nucleic Acids Res., 31, 3767-3770.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3767-3770
-
-
Sczyrba, A.1
Krüger, J.2
Mersch, H.3
Kurtz, S.4
Giegerich, R.5
-
30
-
-
0025187499
-
Comparing multiple RNA secondary structures using tree comparisons
-
Shapiro,B.A. and Zhang,K.Z. (1990) Comparing multiple RNA secondary structures using tree comparisons. Comput. Appl. Biosci., 6, 309-318.
-
(1990)
Comput. Appl. Biosci.
, vol.6
, pp. 309-318
-
-
Shapiro, B.A.1
Zhang, K.Z.2
-
31
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith,T.F. and Waterman,M.S. (1981a) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
33
-
-
0022431785
-
The statistical distribution of nucleic acid similarities
-
Smith,T.F., Waterman,M.S. and Burks,C. (1985) The statistical distribution of nucleic acid similarities. Nucleic Acids Res., 13, 645-656.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 645-656
-
-
Smith, T.F.1
Waterman, M.S.2
Burks, C.3
-
34
-
-
0030064740
-
Influence of core fircosylation on the flexibility of a biantennary N-linked oligosaccharide
-
Stubbs,H.J., Lih,J.J., Gustafson,T.L. and Rice,K.G. (1996) Influence of core fircosylation on the flexibility of a biantennary N-linked oligosaccharide. Biochemistry, 35, 937-947.
-
(1996)
Biochemistry
, vol.35
, pp. 937-947
-
-
Stubbs, H.J.1
Lih, J.J.2
Gustafson, T.L.3
Rice, K.G.4
-
35
-
-
0018491659
-
The tree-to-tree correction problem
-
Tai,K. (1979) The tree-to-tree correction problem. J. ACM 26, 422-433.
-
(1979)
J. ACM
, vol.26
, pp. 422-433
-
-
Tai, K.1
-
36
-
-
0004106191
-
-
(eds) Cold Spring Harbor Laboratory Press, New York
-
Varki,A. et al., (eds) (1999) Essentials of Glycobiology. Cold Spring Harbor Laboratory Press, New York.
-
(1999)
Essentials of Glycobiology
-
-
Varki, A.1
-
37
-
-
0036193564
-
Carbohydrate microarrays for the recognition of cross-reactive molecular markers of microbes and host cells
-
Wang,D., Liu,S., Trummer,B.J., Deng,C. and Wang,A. (2002) Carbohydrate microarrays for the recognition of cross-reactive molecular markers of microbes and host cells. Nat. Biotechnol., 20, 275-281.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 275-281
-
-
Wang, D.1
Liu, S.2
Trummer, B.J.3
Deng, C.4
Wang, A.5
-
38
-
-
0000307499
-
On the editing distance between unordered labeled trees
-
Zhang,Z., Statman,R. and Shasha,D. (1992) On the editing distance between unordered labeled trees. Inf. Process. Lett., 42, 133-139.
-
(1992)
Inf. Process. Lett.
, vol.42
, pp. 133-139
-
-
Zhang, Z.1
Statman, R.2
Shasha, D.3
|