-
1
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini,Y. and Hochberg,Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B (Methodological), 57, 289-300.
-
(1995)
J. R. Stat. Soc. Ser. B (Methodological)
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
2
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad,B.M., Irizarry,R.A., Astrand,M. and Speed,T.P. (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics, 19, 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
3
-
-
0029852580
-
Use of a cDNA microarray to analyse gene expression patterns in human cancer
-
DeRisi,J., Penland,L., Brown,P.O., Bittner,M.L., Meltzer,P.S., Ray,M., Chen,Y., Su,Y.A. and Trent,J.M. (1996) Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nat. Genet., 14, 457-460.
-
(1996)
Nat. Genet.
, vol.14
, pp. 457-460
-
-
DeRisi, J.1
Penland, L.2
Brown, P.O.3
Bittner, M.L.4
Meltzer, P.S.5
Ray, M.6
Chen, Y.7
Su, Y.A.8
Trent, J.M.9
-
4
-
-
0036376993
-
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
-
Dudoit,S., Yang,Y.H., Callow,M.J. and Speed,T.P. (2002) Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Stat. Sin., 12, 111-139.
-
(2002)
Stat. Sin.
, vol.12
, pp. 111-139
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.J.3
Speed, T.P.4
-
5
-
-
3242708140
-
Least angle regression
-
Efron,B., Hastie,T., Johnstone,I. and Tibshirani,R. (2004) Least angle regression. Ann. Stat., 32, 407-499.
-
(2004)
Ann. Stat.
, vol.32
, pp. 407-499
-
-
Efron, B.1
Hastie, T.2
Johnstone, I.3
Tibshirani, R.4
-
6
-
-
1542784653
-
Empirical Bayes analysis of a microarray experiment
-
Efron,B., Tibshirani,R., Storey,J.D. and Tusher,V. (2001) Empirical Bayes analysis of a microarray experiment. J. Am. Stat. Assoc., 96, 1151-1160.
-
(2001)
J. Am. Stat. Assoc.
, vol.96
, pp. 1151-1160
-
-
Efron, B.1
Tibshirani, R.2
Storey, J.D.3
Tusher, V.4
-
7
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub,T.R., Slonim,D.K., Tamayo,P., Huard,C., Gaasenbeek,M., Mesirov,J.P., Coller,H., Loh,M.L., Downing,J.R., Caligiuri,M.A., Bloomfield,C.D. and Lander,E.S. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science, 286, 531-537 (http://www.sciencemag.org/cgi/content/abstract/286/5439/531).
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
9
-
-
0030305457
-
R: A language for data analysis and graphics
-
Ihaka,R. and Gentleman,R. (1996) R: a language for data analysis and graphics. J. Comput. Graph. Stat., 5, 299-314.
-
(1996)
J. Comput. Graph. Stat.
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
10
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart,D.J., Dong,H., Byrne,MC., Follettie,M.T., Gallo,M.V, Chee,M.S., Miumann,M., Wang,C., Kobayashi,M., Horton,H. and Brown,E.L. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol., 14, 1675-1680.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Miumann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
11
-
-
0035999977
-
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
-
Pan,W. (2002) A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics, 18, 546-554 (http://bioinformatics.oupjournals.org/cgi/content/abstract/18/4/546).
-
(2002)
Bioinformatics
, vol.18
, pp. 546-554
-
-
Pan, W.1
-
12
-
-
0041592555
-
On the use of permutation in and the performance of a class of nonparametric methods to detect differential gene expression
-
Pan,W. (2003) On the use of permutation in and the performance of a class of nonparametric methods to detect differential gene expression. Bioinformatics, 19, 1333-1340 (http://bioinformatics.oupjournals.org/cgi/content/abstract/19/11/1333).
-
(2003)
Bioinformatics
, vol.19
, pp. 1333-1340
-
-
Pan, W.1
-
13
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Article 3
-
Smyth,G.K. (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol., 3, Article 3.
-
(2004)
Stat. Appl. Genet. Mol. Biol.
, vol.3
-
-
Smyth, G.K.1
-
14
-
-
0038048164
-
Statistical issues in microarray data analysis
-
Brownstein,M.J. and Khodursky,A.B. (eds), Human Press
-
Smyth,G.K., Yang,Y.H. and Speed,T.P. (2003) Statistical issues in microarray data analysis. In Brownstein,M.J. and Khodursky,A.B. (eds), Functional Genomics: Methods and Protocols. Human Press, Vol. 224, pp. 111-136.
-
(2003)
Functional Genomics: Methods and Protocols
, vol.224
, pp. 111-136
-
-
Smyth, G.K.1
Yang, Y.H.2
Speed, T.P.3
-
17
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher,V.G., Tibshirani,R. and Chu,G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA, 98, 5116-5121.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
19
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang,Y.H., Dudoit,S., Luu,P., Lin,D.M., Peng,V., Ngai,J. and Speed,T.P. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res., 30, e15.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
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