Voro3D: 3D Voronoi tessellations applied to protein structures

Bioinformatics

Volumn 21, Issue 8, 2005, Pages 1715-1716

  Dupuis, Franck ^a   Sadoc, Jean François ^b   Jullien, Rémi ^c   Angelov, Borislav ^b,d   Mornon, Jean Paul ^a  

^a UNIVERSITÉ PIERRE ET MARIE CURIE   (France)

^b UNIVERSITÉ PARIS SUD   (France)

^c CNRS   (France)

^d INSTITUTE OF BIOPHYSICS AND BIOMEDICAL ENGINEERING   (Bulgaria)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; LIGAND; SOLVENT;

ARTICLE; CALCULATION; COMPUTER MODEL; COMPUTER SYSTEM; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; THREE DIMENSIONAL IMAGING;

EID: 17444368331     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth365     Document Type: Article

References (6)

1. Angelov,B., Sadoc,J.F., Jullien,R., Soyer,A., Mornon,J.P. and Chomilier,J. (2002) Nonatomic solvent-driven Voronoi tessellation of proteins: an open tool to analyze protein folds. Proteins, 49 446-456.
2. Dupuis,F., Sadoc,J.F. and Mornon,J.P. (2004) Protein secondary structure assignment through Voronoi tessellation. Proteins 55, 519-528.
3. Poupon,A. (2004) Voronoi and Voronoi-related tessellations in studies of protein structure and interaction. Curr. Opin. Struct. Biol., 14, 233-241.
4. Richards,F.M. (1974) The interpretation of protein structures: total volume, group volume distributions and packing density. J. Mol. Biol., 82, 1-14.
5. Sadoc,J.F., Jullien,R. and Rivier,N. (2003) The Laguerre polyhedral decomposition: application to protein folds. Eur. Phys. J. B, 33, 355-363.
6. Soyer,A., Chomilier,J., Mornon,J.P., Jullien,R. and Sadoc,J.F. (2000) Voronoi tessellation reveals the condensed matter character of folded proteins. Phys. Rev. Lett., 85, 3532-3535.