Pseudonocardia dioxanivorans sp. nov., a novel actinomycete that grows on 1,4-dioxane

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 2, 2005, Pages 593-598

  Mahendra, Shaily ^a   Alvarez Cohen, Lisa ^a  

^a Berkeley   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CARCINOGEN; DIAMINOPIMELIC ACID; DIOXANE; DNA 16S; FATTY ACID; GASOLINE; MENAQUINONE; NITROUS OXIDE; TETRAHYDROFURAN; TUBERCULOSTEARIC ACID;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CELL CULTURE; CHEMOTAXONOMY; DNA CONTENT; GENE SEQUENCE; INDUSTRIAL SLUDGE; LIPID COMPOSITION; MOLECULAR GENETICS; MOLECULAR PHYLOGENY; NEW SPECIES; NITROGEN FIXATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PSEUDONOCARDIA DIOXANIVORANS; PSEUDONOCARDIACEAE; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; SPECIES IDENTIFICATION; STRAIN DIFFERENCE; WATER CONTAMINATION;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; DIOXANES; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; INDUSTRIAL WASTE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE;

POSIBACTERIA; PSEUDONOCARDIA DIOXANIVORANS; PSEUDONOCARDIA HALOPHOBICA; PSEUDONOCARDIA HYDROCARBONOXYDANS; PSEUDONOCARDIA SULFIDOXYDANS; UNCULTURED ACTINOMYCETE;

EID: 16844379666     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63085-0     Document Type: Article

References (32)

1. Brusseau, G. A., Tsien, H. C., Hanson, R. S. & Wackett, L. P. (1990). Optimization of trichloroethylene oxidation by methanotrophs and the use of a colorimetric assay to detect soluble methane monooxygenase activity. Biodegradation 1, 19-29.
2. Chu, K. H. & Alvarez-Cohen, L. (1996). TCE degradation by methane oxidizing cultures grown with various nitrogen sources. Water Environ Res 68, 76-82.
3. Dojka, M. A., Hugenholtz, P., Haack, S. K. & Pace, N. R. (1998). Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64, 3869-3877.
4. Embley, T. M., Smida, J. & Stackebrandt, E. (1988). The phylogeny of mycolate-less wall chemotype IV actinomycetes and the description of Pseudonocardiaceae fam. nov. Syst Appl Microbiol 11, 44-52.
5. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Kreig, N. R. (editors) (1994). Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology.
8. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
9. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
10. Henssen, A. (1957). Beitrage zur Morphologie und Systematik ter thermophilen Actinomyceten. Arch Mikrobiol 26, 373-414 (in German).
11. Huang, Y., Wang, L., Lu, Z., Hong, L., Liu, Z., Tan, G. Y. & Goodfellow, M. (2002). Proposal to combine the genera Actinobispora and Pseudonocardia in an emended genus Pseudonocardia, and description of Pseudonocardia zijingensis sp. nov. Int J Syst Evol Microbiol 52, 977-982.
12. Juteau, P., Larocque, R., Rho, D. & LeDuy, A. (1999). Analysis of the relative abundance of different types of bacteria capable of toluene degradation in a compost biofilter. Appl Microbiol Biotechnol 52, 863-868.
13. Kampfer, P. & Kroppenstedt, R. M. (2004). Pseudonocardia benzenivorans sp. nov. Int J Syst Evol Microbiol 54, 749-751.
14. Klausmeier, R. E. & Osman, J. L. (1976). Biodegradation of plastics by actinomycetes. In Proceedings of the Third International Biodegradation Symposium, pp. 815-818. Edited by J. M. Sharpley & A. P. Kaplan. London: Applied Science Publishers.
15. Kohlweyer, U., Thiemer, B., Schrader, T. & Andreesen, J. R. (2000). Tetrahydrofuran degradation by a newly isolated culture of Pseudonocardia sp. strain K1. FEMS Microbiol Lett 186, 301-306.
16. Kroppenstedt, R. M. (1992). The genus Nocardiopsis In The Prokaryotes, 2nd edn, pp. 1139-1156. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. Heidelberg: Springer.
17. Lechevalier, M. P., Prauser, H., Labeda, D. P. & Ruan, J.-S. (1986). Two new genera of nocardioform actinomycetes: Amycolata gen. nov. and Amycolatopsis gen. nov. Int J Syst Bacteriol 36, 29-37.
18. Lee, S.-B., Strand, S. E., Stensel, H. D. & Herwig, R. P. (2004). Pseudonocardia chloroethenivorans sp. nov., a chloroethene degrading actinomycete. Int J Syst Evol Microbiol 54, 131-139.
19. Lontoh, S. & Semrau, J. D. (1998). Methane and trichloroethylene degradation by Methylosinus trichosporium OB3b expressing particulate methane monooxygenase. Appl Environ Microbiol 64, 1106-1114.
20. McCarthy, A. J. & Williams, S. T. (1992). Actinomycetes as agents of biodegradation in the environment - a review. Gene 115, 189-192.
21. Mohr, T. K. G. (2001). Solvent Stabilizers. San Jose, CA: Santa Clara Valley Water District.
22. Parales, R. E., Adamus, J. E., White, N. & May, H. D. (1994). Degradation of 1,4-dioxane by an actinomycete in pure culture. Appl Environ Microbiol 60, 4527-4530.
23. Pasti-Grigsby, M. B., Lewis, T. A., Crawford, D. L. & Crawford, R. L. (1996). Transformation of 2,4,6-trinitrotoluene (TNT) by actino-mycetes isolated from TNT-contaminated and uncontaminated environments. Appl Environ Microbiol 62, 1120-1123.
24. Reichert, K., Lipski, A., Pradella, S., Stackebrandt, E. & Altendorf, K. (1998). Pseudonocardia asaccharolytica sp. nov. and Pseudonocardia sulfidoxydans sp. nov., two new dimethyl disulfide-degrading actinomycetes and emended description of the genus Pseudonocardia. Int J Syst Bacteriol 48, 441-449.
25. Rhuland, L. E., Work, E., Denman, R. F. & Hoare, D. S. (1955). The behavior of the isomers of α,E-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77, 4844-4846.
26. Richardson, R. E., Bhupathiraju, V. K., Song, D. L., Goulet, T. A. & Alvarez-Cohen, L. (2002). Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques. Environ Sci Technol 36, 2652-2662.
27. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
28. Tanner, R. S. (1997). Cultivation of bacteria and fungi. In Manual of Environmental Microbiology, pp. 52-62. Edited by C. J. Hurst, A. R. Knudsen, M. J. McInerney, L. D. Stetzenbach & M. V. Waller. Washington, DC: American Society for Microbiology.
29. Wackett, L. P., Brusseau, G. A., Householder, S. R. & Hanson, R. S. (1989). Survey of microbial oxygenases: trichloroethylene degradation by propane-oxidizing bacteria. Appl Environ Microbiol 55, 2960-2964.
30. Warwick, S., Bowen, T., McVeigh, H. & Embley, T. M. (1994). A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia. Int J Syst Bacteriol 44, 293-299.
31. White, D. C. & Ringelberg, D. B. (1998). Signature lipids biomarker analysis. In Techniques in Microbial Ecology, pp. 255-272. Edited by R. S. Burlage, R. Atlas, D. Stahl, G. Geesey & G. Sayler. New York: Oxford University Press.
32. Zhou, W. & Zimmermann, W. (1993). Decolorization of industrial effluents containing reactive dyes by actinomycetes. FEMS Microbiol Lett 107, 157-161.