메뉴 건너뛰기




Volumn 72, Issue 3, 2004, Pages 396-405

Lack of Clinical Significance of Variability in the Internal Ribosome Entry Site of Hepatitis C Virus

Author keywords

5 NCR; HCV; Quasi species; Variants; Viral load

Indexed keywords

ALPHA2B INTERFERON; POLYPROTEIN; RIBAVIRIN; UNTRANSLATED RNA; VIRUS RNA;

EID: 1642539185     PISSN: 01466615     EISSN: None     Source Type: Journal    
DOI: 10.1002/jmv.20021     Document Type: Article
Times cited : (19)

References (45)
  • 1
    • 0031003235 scopus 로고    scopus 로고
    • The La antigen binds 5′ noncoding region of the hepatitis C virus RNA in the context of the initiator AUG codon and stimulates internal ribosome entry site-mediated translation
    • Ali N, Siddiqui A. 1997. The La antigen binds 5′ noncoding region of the hepatitis C virus RNA in the context of the initiator AUG codon and stimulates internal ribosome entry site-mediated translation. Proc Natl Acad Sci USA 94:2249-2254.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 2249-2254
    • Ali, N.1    Siddiqui, A.2
  • 2
    • 0026728652 scopus 로고
    • Sequence analysis of the 5′ noncoding region of hepatitis C virus
    • Bukh J, Purcell RH, Miller RH. 1992. Sequence analysis of the 5′ noncoding region of hepatitis C virus. Proc Natl Acad Sci USA 89:4942-4946.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 4942-4946
    • Bukh, J.1    Purcell, R.H.2    Miller, R.H.3
  • 4
    • 0024509701 scopus 로고
    • Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome
    • Choo QL, Kuo G, Weiner AJ, Overby LR, Bradley DW, Houghton M. 1989. Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 244:359-362.
    • (1989) Science , vol.244 , pp. 359-362
    • Choo, Q.L.1    Kuo, G.2    Weiner, A.J.3    Overby, L.R.4    Bradley, D.W.5    Houghton, M.6
  • 5
    • 0031716752 scopus 로고    scopus 로고
    • Translation efficiencies of the 5′ untranslated region from representatives of the six major geno-types of hepatitis C virus using a novel bicistronic reporter assay system
    • Collier AJ, Tang S, Elliott RM. 1998. Translation efficiencies of the 5′ untranslated region from representatives of the six major geno-types of hepatitis C virus using a novel bicistronic reporter assay system. J Gen Virol 79:2359-2366.
    • (1998) J Gen Virol , vol.79 , pp. 2359-2366
    • Collier, A.J.1    Tang, S.2    Elliott, R.M.3
  • 8
    • 0025146291 scopus 로고
    • Enhanced detection by PCR of hepatitis C virus RNA
    • Garson JA, Ring C, Tuke P, Tedder RS. 1990. Enhanced detection by PCR of hepatitis C virus RNA. Lancet 336:878-879.
    • (1990) Lancet , vol.336 , pp. 878-879
    • Garson, J.A.1    Ring, C.2    Tuke, P.3    Tedder, R.S.4
  • 9
    • 0026071871 scopus 로고
    • Characterization of the terminal regions of hepatitis C viral RNA: Identification of conserved sequences in the 5′ untranslated region and poly(A) tails at the 3′ end
    • Han JH, Shyamala V, Richman KH, Brauer MJ, Irvine B, Urdea MS, Tekamp-Olson P, Kuo G, Choo QL, Houghton M. 1991. Characterization of the terminal regions of hepatitis C viral RNA: Identification of conserved sequences in the 5′ untranslated region and poly(A) tails at the 3′ end. Proc Natl Acad Sci USA 88:1711-1715.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 1711-1715
    • Han, J.H.1    Shyamala, V.2    Richman, K.H.3    Brauer, M.J.4    Irvine, B.5    Urdea, M.S.6    Tekamp-Olson, P.7    Kuo, G.8    Choo, Q.L.9    Houghton, M.10
  • 10
    • 0029949695 scopus 로고    scopus 로고
    • Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA
    • Honda M, Brown EA, Lemon SM. 1996. Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA. RNA 2:955-968.
    • (1996) RNA , vol.2 , pp. 955-968
    • Honda, M.1    Brown, E.A.2    Lemon, S.M.3
  • 11
    • 0033032196 scopus 로고    scopus 로고
    • Natural variation in translational activities of the 5′ nontranslated RNAs of hepatitis C virus genotypes 1a and 1b: Evidence for a long-range RNA-RNA interaction outside of the internal ribosomal entry site
    • Honda M, Rijnbrand R, Abell G, Kim D, Lemon SM. 1999. Natural variation in translational activities of the 5′ nontranslated RNAs of hepatitis C virus genotypes 1a and 1b: Evidence for a long-range RNA-RNA interaction outside of the internal ribosomal entry site. J Virol 73:4941-4951.
    • (1999) J Virol , vol.73 , pp. 4941-4951
    • Honda, M.1    Rijnbrand, R.2    Abell, G.3    Kim, D.4    Lemon, S.M.5
  • 12
    • 0025787597 scopus 로고
    • Genomic structure of the human prototype strain H of hepatitis C virus: Comparison with American and Japanese isolates
    • Inchauspe G, Zebedee S, Lee DH, Sugitani M, Nasoff M, Prince AM. 1991. Genomic structure of the human prototype strain H of hepatitis C virus: Comparison with American and Japanese isolates. Proc Natl Acad Sci USA 88:10292-10296.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 10292-10296
    • Inchauspe, G.1    Zebedee, S.2    Lee, D.H.3    Sugitani, M.4    Nasoff, M.5    Prince, A.M.6
  • 13
    • 0033031389 scopus 로고    scopus 로고
    • Differences between hepatitis C virus 5′ untranslated region quasispecies in serum and liver
    • Jang SJ, Wang LF, Radkowski M, Rakela J, Laskus T. 1999. Differences between hepatitis C virus 5′ untranslated region quasispecies in serum and liver. J Gen Virol 80:711-716.
    • (1999) J Gen Virol , vol.80 , pp. 711-716
    • Jang, S.J.1    Wang, L.F.2    Radkowski, M.3    Rakela, J.4    Laskus, T.5
  • 14
    • 0033765890 scopus 로고    scopus 로고
    • Hepatitis C virus internal ribosome entry site (IRES) stem loop IIId contains a phylogenetically conserved GGG triplet essential for translation and IRES folding
    • Jubin R, Vantuno NE, Kieft JS, Murray MG, Doudna JA, Lau JY, Baroudy BM. 2000. Hepatitis C virus internal ribosome entry site (IRES) stem loop IIId contains a phylogenetically conserved GGG triplet essential for translation and IRES folding. J Virol 74:10430-10437.
    • (2000) J Virol , vol.74 , pp. 10430-10437
    • Jubin, R.1    Vantuno, N.E.2    Kieft, J.S.3    Murray, M.G.4    Doudna, J.A.5    Lau, J.Y.6    Baroudy, B.M.7
  • 15
    • 0037196387 scopus 로고    scopus 로고
    • Mutational analysis of the apical region of domain II of the HCV IRES
    • Kalliampakou KI, Psaridi-Linardaki L, Mavromara P. 2002. Mutational analysis of the apical region of domain II of the HCV IRES. FEBS Lett 511:79-84.
    • (2002) FEBS Lett , vol.511 , pp. 79-84
    • Kalliampakou, K.I.1    Psaridi-Linardaki, L.2    Mavromara, P.3
  • 16
    • 0030790922 scopus 로고    scopus 로고
    • Genetic analysis of internal ribosomal entry site on hepatitis C virus RNA: Implication for involvement of the highly ordered structure and cell type-specific transacting factors
    • Kamoshita N, Tsukiyama-Kohara K, Kohara M, Nomoto A. 1997. Genetic analysis of internal ribosomal entry site on hepatitis C virus RNA: Implication for involvement of the highly ordered structure and cell type-specific transacting factors. Virology 233: 9-18.
    • (1997) Virology , vol.233 , pp. 9-18
    • Kamoshita, N.1    Tsukiyama-Kohara, K.2    Kohara, M.3    Nomoto, A.4
  • 17
    • 0033600934 scopus 로고    scopus 로고
    • The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold
    • Kieft JS, Zhou K, Jubin R, Murray MG, Lau JY, Doudna JA. 1999. The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold. J Mol Biol 292:513-529.
    • (1999) J Mol Biol , vol.292 , pp. 513-529
    • Kieft, J.S.1    Zhou, K.2    Jubin, R.3    Murray, M.G.4    Lau, J.Y.5    Doudna, J.A.6
  • 18
    • 0035260658 scopus 로고    scopus 로고
    • Mechanism of ribosome recruitment by hepatitis C IRES RNA
    • Kieft JS, Zhou K, Jubin R, Doudna JA. 2001. Mechanism of ribosome recruitment by hepatitis C IRES RNA. RNA 7:194-206.
    • (2001) RNA , vol.7 , pp. 194-206
    • Kieft, J.S.1    Zhou, K.2    Jubin, R.3    Doudna, J.A.4
  • 19
    • 0037407151 scopus 로고    scopus 로고
    • Long-range RNA-RNA interaction between the 5′ nontranslated region and the corecoding sequences of hepatitis C virus modulates the IRES-dependent translation
    • Kim YK, Lee SH, Kim CS, Seol SK, Jang SK. 2003. Long-range RNA-RNA interaction between the 5′ nontranslated region and the corecoding sequences of hepatitis C virus modulates the IRES-dependent translation. RNA 9:599-606.
    • (2003) RNA , vol.9 , pp. 599-606
    • Kim, Y.K.1    Lee, S.H.2    Kim, C.S.3    Seol, S.K.4    Jang, S.K.5
  • 20
    • 0033932448 scopus 로고    scopus 로고
    • An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus
    • Kolupaeva VG, Pestova TV, Hellen CU. 2000. An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus. J Virol 74:6242-6250.
    • (2000) J Virol , vol.74 , pp. 6242-6250
    • Kolupaeva, V.G.1    Pestova, T.V.2    Hellen, C.U.3
  • 21
    • 0033755598 scopus 로고    scopus 로고
    • Comparative analysis of translation efficiencies of hepatitis C virus 5′ untranslated regions among intraindividual quasispecies present in chronic infection: Opposite behaviors depending on cell type
    • Laporte J, Malet I, Andrieu T, Thibault V, Toulme JJ, Wychowski C, Pawlotsky JM, Huraux JM, Agut H, Cahour A. 2000. Comparative analysis of translation efficiencies of hepatitis C virus 5′ untranslated regions among intraindividual quasispecies present in chronic infection: Opposite behaviors depending on cell type. J Virol 74:10827-10833.
    • (2000) J Virol , vol.74 , pp. 10827-10833
    • Laporte, J.1    Malet, I.2    Andrieu, T.3    Thibault, V.4    Toulme, J.J.5    Wychowski, C.6    Pawlotsky, J.M.7    Huraux, J.M.8    Agut, H.9    Cahour, A.10
  • 22
    • 0033912627 scopus 로고    scopus 로고
    • Cell type-specific enhancement of hepatitis C virus internal ribosome entry site-directed translation due to 5′ nontranslated region substitutions selected during passage of virus in lymphoblastoid cells
    • Lerat H, Shimizu YK, Lemon SM. 2000. Cell type-specific enhancement of hepatitis C virus internal ribosome entry site-directed translation due to 5′ nontranslated region substitutions selected during passage of virus in lymphoblastoid cells. J Virol 74:7024-7031.
    • (2000) J Virol , vol.74 , pp. 7024-7031
    • Lerat, H.1    Shimizu, Y.K.2    Lemon, S.M.3
  • 23
    • 0037332588 scopus 로고    scopus 로고
    • Role of the 5′-proximal stem-loop structure of the 5′ untranslated region in replication and translation of hepatitis C virus RNA
    • Luo G, Xin S, Cai Z. 2003. Role of the 5′-proximal stem-loop structure of the 5′ untranslated region in replication and translation of hepatitis C virus RNA. J Virol 77:3312-3318.
    • (2003) J Virol , vol.77 , pp. 3312-3318
    • Luo, G.1    Xin, S.2    Cai, Z.3
  • 24
    • 1642435094 scopus 로고    scopus 로고
    • Detection of tRNA-like structure through RNase P cleavage of viral internal ribosome entry site RNAs near the aug start triplet
    • Lyons AJ, Robertson HD. 2003. Detection of tRNA-like structure through RNase P cleavage of viral internal ribosome entry site RNAs near the aug start triplet. J Biol Chem 12:12.
    • (2003) J Biol Chem , vol.12 , pp. 12
    • Lyons, A.J.1    Robertson, H.D.2
  • 26
    • 0026538287 scopus 로고
    • Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: Quasispecies nature of HCV genome distribution
    • Martell M, Esteban JI, Quer J, Genesca J, Weiner A, Esteban R, Guardia J, Gomez J. 1992. Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: Quasispecies nature of HCV genome distribution. J Virol 66:3225-3229.
    • (1992) J Virol , vol.66 , pp. 3225-3229
    • Martell, M.1    Esteban, J.I.2    Quer, J.3    Genesca, J.4    Weiner, A.5    Esteban, R.6    Guardia, J.7    Gomez, J.8
  • 27
    • 0028217214 scopus 로고
    • Characterization of the 5′ noncoding and structural region of the hepatitis C virus genome from patients with non-A, non-B hepatitis responding differently to interferon treatment
    • Nakazawa T, Kato N, Ohkoshi S, Shibuya A, Shimotohno K. 1994. Characterization of the 5′ noncoding and structural region of the hepatitis C virus genome from patients with non-A, non-B hepatitis responding differently to interferon treatment. J Hepatol 20:623-629.
    • (1994) J Hepatol , vol.20 , pp. 623-629
    • Nakazawa, T.1    Kato, N.2    Ohkoshi, S.3    Shibuya, A.4    Shimotohno, K.5
  • 28
    • 0035834686 scopus 로고    scopus 로고
    • Mutational analysis of the different bulge regions of hepatitis C virus domain II and their influence on internal ribosome entry site translational ability
    • Odreman-Macchioli F, Baralle FE, Buratti E. 2001. Mutational analysis of the different bulge regions of hepatitis C virus domain II and their influence on internal ribosome entry site translational ability. J Biol Chem 276:41648-41655.
    • (2001) J Biol Chem , vol.276 , pp. 41648-41655
    • Odreman-Macchioli, F.1    Baralle, F.E.2    Buratti, E.3
  • 30
    • 0027055062 scopus 로고
    • Full-length nucleotide sequence of a Japanese hepatitis C virus isolate (HC-J1) with high homology to USA isolates
    • Okamoto H, Kanai N, Mishiro S. 1992. Full-length nucleotide sequence of a Japanese hepatitis C virus isolate (HC-J1) with high homology to USA isolates. Nucleic Acids Res 20:6410.
    • (1992) Nucleic Acids Res , vol.20 , pp. 6410
    • Okamoto, H.1    Kanai, N.2    Mishiro, S.3
  • 31
    • 0027385067 scopus 로고
    • Characterization of the genomic sequence of type V (or 3a) hepatitis C virus isolates and PCR primers for specific detection
    • Okamoto H, Tokita H, Sakamoto M, Horikita M, Kojima M, Iizuka H, Mishiro S. 1993. Characterization of the genomic sequence of type V (or 3a) hepatitis C virus isolates and PCR primers for specific detection. J Gen Virol 74:2385-2390.
    • (1993) J Gen Virol , vol.74 , pp. 2385-2390
    • Okamoto, H.1    Tokita, H.2    Sakamoto, M.3    Horikita, M.4    Kojima, M.5    Iizuka, H.6    Mishiro, S.7
  • 32
    • 0031816643 scopus 로고    scopus 로고
    • Genetic heterogeneity and properties of hepatitis C virus
    • Pawlotsky JM. 1998. Genetic heterogeneity and properties of hepatitis C virus. Acta Gastroenterol Belg 61:189-191.
    • (1998) Acta Gastroenterol Belg , vol.61 , pp. 189-191
    • Pawlotsky, J.M.1
  • 33
    • 0031905698 scopus 로고    scopus 로고
    • A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs
    • Pestova TV, Shatsky IN, Fletcher SP, Jackson RJ, Hellen CU. 1998. A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs. Genes Dev 12: 67-83.
    • (1998) Genes Dev , vol.12 , pp. 67-83
    • Pestova, T.V.1    Shatsky, I.N.2    Fletcher, S.P.3    Jackson, R.J.4    Hellen, C.U.5
  • 34
    • 0029902840 scopus 로고    scopus 로고
    • Internal initiation of translation of hepatitis C virus RNA: The ribosome entry site is at the authentic initiation codon
    • Reynolds JE, Kaminski A, Carroll AR, Clarke BE, Rowlands DJ, Jackson RJ. 1996. Internal initiation of translation of hepatitis C virus RNA: The ribosome entry site is at the authentic initiation codon. RNA 2:867-878.
    • (1996) RNA , vol.2 , pp. 867-878
    • Reynolds, J.E.1    Kaminski, A.2    Carroll, A.R.3    Clarke, B.E.4    Rowlands, D.J.5    Jackson, R.J.6
  • 37
    • 0029027606 scopus 로고
    • Variation of the hepatitis C virus 5′ non-coding region: Implications for secondary structure, virus detection and typing
    • Smith DB, Mellor J, Jarvis LM, Davidson F, Kolberg J, Urdea M, Yap PL, Simmonds P, The International HCV Collaborative Study Group. 1995. Variation of the hepatitis C virus 5′ non-coding region: Implications for secondary structure, virus detection and typing. J Gen Virol 76:1749-1761.
    • (1995) J Gen Virol , vol.76 , pp. 1749-1761
    • Smith, D.B.1    Mellor, J.2    Jarvis, L.M.3    Davidson, F.4    Kolberg, J.5    Urdea, M.6    Yap, P.L.7    Simmonds, P.8
  • 38
    • 0036305811 scopus 로고    scopus 로고
    • Quasispecies heterogeneity and constraints on the evolution of the 5′ noncoding region of hepatitis C virus (HCV): Relationship with HCV resistance to interferon-alpha therapy
    • Soler M, Pellerin M, Malnou CE, Dhumeaux D, Kean KM, Pawlotsky JM. 2002. Quasispecies heterogeneity and constraints on the evolution of the 5′ noncoding region of hepatitis C virus (HCV): Relationship with HCV resistance to interferon-alpha therapy. Virology 298:160-173.
    • (2002) Virology , vol.298 , pp. 160-173
    • Soler, M.1    Pellerin, M.2    Malnou, C.E.3    Dhumeaux, D.4    Kean, K.M.5    Pawlotsky, J.M.6
  • 40
    • 0026513651 scopus 로고
    • Internal ribosome entry site within hepatitis C virus RNA
    • Tsukiyama-Kohara K, Iizuka N, Kohara M, Nomoto A. 1992. Internal ribosome entry site within hepatitis C virus RNA. J Virol 66:1476-1483.
    • (1992) J Virol , vol.66 , pp. 1476-1483
    • Tsukiyama-Kohara, K.1    Iizuka, N.2    Kohara, M.3    Nomoto, A.4
  • 42
    • 0027153210 scopus 로고
    • Translation of human hepatitis C virus RNA in cultured cells is mediated by an internal ribosome-binding mechanism
    • Wang C, Sarnow P, Siddiqui A. 1993. Translation of human hepatitis C virus RNA in cultured cells is mediated by an internal ribosome-binding mechanism. J Virol 67:3338-3344.
    • (1993) J Virol , vol.67 , pp. 3338-3344
    • Wang, C.1    Sarnow, P.2    Siddiqui, A.3
  • 43
    • 0028151477 scopus 로고
    • A conserved helical element is essential for internal initiation of translation of hepatitis C virus RNA
    • Wang C, Sarnow P, Siddiqui A. 1994. A conserved helical element is essential for internal initiation of translation of hepatitis C virus RNA. J Virol 68:7301-7307.
    • (1994) J Virol , vol.68 , pp. 7301-7307
    • Wang, C.1    Sarnow, P.2    Siddiqui, A.3
  • 44
    • 0030663221 scopus 로고    scopus 로고
    • Nucleotide sequence variations in the internal ribosome entry site of hepatitis C virus-1b: No association with efficacy of interferon therapy or serum HCV-RNA levels
    • Yamamoto C, Enomoto N, Kurosaki M, Yu SH, Tazawa J, Izumi N, Marumo F, Sato C. 1997. Nucleotide sequence variations in the internal ribosome entry site of hepatitis C virus-1b: No association with efficacy of interferon therapy or serum HCV-RNA levels. Hepatology 26:1616-1620.
    • (1997) Hepatology , vol.26 , pp. 1616-1620
    • Yamamoto, C.1    Enomoto, N.2    Kurosaki, M.3    Yu, S.H.4    Tazawa, J.5    Izumi, N.6    Marumo, F.7    Sato, C.8
  • 45
    • 0029058615 scopus 로고
    • Cellular proteins specifically bind to the 5′-noncoding region of hepatitis C virus RNA
    • Yen JH, Chang SC, Hu CR, Chu SC, Lin SS, Hsieh YS, Chang MF. 1995. Cellular proteins specifically bind to the 5′-noncoding region of hepatitis C virus RNA. Virology 208:723-732.
    • (1995) Virology , vol.208 , pp. 723-732
    • Yen, J.H.1    Chang, S.C.2    Hu, C.R.3    Chu, S.C.4    Lin, S.S.5    Hsieh, Y.S.6    Chang, M.F.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.