Molecular phylogeny of Lysimachia (Myrsinaceae) based on chloroplast trnL-F and nuclear ribosomal ITS sequences

Molecular Phylogenetics and Evolution

Volumn 31, Issue 1, 2004, Pages 323-339

  Hao, Gang ^a   Yuan, Yong Ming ^b   Hu, Chi Ming ^a   Ge, Xue Jun ^a   Zhao, Nan Xian ^a  

^a SOUTH CHINA INSTITUTE OF BOTANY   (China)

^b UNIVERSITY OF NEUCHÂTEL   (Switzerland)

Author keywords

Anagallis; Asterolinon; Glaux; ITS; Lysimachia; Myrsinaceae; Primulaceae; Trientalis; trnL F

Indexed keywords

ANAGALLIS; ASTEROLINON; EPHEMERUM; GLAUX; HAWAIIA; LYSIMACHIA; LYSIMACHIA EPHEMERUM; MYRSINACEAE; PRIMULACEAE; TRIENTALIS;

EID: 1642505817     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1055-7903(03)00286-0     Document Type: Article

References (42)

1. Anderberg, A.A., Ståhl, B., 1995. Phylogenetic interrelationships in the order Primulales, with special emphasis on the family circumscriptions. Can. J. Bot. 73, 1699-1730.
2. Anderberg, A.A., Ståhl, B., Källersjö, M., 1998. Phylogenetic relationships in the Primulales inferred from rbcL sequence data. Pl. Syst. Evol. 211, 93-102.
3. Anderberg, A.A., Rydin, C., Källersjö, M., 2002. Phylogenetic relationships in the order Ericales s.l.: analyses of molecular data from five genes from the plastid and mitochondrial genomes. Am. J. Bot. 89, 677-687.
4. Bennell, A.P., Hu, C.M., 1983. The pollen morphology and taxonomy of Lysimachia. Not. Roy. Bot. Gard. Edinb. 40, 425-458.
5. Britton, N.L., Brown, A., 1897. An Illustrated Flora of the United States, Canada, and the British Possessions, vol. II. Charles Scribner's Sons, New York, NY.
6. Chassot, P., Nemomissa, S., Yuan, Y.-M., Küpfer, P., 2001. High paraphyly of Swertia L. (Gentianaceae) in the Gentianella-lineage as revealed by nuclear and chloroplast DNA sequence variation. Pl. Syst. Evol. 229, 1-21.
7. Chen, F.H., Hu, C.M., 1979. Taxonomic and phytogeographic studies on Chinese species of Lysimachia. Acta Phytotax. Sin. 17, 21-53.
8. Coffey, V.J., Jones, S.B., 1980. Biosystematics of Lysimachia section Seleucia (Primulaceae). Brittonia 32, 309-322.
9. Cronquist, A., 1981. An Integrated System of Classification of Flowering Plant. Columbia University Press, New York, NY.
10. Donoghue, M.J., Bell, C.D., Li, J., 2001. Phylogenetic patterns in northern hemisphere plant geography. Int. J. Plant Sci. 162, S41-S52.
11. Douglas, G.E., 1936. Studies in the vascular anatomy of the Primulaceae. Am. J. Bot. 23, 199-211.
12. Doyle, J.J., Doyle, J.L., 1987. A rapid DNA isolation method for small quantities of fresh tissues. Phytochem. Bull. 19, 11-15.
13. Farris, J.S., Källersjö, M., Kluge, A.G., Bult, C., 1994. Testing significance of incongruence. Cladistics 10, 315-319.
14. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
15. Friis, E.M., 1985. Angiosperm fruits and seeds from the Middle Miocene of Jutland (Denmark). Det Kongelige Danske Videnskaberne Selskab Biologiske Skrifter 24 (3), 1-163.
16. Gleason, H.A., 1952. The New Britton and Brown Illustrated Flora of the Northeastern United States and Canada, vol. 3. Lancaster Press, Pennsylvania, USA.
17. Gray, A., 1848. Manual of the Botany of the Northern United States. James Munroe, Boston and Cambridge, USA.
18. Handel-Mazzetti, H., 1928. A revision of the Chinese species of Lysimachia. Not. Roy. Bot. Gard. Edinb. 77, 51-122.
19. Hao, G., Hu, C.M., 2001. Phylogenetic relationships in Lysimachia (Primulaceae): a cladistic analysis. J. Trop. Subtrop. Bot. 9, 93-100.
20. Hu, C.M., 1994. On the geographical distribution of the Primulaceae. J. Trop. Subtrop. Bot. 2, 1-14.
21. Hu, C.M., Kelso, S., 1996. Primulaceae. In: Wu, Z.-Y., Raven P.H., (Eds.), Flora of China, vol. 15. Science Press, Beijing, China and Missouri Botanical Garden, St. Louis, pp. 39-189.
22. Huelsenbeck, J.P., Ronquist, F., 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17, 754-755.
23. Huelsenbeck, J.P., Ronquest, F., Nielsen, R., Bollback, J.P., 2001. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294, 2310-2314.
24. Källersjö, M., Bergqvist, G., Anderberg, A.A., 2000. Generic realignment in primuloid families of the Ericales s.l.: a phylogenetic analysis based on DNA sequences from three chloroplast genes and morphology. Am. J. Bot. 87, 1325-1341.
25. Maddison, W.P., Maddison, D.R., 1992. MacClade: Analysis of Phylogeny and Character Evolution, Version 3.0. Sinauer, Sunderland, MA.
26. Marr, K.L., Bohm, B.A., 1997. A taxonomic revision of the endemic Hawaiian Lysimachia (Primulaceae) including three new species. Pac. Sci. 51, 254-287.
27. Marr, K.L., Bohm, B.A., 1999. Allozyme variation in endemic Hawaiian Lysimachia (Primulaceae). Syst. Bot. 24, 545-557.
28. Martins, L., Oberprieler, C., Hellwig, F.H., 2003. A phylogenetic analysis of Primulaceae s. l. based on internal transcribed spacer (ITS) DNA sequence data. Pl. Syst. Evol. 237, 75-85.
29. Mast, A., Kelso, S., Richard, A.J., Lang, D.J., Feller, D.M.S., Conti, E., 2001. Phylogenetic relationships in Primula L. and related genera (Primulaceae) based on noncoding chloroplast DNA. Intern. J. Pl. Sci. 162, 1381-1400.
30. Nowicke, J.W., Skvarla, J.H., 1977. Pollen morphology and the relationship of the Plumbaginaceae, Polygonaceae and the Primulaceae. Smith. Contr. Bot. 37, 1-64.
31. Posada, D., Crandall, K.A., 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
32. Ray, J.D., 1956. The Genus Lysimachia in the New World. Illinois Biological Monographs, 24 (3-4). The University of Illinois Press, Urbana, IL. pp. 1-160.
33. Ronquist, F., 1996. DIVA, version 1.1. Computer Program and Manual Available by Anonymous FTP from Uppsala University (ftp.uu.se or ftp.systbot.uu.se).
34. Ronquist, F., 1997. Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography. Syst. Biol. 46, 195-203.
35. Small, J.K., 1933. Manual of the Southeastern Flora. University of North Carolina Press, Chapel Hill, NC.
36. Swofford, D.L., 2000. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, MA.
37. Taberlet, P., Gielly, L., Pautou, G., Bouvet, J., 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Pl. Mol. Biol. 17, 1105-1109.
38. Takhtajan, A.L., 1997. Diversity and Classification of Flowering Plants. Columbia University Press, New York, NY.
39. Templeton, A.R., 1983. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37, 221-244.
40. Thomson, J.D., Gibson, T.J., Plewniak, F., 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res. 25, 4876-4882.
41. Wagner, W.L., Herbst, D.R., Sohmer, S.H., 1990. Manual of the Flowering Plants of Hawaii. University of Hawaii Press, Bishop Museum Press, Honolulu, HI.
42. White, T.J., Bruns, T., Lee, S., Taylor, J., 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M., Gelfand, D., Sninsky, J., White, T. (Eds.), PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, CA, pp. 315-322.