Essential eukaryotic core

Evolution

Volumn 58, Issue 2, 2004, Pages 441-446

  Strobel, George L ^a   Arnold, Jonathan ^b  

^a UNIVERSITY OF GEORGIA   (United States)

^b NONE   (United States)

Author keywords

Comparative genomics; Essential eukaryotic core; Pneumocystis carinii

Indexed keywords

FUNGUS; GENOME;

BACTERIA (MICROORGANISMS); EUKARYOTA; FUNGI; MYCOPLASMA; MYCOPLASMA GENITALIUM; PNEUMOCYSTIS CARINII; PROKARYOTA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE;

EID: 1642383842     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0014-3820.2004.tb01660.x     Document Type: Article

References (24)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. Arnold, J., and N. Hilton. 2003. Revelations from a bread mould. Nature 422:821-822.
3. Beard, C. B., J. L. Carter, S. P. Keely, L. Huang, and N. J. Pieniazek, I. N. S. Maura, J. M. Roberts, A. W. Hightower, M. S. Bens, A. R. Freeman, S. Lee, J. R. Stringer, J. S. Duchin, C. del Rio, D. Rimland, R. P. Baughman, D. A. Levy, V. J. Dietz, P. Simon, and T. R. Navin. 2000. Genetic variation in Pneumocystis carinii isolates from different geographic regions: implications for transmission. Emerging Infectious Diseases 6:265-271.
4. Bennett, J. W., and J. Arnold. 2001. Genomics for fungi. Pp. 267-297 in R. J. Howard and N. A. R. Gow, eds. The Mycota VII. Biology of the fungal cell. Springer-Verlag, New York.
5. Cushion, M. T. 1998. Pneumocystis carinii. Pp. 645-683 in L. Collier, A. Balows, M. Susman, eds. Topley & Wilson's Microbiology and Microbial Infection. Vol. 4. Medical Mycology. 9th ed. Edward Arnold Publishers, London.
6. Cushion, M. T., M. Kaselis, S. L. Stringer, and J. R. Stringer. 1993. Genetic stability and diversity of Pneumocystis carinii infecting rate colonies. Infect. Immun. 61:4801-4813.
7. Draper, N. R., and H. Smith. 1980. Applied Regression Analysis. 2nd ed. John Wiley and Sons, New York.
8. Edman, J. C., J. A. Kovacs, H. Masur, D. V. Santi, H. J. Elwood, and M. L. Sogin. 1988. Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the fungi. Nature 334: 519-522.
9. Ewing, B., L. Hillier, M. C. Wendl, and P. Green. 1998. Base-calling of automated sequencer traces using Phred I. Error assessment. Genome Res. 8:175-185.
10. Ewing, B., and P. Green. 1998. Base-calling of automated sequencer traces using Phred II. Error probabilities. Genome Res. 8: 186-194.
11. Galagan, J. E., S. E. Calvo, K. A. Borkovich, E. U. Selker, N. D. Read, D. Jaffe, W. FitzHugh, L-J Ma, S. Smirnov, S. Purcell, B. Rehman, T. Elkins, R. Engels, S. Wang, C. B. Nielsen, J. Butler, M. Endrizzi, D. Qui, P. Ianaklev, D. Bell-Pedersen, M. A. Nelson, M. Warner-Washburne, C. P. Selitrennikoff, J. A. Kinsey, E. L. Braun, A. Zelter, U. Schulte, G. O. Kothe, G. Jedd, W. Mewes, C. Staben, E. Marcotte, D. Greenberg, A. Roy, K. Foley, J. Naylor, N. Stange-Thomann, R. Barrett, S. Gnerre, M. Kamal, M. Kamvyssells, E. Mauceli, C. Blelke, S. Rudd, D. Frishman, S. Krystofova, C. Rasmussen, R. L. Metzenberg, D. D. Perkins, S. Kroken, C. Cogoni, G. Macino, D. Catcheside, W. Li, R. J. Pratt, S. A. Osmani, C. P. C. DeSouza, L. Glass, M. J. Orbach, J. A. Berglund, R. Voelker, O. Yarden, M. Plamann, S. Seller, J. Dunlap, A. Radford, R. Aramayo, D. O. Natvig, L. A. Alex, G. Mannhaupt, D. J. Ebbole, M. Freitag, I. Paulsen, M. S. Sachs, E. S. Lander, C. Nusbaum, and B. Birren. 2003. The genome sequence of the filamentous fungus Neurospora crassa. Nature 422:859-868.
12. Georgopapadakou, N. H., and T. J. Walsh. 1994. Human mycoses: drugs and targets for emerging pathogens. Science 264:371-373.
13. Goffeau, A., B. G. Barrell, H. Bussey, R. W. Davis, B. Dujon, H. Feldmann, F. Galibert, J. D. Hoheisel, C. Jacq, M. Johnston, E. J. Louis, H. W. Mews, Y. Murakami, P. Philippsen, H. Tettelin, and S. G. Oliver. 1996. Life with 6000 genes. Science 274: 546-567.
14. Gustin, M. C., J. Albertyn, M. Alexander, and K. Davenport. 1998. MAP Kinase pathways in the yeast Saccharomyces cerevisiae, Microbiol. Mol. Biol. Rev. 62:1264-1300.
15. Hall, D. A., J. A. Miller, J. Arnold, K. J. Kochut, and A. P. Sheth, and M. J. Weise. 2003. Using workflow to build an information management system for a geographically distributed genome sequencing initiative. Pp. 359-371 in R. A. Prade and H. J. Bohnert, eds. Genomics of plants and fungi. Marcel Dekker, New York.
16. Hutchison III, C. A., S. N. Peterson, S. R. Gill, R. T. Cline, O. White, C. M. Fraser, H. O. Smith, and J. C. Venter. 1999. Global transposon mutagenesis and a minimal Mycoplasma genome. Science 286:2165-2169.
17. Kaneshiro, S., M. S. Collins, M. S., and M. T. Cushion. 2000. Inhibitors of sterol biosynthesis and Amphotericin B reduce the viability of Pneumocystis carinii f. sp. carinii. Antimicrob. Agents Chemother. 44:1630-1638.
18. Kochut, K. J., J. Arnold, A. Sheth, J. A. Miller, E. Kraemer, I. B. Arpinar, and J. Cardoso. 2003. IntelliGEN: a distributed workflow system for discovering protein-protein interactions. Parallel and Distributed Databases 13:43-72.
19. Prade, R. A., P. Ayoubi, S. Krishman, S. Macwana, and H. Russell. 2001. Accumulation of stress and inducer-dependent plant-cell-wall-degrading enzymes during asexual development in Aspergillus nidulans. Genetics 157:957-967.
20. Roe, B. A., J. S. Crabtree, and A. S. Khan. (1996). DNA isolation and sequencing. John Wiley and Sons, New York.
21. Smulian, A. G., T. Sesterhenn, R. Tanaka, and M. T. Cushion. 2001. The ste3 pheromone receptor gene of Pneumocystis carinii is surrounded by a cluster of signal transduction genes. Genetics 157:991-1002.
22. Stringer, J. R. 1996. Pneumocystis carinii: what is it, exactly? Clin. Microbiol. 9:489-498.
23. Winzeler, E. A., D. D. Shoemaker, A. Astromoff, H. Liang, and K. Anderson, B. Andre, R. Bangham, R. Benito, J. D. Boeke, H. Bussey, A. M. Chu, C. Connelly, K. Davis, F. Dietrich, S. W. Dow, M. E. Bakkoury, F. Foury, S. H. Friend, E. Gentalen, G. Glaever, J. H. Hegemann, T. Jones, M. Laub, H. Liao, N. Liebundguth, D. J. Lockhart, A. Lucau-Danila, M. Lussier, N. M'Rabet, P. Menard, M. Mittmann, C. Pai, C. Rebischung, J. L. Revuelta, L. Riles, C. J. Roberts, P. Ross-MacDonald, B. Scherens, M. Snyder, S. Sookhai,-Mahadeo, R. K. Storms, S. Veronneau, M. Voet, G. Volckaert, T. R. Ward, R. Wysocki, G. S. Yen, K. Yu, K. Zimmermann, P. Hpilippsen, M. Johnston, and R. W. Davis. 1999. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285:901-906.
24. Xu, Z., B. Lance, C. Vargas, B. Arpinar, S. Bhandarkar, E. Kraemer, K. J. Kochut, J. A. Miller, J. R. Wagner, M. J. Weise, J. K. Wunderlich, J. R. Stringer, A. G. Smulian, M. T. Cushion, and J. Arnold. 2003. Mapping by sequencing the Pneumocystis genome using the ordering DNA sequences V3 tool. Genetics 163: 1299-1313.