GeneBox: Interactive Visualization of Microarray Data Sets

Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences

Volumn , Issue , 2003, Pages 10-16

  Shah, Nameeta ^a,b   Filkov, Vladimir ^b   Hamann, Bernd ^a,b   Joy, Kenneth I ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b University of California   (United States)

Author keywords

Data analysis; Functional genomics data ; Information visualization; Interactive data exploration; Visualization

Indexed keywords

ARRAYS; COMPUTATIONAL COMPLEXITY; DATA MINING; DATA REDUCTION; GENETIC ENGINEERING; STATISTICAL METHODS;

FUNCTIONAL GENOMICS DATA; INFORMATION VISUALIZATION; INTERACTIVE DATA EXPLORATION;

GENES;

EID: 1642346231     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (10)

1. R J Cho, M Campbell, E Winzeler, L Steinmetz, A Conway, L Wodicka, T Wolfsberg, A Gabrielian, D Landsman, D Lockhart, and R Davis. A genome-wide transcriptional analysis of the mitotic cell cycle. Molecular Cell, 2:65-73, 1998.
2. S Chu, J DeRisi, M Eisen, J Mulholland, D Botstein, P O Brown, and I Herskowitz. The transcriptional program of sporulation in budding yeast. Science, 282:699-705, 1998.
3. V Filkov, S Skiena, and J Zhu. Analysis tecnhiques for microarray time-series data. Journal of Computational Biology, 9:317-330, 2002.
4. J Gollub, C A Ball, G Binkley, J Demeter, D B Finkelstein, J M Hebert, T Hernandez-Boussard, H Jin, M Kaloper, J C Matese, M Schroeder, P O Brown, D Botstein, and G Sherlock. The stanford microarray database: data access and quality assessment tools. Nucleic Acids Research, 31(1):94-96, January 2003.
5. W Huber, A von Heydebreck, H. Sltmann, A Poustka, and M Vingron. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics, 18(90001):96S-104S, 2002.
6. N Ogawa, J DeRisi, and P O Brown. System for phosphate accumulation and polyphosphate metabolism in saccharomyces cerevisiae revealed by genomic expression analysis. Molecular Biology of the Cell, 11(12):4309-4321, December 2000.
7. M J Pastizzo, R F Erbacher,, and L B Feldman. Multi-dimensional data visualization. Behavior Research Methods, Instruments, and Computers, 34(2): 158-162, 2002.
8. Terry Speed, editor. Statistical Analysis of Gene Expression Microarray Data. Chapman and Hall/CRC, 2003.
9. P T Spellman, G Sherlock, M Q Zhang, V R Iyer, K Anders, M B Eisen, P O Brown, D Botstein, and B Futcher. Comprehensive identification of cell cycle-regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization. Molecular Biology of the Cell, 9(12):3273-3297, December 1998.
10. A Sturn, J Quackenbush, and Z Trajanoski. Genesis: cluster analysis of microarray data. Bioinformatics, 18(1):207-208, January 2002.