Complex II from a structural perspective

Current Protein and Peptide Science

Volumn 5, Issue 2, 2004, Pages 107-118

  Horsefield, Rob ^a   Iwata, So ^a   Byrne, Bernadette ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

Aerobic respiratory chain; Complex II; Fcc3; Flavocytochrome c3; Fumarate reductase; L aspartate oxidase; Laspo; Membrane protein; Oxidative phosphorylation; QFR; Quinol:fumarate reductase; Reactive oxygen species; Respiration; SQR; Succinate dehydrogenase; Succinate:quinone oxidoreductase; Superoxide

Indexed keywords

1,4 BENZOQUINONE; AMINO ACID; FLAVOPROTEIN; FUMARIC ACID; SUCCINATE DEHYDROGENASE (UBIQUINONE); SUCCINIC ACID;

AEROBIC METABOLISM; AMINO ACID SEQUENCE; CELL MEMBRANE; CITRIC ACID CYCLE; COMPLEX FORMATION; CYTOPLASM; ELECTRON TRANSPORT; ENZYME ACTIVITY; ENZYME MECHANISM; ENZYME STRUCTURE; ESCHERICHIA COLI; EXTRACELLULAR MATRIX; IN VITRO STUDY; IN VIVO STUDY; MACROMOLECULE; MITOCHONDRIAL RESPIRATION; NONHUMAN; OXIDATION; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; RESPIRATORY CHAIN; REVIEW; SEQUENCE HOMOLOGY; STRUCTURE ACTIVITY RELATION; STRUCTURE ANALYSIS;

AMINO ACID OXIDOREDUCTASES; AMINO ACID SEQUENCE; ANIMALS; BACTERIAL PROTEINS; CATALYSIS; CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; CYTOCHROME C GROUP; ELECTRON TRANSPORT COMPLEX II; ESCHERICHIA COLI PROTEINS; FLAVOPROTEINS; HUMANS; MEMBRANE PROTEINS; MODELS, BIOLOGICAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; OXIDOREDUCTASES; PROTEIN STRUCTURE, QUATERNARY; PROTEIN SUBUNITS; REACTIVE OXYGEN SPECIES; SEQUENCE HOMOLOGY, AMINO ACID; SUCCINATE DEHYDROGENASE;

ESCHERICHIA COLI;

EID: 1642343930     PISSN: 13892037     EISSN: None     Source Type: Journal    
DOI: 10.2174/1389203043486847     Document Type: Review

References (82)

1. Schultz, B. E. and Chan, S. I. (2001) Annu. Rev. Biophys. Biomol. Struct. 30, 23-65.
2. Mitchell, P. (1979) Science 206, 1148-1159.
3. Abramson, J., Svensson-Ek, M., Byrne, B., and Iwata, S. (2001) Biochim. Biophys. Acta 1544, 1-9.
4. Cecchini, G., Schröder, I., Gunsalus, R. P., and Maklashina, E. (2002) Biochim. Biophys. Acta 1553, 140-157.
5. Guest, J. R. (1981) J. Gen. Microbiol. 122, 171-179.
6. Maklashina, E., Berthold, D. A., and Cecchini, G. (1998) J. Bacteriol. 180, 5989-5996.
7. Tatusova, T. A. and Madden, T. L. (1999) FEMS Microbiol. Lett. 174, 247-250.
8. Hederstedt, L. (2002) Biochim. Biophys. Acta 1553, 74-83.
9. Ohnishi, T., Moser, C. C., Page, C. C., Dutton, P. L., and Yano, T. (2000) Structure 8, 23-32.
10. Hägerhäll, C. and Hederstedt, L. (1996) FEBS 389, 25-31.
11. Schirawski, J. and Unden, G. (1998) Eur. J. Biochem. 257, 210-215.
12. Lemos, R. S., Fernandes, A. S., Pereira, M. M., Gomes, C. M., and Teixeira, M. (2002) BBA 1553, 158-170.
13. Hägerhäll, C. (1997) Biochim. Biophys. Acta 1320, 107-141.
14. Cecchini, G., Maklashina, E., Yankovskaya, V., Iverson, T. M., and Iwata, S. (2003) FEBS 545, 31-38.
15. Nakamura, K., Yamaki, M., Sarada, M., Nakayama, S., Vibat, C. R., Gennis, R. B., Nakayashiki, T., Inokuchi, H., Kojima, S., and Kita, K. (1996) J. Biol. Chem. 271, 521-527.
16. Nihei, C., Nakayashiki, T., Nakamura, K., Inokuchi, H., Gennis, R. B., Kojima, S., and Kita, K. (2001) Mol. Genet. Genomics 265, 394-404.
17. Matsson, M., Tolstoy, D., Aasa, R., and Hederstedt, L. (2000) Biochemistry 39, 8617-8624.
18. Rustin, P. and Rötig, A. (2002) Biochim. Biophys. Acta 1553, 117-122.
19. Yankovskaya, V., Horsefield, R., Törnroth, S., Luna-Chavez, C., Miyoshi, H., Léger, C., Byrne, B., Cecchini, G., and Iwata, S. (2003) Science 299, 700-704.
20. Jordan, P., Fromme, P., Witt, H. T., Klukas, O., Saenger, W., and Krauss, N. (2001) Nature 411, 909-917.
21. Murakami, S., Nakashima, R., Yamashita, E., and Yamaguchi, A. (2002) Nature 419, 587-593.
22. Blaurock, A. E. and Stoeckenius, W. (1971) Nat. New Biol. 233, 152-155.
23. Jormakka, M., Törnroth, S., Byrne, B., and Iwata, S. (2002) Science 295, 1863-1868.
24. Page, C. C., Moser, C. C., Chen, X., and Dutton, P. L. (1999) Nature 402, 47-52.
25. Lancaster, C. R., Kröger, A., Auer, M., and Michel, H. (1999) Nature 402, 377-385.
26. Iverson, T. M., Luna-Chavez, C., Cecchini, G., and Rees, D. C. (1999) Science 284, 1961-1966.
27. Bossi, R. T., Negri, A., Tedeschi, G., and Mattevi, A. (2002) Biochemistry 41, 3018-3024.
28. Mattevi, A., Tedeschi, G., Bacchella, L., Coda, A., Negri, A., and Ronchi, S. (1999) Structure 7, 745-756.
29. Bamford, V., Dobbin, P. S., Richardson, D. J., and Hemmings, A. M. (1999) Nat. Struct. Biol. 6, 1104-1107.
30. Taylor, P., Pealing, S. L., Reid, G. A., Chapman, S. K., and Walkinshaw, M. D. (1999) Nat. Struct. Biol. 6, 1108-1112.
31. Reid, G. A., Gordon, E. H., Hill, A. E., Doherty, M., Turner, K., Holt, R., and Chapman, S. K. (1998) Biochem. Soc. Trans. 26, 418-421.
32. Doherty, M. K., Pealing, S. L., Miles, C. S., Moysey, R., Taylor, P., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2000) Biochemistry 39, 10695-10701.
33. Leys, D., Tsapin, A. S., Nealson, K. H., Meyer, T. E., Cusanovich, M. A., and Van Beeumen, J. J. (1999) Nat. Struct. Biol. 6, 1113-1117.
34. Hederstedt, L. (1999) Science 284, 1941-1942.
35. Iverson, T. M., Luna-Chavez, C., Schroder, I., Cecchini, G., and Rees, D. C. (2000) Curr. Opin. Struct. Biol. 10, 448-455.
36. Lancaster, C. R., Gorss, R., Haas, A., Ritter, M., Mantele, W., Simon, J., and Kroger, A. (2000) Proc. Natl. Acad. Sci. USA 97, 13051-13056.
37. Blaut, M., Whittaker, K., Valdovinos, A., Ackrell, B. A., Gunsalus, R. P., and Cecchini, G. (1989) J. Biol. Chem. 264, 13599-13604.
38. Dobbin, P. S., Butt, J. N., Powell, A. K., Reid, G. A., and Richardson, D. J. (1999) Biochem. J. 342 (Pt 2), 439-448.
39. Ackrell, B. A., Kearney, E. B., and Mayr, M. (1974) J. Biol. Chem. 249, 2021-2027.
40. Ackrell, B. A., Cochran, B., and Cecchini, G. (1989) Arch. Biochem. Biophys. 268, 26-34.
41. Alston, T. A., Mela, L., and Bright, H. J. (1977) Proc. Natl. Acad. Sci. USA 74, 3767-3771.
42. Morris, M. P., Pagan, C., and Warmke, H. E. (1954) Science 119, 322-323.
43. Schröder, I., Gunsalus, R. P., Ackrell, B. A., Cochran, B., and Cecchini, G. (1991) J. Biol. Chem. 266, 13572-13579.
44. Vinogradov, A. D. (1986) Biokhimiya 51, 1944-1973.
45. Mowat, C. G., Moysey, R., Miles, C. S., Leys, D., Doherty, M. K., Taylor, P., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2001) Biochemistry 40, 12292-12299.
46. Mowat, C. G., Pankhurst, K. L., Miles, C. S., Leys, D., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2002) Biochemistry 41, 11990-11996.
47. Tedeschi, G., Ronchi, S., Simonic, T., Treu, C., Mattevi, A., and Negri, A. (2001) Biochemistry 40, 4738-4744.
48. Birch-Machin, M. A., Taylor, R. W., Cochran, B., Ackrell, B. A., and Turnbull, D. M. (2000) Ann. Neurol. 48, 330-335.
49. Lancaster, C. R., Gross, R., and Simon, J. (2001) Eur. J. Biochem. 268, 1820-1827.
50. Mattevi, A., Vanoni, M. A., and Curti, B. (1997) Curr. Opin. Struct. Biol. 7, 804-810.
51. Jones, T., Zou, J., Cowan, S. W., and Kjeldgaard, G. (1991) Acta cryst. A 47, 110-119.
52. Bertero, M. G., Rothery, R. A., Palak, M., Hou, C., Lim, D., Blasco, F., Weiner, J. H., and Strynadka, N. C. (2003) Nat. Struct. Biol. 10, 681-687.
53. Jormakka, M., Richardson, D., Byrne, B., and Iwata, S. (2004) Structure 12, 95-104.
54. Flemming, D., Schlitt, A., Spehr, V., Bischof, T., and Friedrich, T. (2003) J. Biol. Chem. 278, 47602-47609.
55. Darlison, M. G. and Guest, J. R. (1984) Biochem. J. 223, 507-517.
56. Sham, S., Calzolai, L., Wang, P. L., Bren, K., Haarklau, H., Brereton, P. S., Adams, M. W., and La Mar, G. N. (2002) Biochemistry 41, 12498-12508.
57. Iwata, S., Saynovits, M., Link, T. A., and Michel, H. (1996) Structure 4, 567-579.
58. Xia, D., Yu, C. A., Kim, H., Xia, J. Z., Kachurin, A. M., Zhang, L, Yu, L., and Deisenhofer, J. (1997) Science 277, 60-66.
59. Zhang, Z., Huang, L., Shulmeister, V. M., Chi, Y. I., Kim, K. K., Hung, L. W., Crofts, A. R., Berry, E. A., and Kim, S. H. (1998) Nature 392, 677-684.
60. Werth, M. T., Sices, H., Cecchini, G., Schroder, I., Lasage, S., Gunsalus, R. P., and Johnson, M. K. (1992) FEBS 299, 1-4.
61. Yankovskaya, V., Sablin, S. O., Ramsay, R. R., Singer, T. P., Ackrell, B. A., Cecchini, G., and Miyoshi, H. (1996) J. Biol. Chem. 271, 21020-21024.
62. Yang, X., Yu, L., Ile, D., and Yu, C. (1998) J. Biol. Chem. 273, 31916-31923.
63. Fisher, N. and Rich, P. R. (2000) J. Mol. Biol. 296, 1153-1162.
64. Baysal, B. E., Ferrell, R. E., Willett-Brozick, J. E., Lawrence, E. C., Myssiorek, D., Bosch, A., van der, M. A., Taschner, P. E., Rubinstein, W. S., Myers, E. N., Richard, C. W., III, Cornelisse, C. J., Devilee, P., and Devlin, B. (2000) Science 287, 848-851.
65. Baysal, B. E., Rubinstein, W. S., and Taschner, P. E. (2001) J. Mol. Med. 79, 495-503.
66. Ishii, N., Fujii, M., Hartman, P. S., Tsuda, M., Yasuda, K., Senoo-Matsuda, N., Yanase, S., Ayusawa, D., and Suzuki, K. (1998) Nature 394, 694-697.
67. Senoo-Matsuda, N., Yasuda, K., Tsuda, M., Ohkubo, T., Yoshimura, S., Nakazawa, H., Hartman, P. S., and Ishii, N. (2001) J. Biol. Chem. 276, 41553-41558.
68. Vibat, C. R., Cecchini, G., Nakamura, K., Kita, K., and Gennis, R. B. (1998) Biochemistry, 37, 4148-4159.
69. Maklashina, E., Rothery, R. A., Weiner, J. H., and Cecchini, G. (2001) J. Biol. Chem. 270, 18968-18976.
70. Fridén, H., Cheesman, M. R., Hederstedt, L., Andersson, K. K., and Thomson, A. J. (1990) Biochim. Biophys. Acta 1041, 207-215.
71. Paradies, G., Petrosillo, G., Pistolese, M., and Ruggiero, F. M. (2002) Gene 280, 135-141.
72. Robinson, N. C. (1993) J. Bioenerg. Biomembr. 25, 153-163.
73. Lange, C., Nett, J. H., Trumpower, B. L., and Hunte, C. (2001) EMBO J. 20, 6591-6600.
74. Messner, K. R. and Imlay, J. A. (2002) J. Biol. Chem. 277, 42563-42571.
75. Leger, C., Heffron, K., Pershad, H. R., Maklashina, E., Luna-Chavez, C., Cecchini, G., Ackrell, B. A., and Armstrong, F. A. (2001) Biochemistry 40, 11234-11245.
76. Heering, H. A., Weiner, J. H., and Armstrong, F. A. (1997) J. Am. Chem. Soc. 119, 11628-11638.
77. Iverson, T. M., Luna-Chavez, C., Croal, L. R., Cecchini, G., and Rees, D. C. (2002) J. Biol. Chem. 277, 16124-16130.
78. Notredame, C., Higgins, D. G., and Heringa, J. (2000) J. Mol. Biol. 302, 205-217.
79. Nicholas, K. B., Nicholas, H. B., and Deerfield, D. W. (1997) EMBnet. News 4, 14.
80. Kraulis, J. (1991). J. App. Cryst. 24, 946-950.
81. Merrit, E. and Murphy, M. (1994). Acta Cryst. D, D50, 869-873.
82. DeLano, W. L. (2002) DeLano Scientific, San Carlos, CA, USA. (http://www.pymol.org).