Multiple testing for gene expression data: An investigation of null distributions with consequences for the permutation test

Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences

Volumn , Issue , 2003, Pages 3-9

  Pollard, Katherine S ^a   Van der Laan, Mark J ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Asymptotics; Bootstrap; Gene expression; Multiple testing; Permutation; Strong control

Indexed keywords

ASYMPTOTICS; BOOTSTRAP; GENE EXPRESSION; MULTIPLE TESTING; PERMUTATION; STRONG CONTROL;

DATA REDUCTION; ERROR ANALYSIS; MATHEMATICAL MODELS; PARAMETER ESTIMATION; REGRESSION ANALYSIS; STATISTICAL TESTS; STATISTICS;

GENES;

EID: 1642266602     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (7)

1. Y. Hochberg and A.C. Tamhane. Multiple Comparison Procedures. John Wiley & Sons, 1987.
2. P.H. Westfall and S.S. Young. Resampling-based Multiple Testing: Examples and methods for p-value adjustment. John Wiley & Sons, 1993.
3. Y. Benjamini and Y. Hochberg. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Royal Stistical Society, 57:289-300, 1995.
4. K.S. Pollard and M.J. van der Laan. Resampling-based multiple testing: asymptotic strong control of type i error and applications to gene expression data. Technical Report 121, Group in Biostatistics, University of California, 2002. Submitted.
5. S. Dudoit, J.P. Shaffer, and J.C. Boldrick. Multiple hypothesis testing in microarray experiments. Technical Report 110, Group in Biostatistics, University of California, 2002. Submitted.
6. P. Hall. The Bootstrap and Edgeworth Expansion. Springer-Verlag, 1992.
7. A.A. Alizadeh, M.B. Eisen, R.E. Davis, C. Ma, I.S. Lossos, A. Rosenwald, J.C. Boldrick, H. Sabet, T. Tran, X. Yu, J.I. Powell, L. Yang, G.E. Marti, T. Moore, T.Jr. Hudson, L. Lu, D.B. Lewis, R. Tibshirani, G. Sherlock, W.C. Chan, T.C. Greiner, D.D. Weisenberger, J.O. Armitage, R. Warnke, R. Levy, W. Wilson, M.R. Grever, J.C. Byrd, D. Botstein, P.O. Brown, and L.M. Staudt. Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling. Nature, 403:503-511, 2000.