Automated multi-view 3D image acquisition in human genome research

Proceedings - 1st International Symposium on 3D Data Processing Visualization and Transmission, 3DPVT 2002

Volumn , Issue , 2002, Pages 91-98

  Kozubek, M ^a   Matula, P ^a   Eipel, H ^b   Hausmann, M ^b  

^a MASARYK UNIVERSITY   (Czech Republic)

^b UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATION; DATA HANDLING; DATA VISUALIZATION; DIGITAL STORAGE; IMAGE PROCESSING; OPTICAL DATA PROCESSING; PROBLEM SOLVING; THREE DIMENSIONAL COMPUTER GRAPHICS; TOMOGRAPHY; VISUALIZATION;

3D IMAGE ACQUISITION; AXIAL RESOLUTIONS; CONFOCAL LASER SCANNING MICROSCOPY; HARDWARE COMPONENTS; LATERAL RESOLUTION; OPTICAL RESOLUTION; PROCESSING PROCEDURES; SUBCELLULAR COMPONENTS;

IMAGE ACQUISITION;

EID: 16244422211     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/TDPVT.2002.1024048     Document Type: Conference Paper

References (19)

1. J. Bradl, M. Hausmann, B. Schneider, B. Rinke, and C. Cremer, "A versatile 2π-tilting device for fluorescence microscopes", J. Microsc., vol. 176, pp. 211-221, 1994.
2. J. Bradl, B. Rinke, B. Schneider, M. Hausmann, C. Cremer, "Improved resolution in "practical" light microscopy by means of a glass fibre 2π-tilting device", Proc. SPIE, vol. 2628, pp. 140-146, 1996.
3. J. Bradl, B. Rinke, A. Esa, P. Edelmann, H. Krieger, B. Schneider, M. Hausmann, and C. Cremer, "Comparative study of three-dimensional localization accuracy in conventional, confocal laser scanning and axial tomographic fluorescence light microscopy", Proc. SPIE, vol. 2926, pp. 201-206, 1996.
4. J. Bradl, B. Rinke, B. Schneider, P. Edelmann, H. Krieger, M. Hausmann, and C. Cremer, "Resolution improvement in 3-D microscopy by object tilting", Microsc. Anal. (Europe), vol. 44, no. 11, pp. 9-11, 1996.
5. T. Cremer, G. Kreth, H. Koester, R.H.A. Fink, R. Heintzmann, M. Cremer, I. Solovei, D. Zink, and C. Cremer, "Chromosome territories, inter chromatin domain compartment and nuclear matrix: An integrated view on the functional nuclear architecture", Crit. Rev. Eukar. Gene, vol. 12, pp. 179-212, 2000.
6. M. Durm, I. Sorokine-Durm, F-M. Haar, M. Hausmann, H. Ludwig, P. Voisin, and C. Cremer, "Fast-FISH Technique for rapid, simultaneous labeling of all human centromeres". Cytometry, vol. 31, pp. 153-162, 1998.
7. R. Heintzmann, G. Kreth, and C. Cremer, "Reconstruction of axial tomographic high resolution data from confocal fluorescence microscopy: a method for improving 3D FISH images", Anal. Cell. Pathol., vol. 20, pp. 7-15, 2000.
8. M. Kozubek, S. Kozubek, E. Lukasova, A. Mareckova, E. Bartova, M. Skalnikova, and A. Jergova, "High-resolution cytometry of FISH dots in interphase cell nuclei", Cytometry, vol. 36, pp. 279-293, 1999.
9. M. Kozubek, "Theoretical versus experimental resolution in optical microscopy", Microsc. Res. Techniq., vol. 53, pp. 157-166, 2001.
10. M. Kozubek, S. Kozubek, E. Lukasova, E. Bartova, M. Skalnikova, Pa. Matula, Pe. Matula, P. Jirsova, A. Ganova, and I. Koutna, "Combined confocal and wide-field high-resolution cytometry of FISH stained cells", Cytometry, vol. 45, pp. 1-12, 2001.
11. M. Kozubek, "FISH imaging", Confocal and two-photon microscopy: Foundations, applications, and advances (A. Diaspro, Ed.). New York: Wiley-Liss, 2001.
12. P. Matula and M. Kozubek, "An efficient algorithm for 3D image alignment in axial tomography", submitted.
13. H. Netten, I.T. Young, I.J. Van Vliet, H.J. Tanke, H. Vrolijk, and W.C.R. Sloos, "FISH and chips: Automation of fluorescent dot counting in interphase cell nuclei", Cytometry, vol. 28, pp. 1-10, 1997.
14. C. Ortiz de Solórzano, A. Santos, I. Vallcorba, J.M. García-Sagredo, F. Pozo, "Automated FISH spot counting in interphase nuclei: statistical validation and data correction", Cytometry, vol. 31, pp. 93-99, 1998.
15. B. Rinke, J. Bradl, P. Edelmann, B. Schneider, M. Hausmann, and C. Cremer, "Image acquisition and calibration methods in quantitative confocal laser scanning microscopy", Proc. SPIE, vol. 2926, pp. 190-200, 1996.
16. K. Sätzler and R. Eils, "Resolution improvement by 3-D reconstructions from tilted views in axial tomography and confocal theta microscopy", Bioimaging, vol. 5, pp. 171-182, 1997.
17. P.J. Shaw, D.A. Agard, Y. Hiraoka, and J.W. Sedat, "Tilted view reconstruction in optical microscopy: Three-dimensional reconstruction of Drosophila melanogaster embryo nuclei", Biophys. J., vol. 55, pp. 101-110, 1989.
18. R.J. Skaer and S. Whytock, "Interpretation of the three-dimensional structure of living nuclei by specimen tilt", J. Cell Sci., vol. 19, pp. 1-10, 1975.
19. P. Török, S.J. Hewlett, P. Varga, "The role of specimen-induced spherical aberration in confocal microscopy", J. Microsc., vol. 188, pp. 158-172, 1997.