Development of a real-time PCR-based system targeting the 16S rRNA gene sequence for rapid detection of Alicyclobacillus spp. in juice products

International Journal of Food Microbiology

Volumn 99, Issue 3, 2005, Pages 229-235

  Connor, Christopher J ^a   Luo, Hongliang ^a   McSpadden Gardener, Brian B ^a   Wang, Hua H ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

16S rRNA gene; Alicyclobacillus spp.; Juice products; Real time TaqMan assay

Indexed keywords

RIBOSOME RNA;

ALICYCLOBACILLUS; ARTICLE; BACTERIAL COUNT; BACTERIUM CULTURE; BACTERIUM DETECTION; CULTURE MEDIUM; FOOD INDUSTRY; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; QUALITY CONTROL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; RNA TRANSLATION; THERMOPHILIC BACTERIUM;

ALICYCLOBACILLUS; BACTERIA (MICROORGANISMS);

EID: 16244413990     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2004.08.016     Document Type: Article

References (26)

1. L. Albuquerque, F.A. Rainey, A.P. Chung, A. Sunna, M.F. Nobre, R. Grote, G. Antranikian, and M.S. da Costa Alicyclobacillus hesperidum sp. nov. and a related genomic species from solfataric soils of Sao Miguel in the Azores International Journal of Systematic and Evolutionary Microbiology 50 2000 451 457
2. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool Journal of Molecular Biology 215 1990 403 410
3. K. Danbing, C. Menard, F.J. Picard, M. Boissinot, M. Ouellette, P.H. Roy, and M.G. Bergeron Development of conventional and real-time PCR assays for the rapid detection of group B Streptococci Clinical Chemistry 46 2000 324 331
4. K. Goto, Y. Tanimoto, T. Tamura, K. Mochida, D. Arai, M. Asahara, M. Suzuki, H. Tanaka, and K. Inagki Identification of thermophilic bacteria and a new Alicyclobacillus genomic species isolated from acidic environments in Japan Extremophiles 6 2002 333 340
5. K. Goto, H. Matsubara, K. Mochida, T. Matsumura, Y. Hara, M. Niwa, and K. Yamasato Alicyclobacillus herbarius sp. nov., a novel bacterium with ω-cycloheptane fatty acids, isolated from herbal tea International Journal of Systematic and Evolutionary Microbiology 52 2002 109 113
6. K. Goto, K. Mochida, M. Asahara, M. Suzuki, H. Kasai, and A. Yokota Alicyclobacillus pomorum sp. nov., a novel thermo-acidophilic, endospore-forming bacterium that does not possess omega-alicyclic fatty acids, and emended description of the genus Alicyclobacillus International Journal of Systematic and Evolutionary Microbiology 53 2003 1537 1544
7. R.A. Haugland, S.J. Vesper, and L.J. Wymer Quantitative measurement of Stachybotrys chartarum conidia using real time detection of PCR products with the TaqMan fluorogenic probe system Molecular and Cellular Probes 13 1999 329 340
8. I. Hein, D. Klein, A. Lehner, A. Bubert, E. Brandl, and M. Wagner Detection and quantification of the iap gene of Listeria monocytogenes and Listeria innocua by a new real-time quantitative PCR assay Research in Microbiology 152 2001 37 46
9. K. Kaiser, M. Rabodonirina, and S. Picot Real time quantitative PCR and RT-PCR for analysis of Pneumocystis carinii hominis Journal of Microbiological Methods 45 2001 13 118
10. M.A. Khadre, and A.E. Yousef Sporicidal action of ozone and hydrogen peroxide: a comparative study International Journal of Food Microbiology 71 2001 131 138
11. I.U. Khan, and J.S. Yadav Real-time PCR assays for genus-specific detection and quantification of culturable and non-culturable mycobacteria and pseudomonads in metalworking fluids Molecular and Cellular Probes 18 2004 67 73
12. H. Luo, A.E. Yousef, and H.H. Wang A real-time polymerase chain reaction-based method for rapid and specific detection of spoilage Alicyclobacillus spp. in apple juice Letters in Applied Microbiology 39 2004 376 382
13. S.I. Makino, H.I. Cheun, M. Watarai, I. Uchida, and K. Takeshi Detection of anthrax spores from the air by real-time PCR Letters in Applied Microbiology 33 2001 237 240
14. H. Matsubara, K. Goto, T. Matsumura, K. Mochida, M. Iwaki, M. Niwa, and K. Yamasato Alicyclobacillus acidiphilus sp. nov., a new thermo-acidophilic, omega-alicyclic fatty acid-containing bacterium isolated from acidic beverages International Journal of Systematic and Evolutionary Microbiology 52 2002 1681 1685
15. S. McIntyre, J.Y. Ikawa, N. Parkinson, J. Haglund, and J. Lee Characteristics of an acidophilic Bacillus strain isolated from shelf-stable juice Journal of Food Protection 58 1994 319 321
16. J.L. McKillip, and M. Drake Real-time nucleic acid-based detection methods for pathogenic bacteria in food Journal of Food Protection 67 2004 823 832
17. B. McSpadden Gardener, D. Mavrodi, L. Thomashow, and D. Weller A polymerase chain reaction-based assay characterizing rhizosphere populations of 2,4-DAPG-producing-bacteria Phytopathology 91 2001 44 54
18. G.L. Pettipher, M.E. Osmundson, and J.M. Murphy Methods for detection and enumeration of Alicyclobacillus acidoterrestris and investigation of growth and production of taint in fruit juice and fruit juice-containing drinks Letters in Applied Microbiology 24 1997 185 189
19. M.E.M.C. Pinhatti, S. Variane, S.Y. Eguchi, and G.P. Manifo Detection of acidothermophilic bacilli in industrialized fruit juices Fruit Processing 7 1997 350 353
20. M.P. Previdi, S. Quintavalla, C. Lusardi, and E. Vincini Heat resistance of Alicyclobacillus spores in fruit juices Industria Conserve 72 1997 353 358
21. N. Tsuruoka, Y. Isono, O. Shida, H. Hemmi, T. Nakayama, and T. Nishino Alicyclobacillus sendiensis sp. nov., a novel acidophilic, slightly thermophilic species isolated from soil in Sendai, Japan International Journal of Systematic and Evolutionary Microbiology 53 2003 1081 1084
22. P.M. Walsh, and L.L. McKay Recombinant plasmid associated with cell aggregation and high-frequency conjugation of Streptococcus lactis ML3 Journal of Bacteriology 146 1981 937 944
23. W.G. Weisburg, S.M. Barns, D.A. Pelletier, and D.J. Lane 16S ribosomal DNA amplification for phylogenetic study Journal of Bacteriology 173 1991 697 703
24. D.M. Whiley, G.M. LeCornecc, I.M. Mackay, D.J. Siebertc, and T.P. Slootsa A real-time PCR assay for the detection of Neisseria gonorrhoeae by LightCycler Diagnostic Microbiology and Infectious Disease 42 2002 85 89
25. J.D. Wisotzkey, P. Jurtshuk, G.E. Fox, G. Deinhard, and K. Poralla Comparative sequence analysis on the 16s rRNA of Bacillus acidocaldarius and Bacillus acidoterrestris and Bacillus cycloheptanicus and proposal for creation of new genus Alicyclobacillus gen. nov International Journal of Systematic and Evolutionary Microbiology 42 1992 263 269
26. K. Yamazaki, H. Teduka, N. Inoue, and H. Shinano Specific primers for the detection of Alicyclobacillus acidoterrestris by RT-PCR Letters in Applied Microbiology 23 1996 350 354