Automated quantitative analysis of complex lipidomes by liquid chromatography/mass spectrometry

Analytical Chemistry

Volumn 77, Issue 7, 2005, Pages 2166-2175

  Hermansson, Martin ^a   Uphoff, Andreas ^a   Käkelä, Reijo ^a   Somerharju, Pentti ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

LIPID SPECIES; LIPIDOMES; LIPIDOMICS; REPRODUCIBILITY;

BIOMATERIALS; BIOTECHNOLOGY; CELLS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; SENSITIVITY ANALYSIS;

CHEMICAL ANALYSIS;

BIOMATERIAL;

ACCURACY; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BIOLOGY; BIOTECHNOLOGY; DATA ANALYSIS; LIPID COMPOSITION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; QUANTITATIVE ANALYSIS;

ANIMALS; BRAIN CHEMISTRY; CHO CELLS; CHROMATOGRAPHY, LIQUID; CRICETINAE; CRICETULUS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; LIPIDS; MASS SPECTROMETRY; MICE; MICE, INBRED C57BL; REPRODUCIBILITY OF RESULTS; SOFTWARE;

EID: 16244410140     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac048489s     Document Type: Article

References (49)

1. Mills, G. B.; Moolenaar, W. H. Nat. Rev. Cancer 2003, 3, 582-91.
2. Huijbregts, R. P.; Topalof, L.; Bankaitis, V. A. Traffic 2000, 1, 195-202.
3. Pavlidis, P.; Ramaswami, M.; Tanouye, M. A. Cell 1994, 79, 23-33.
4. Bouwstra, J. A.; Honeywell-Nguyen, P. L.; Gooris, G. S.; Ponec, M. Prog. Lipid Res. 2003, 42, 1-36.
5. Piknova, B.; Schram, V.; Hall, S. B. Curr. Opin. Struct. Biol. 2002, 12, 487-94.
6. Han, X.; Yang, J.; Cheng, H.; Ye, H.; Gross, R. W. Anal. Biochem. 2004, 330, 317-31.
7. Forrester, J. S.; Milne, S. B.; Ivanova, P. T.; Brown, H. A. Mol. Pharmacol. 2004, 65, 813-21.
8. Pulfer, M.; Murphy, R. C. 2003, 22, 332-64.
9. Welti, R.; Wang, X. Curr. Opin. Plant Biol. 2004, 7, 337-44.
10. Schneiter, R.; et al. J. Cell Biol. 1999, 146, 741-54.
11. Heikinheimo, L.; Somerharju, P. Traffic 2002, 3, 367-77.
12. Blom, T. S.; et al. Biochemistry 2001, 40, 14635-44.
13. Wenk, M. R.; et al. Nat. Biotechnol. 2003, 21, 813-7.
14. DeLong, C. J.; Shen, Y. J.; Thomas, M. J.; Cui, Z. J. Biol. Chem. 1999, 274, 29683-8.
15. Hunt, A. N.; Clark, G. T.; Attard, G. S.; Postle, A. D. J. Biol. Chem. 2001, 276, 8492-9.
16. Boumann, H. A.; et al. Biochemistry 2003, 42, 3054-9.
17. Brügger, B.; Erben, G.; Sandhoff, R.; Wieland, F. T.; Lehmann, W. D. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 2339-44.
18. Hsu, F. F.; Bohrer, A.; Turk, J. J. Am. Soc. Mass Spectrom. 1998, 9, 516-26.
19. Ekroos, K.; Chernushevich, I. V.; Simons, K.; Shevchenko, A. Anal. Chem. 2002, 74, 941-9.
20. Han, X.; Gross, R. W. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 10635-9.
21. Kim, H. Y.; Wang, T. C.; Ma, Y. C. Anal. Chem. 1994, 66, 3977-82.
22. Taguchi, R.; Hayakawa, J.; Takeuchi, Y.; Ishida, M. J. Mass Spectrom. 2000, 35, 953-66.
23. Larsen, A.; Mokastet, E.; Lundanes, E.; Hvattum, E. J. Chromatogr., B Anal. Technol. Biomed. Life Sci. 2002, 774, 115-20.
24. Kurvinen, J. P.; Aaltonen, J.; Kuksis, A.; Kallio, H. Rapid Commun. Mass Spectrom. 2002, 16, 1812-20.
25. Zacarias, A.; Bolanowski, D.; Bhatnagar, A. Anal. Biochem. 2002, 308, 152-9.
26. Heikinheimo, L.; Somerharju, P. J. Biol. Chem. 1998, 273, 3327-35.
27. Käkelä, R.; Somerharju, P.; Tyynelä, J. J. Neurochem. 2003, 84, 1051-65.
28. Bartlett, E. M.; Lewis, D. H. Anal. Biochem. 1970, 36, 159-67.
29. Folch, J.; Lees, M.; Sloane Stanley, G. H. J. Biol. Chem. 1957, 226, 497-509.
30. Sullards, M. C.; Merrill, A. H., Jr. Sci. STKE 2001, 2001, PL1.
31. Han, X.; Gross, R. W. Anal. Biochem. 2001, 295, 88-100.
32. Koivusalo, M.; Haimi, P.; Heikinheimo, L.; Kostiainen, R.; Somerharju, P. J. Lipid Res. 2001, 42, 663-72.
33. Simons, P.; Niemela, I.; Soininen, T. Artif. Intelligence 2002, 138, 181-234.
34. Guan, Z.; et al. J. Neurochem. 1996, 66, 277-85.
35. Brouwers, J. F.; Vernooij, E. A.; Tielens, A. G.; van Golde, L. M. J. Lipid Res. 1999, 40, 164-9.
36. Hvattum, E.; Hagelin, G.; Larsen, A. Rapid Commun. Mass Spectrom. 1998, 12, 1405-9.
37. Hsu, F. F.; Turk, J. J. Am. Soc. Mass Spectrom. 2000, 11, 986-99.
38. Ekroos, K.; et al. J. Lipid Res. 2003, 44, 2181-92.
39. Li, J. J. Chromatogr., A 2002, 952, 63-70.
40. Di Marco, V. B.; Bombi, G. G. Mathematical functions for the representation of chromatographic peaks. J. Chrom. A 2001, 931, 1-30.
41. Rissanen, J. IEEE Trans. Inf. Theory 2000, 46, 2537-2543.
42. Abian, J.; Oosterkamp, A. J.; Gelpí, E. J. Mass Spectrom. 1999, 34, 244-254.
43. Han, X.; Gross, R. W. J. Lipid Res. 2003, 44, 1071-9.
44. Han, X.; Holtzman, D. M.; McKeel, D. W., Jr. J. Neurochem. 2001, 77, 1168-80.
45. Valianpour, F.; Wanders. R. J.; Barth, P. G.; Overmars, H.; van Gennip, A. H. Clin. Chem. 2002, 48, 1390-7.
46. Dombrowsky, H.; Clark, G. T.; Rau, G. A.; Bernhard, W.; Postle, A. D. Pediatr. Res. 2003, 55, 447-54.
47. Shen, Z.; et al. Gynecol. Oncol. 2001, 83, 25-30.
48. Clish, C. B.; et al. Omics 2004, 8, 3-13.
49. Laurinavičius, S.; Käkelä, R.; Somerharju, P.; Bamford, D. H. Virology 2004, 322, 328-36.