Entamoeba histolytica TATA-box binding protein binds to different TATA variants in vitro

FEBS Journal

Volumn 272, Issue 6, 2005, Pages 1354-1366

  De Dios Bravo, Guadalupe ^a,b   Luna Arias, Juan Pedro ^c   Riverón, Ana María ^d   Olivares Trejo, José J ^c   López Camarillo, César ^b   Orozco, Esther ^c  

^a INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

^b Universidad de la Ciudad de Mexico   (Mexico)

^c DEPARTAMENTO DE FÍSICA   (Mexico)

^d NATL CENTER FOR SCIENTIFIC RESEARCH   (Cuba)

Author keywords

Entamoeba histolytica; KD; Promiscuous DNA binding activity; TATA variants; TATA binding protein

Indexed keywords

TATA BINDING PROTEIN;

ARTICLE; BINDING AFFINITY; BINDING KINETICS; CONTROLLED STUDY; CROSS LINKING; DISSOCIATION CONSTANT; DNA BINDING; ENTAMOEBA HISTOLYTICA; GENE MUTATION; GENETIC TRANSCRIPTION; IN VITRO STUDY; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN MODIFICATION; PROTEIN PROTEIN INTERACTION; SEQUENCE ANALYSIS; TATA BOX; WESTERN BLOTTING;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CONSERVED SEQUENCE; ENTAMOEBA HISTOLYTICA; HUMANS; KINETICS; MOLECULAR SEQUENCE DATA; MUTAGENESIS; PROMOTER REGIONS (GENETICS); PROTOZOAN PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TATA BOX; TATA-BOX BINDING PROTEIN; VARIATION (GENETICS);

ENTAMOEBA HISTOLYTICA;

EID: 15944398239     PISSN: 1742464X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2005.04566.x     Document Type: Article

References (48)

1. Orozco E, Suárez ME & Sánchez T (1985) Differences in adhesion, phagocytosis and virulence of clones from Entamoeba histolytica, strain HM1: IMSS. Int J Parasitol 15, 655-660.
2. De Menezes Feitosa L, Salgado LM, Rodríguez MA, Vargas MA & Orozco E (1997) Phenotype variability and genetic polymorphism in Entamoeba histolytica clonal populations. Arch Med Res 28, 27-29.
3. Padilla-Vaca F, Ankri S, Bracha R, Koole LA & Mirelman D (1999) Down regulation of Entamoeba histolytica virulence by monoxenic cultivation with Escherichia coli O55 is related to a decrease in expression of the light (35-kilodalton) subunit of the Gal/GalNAc lectin. Infect Immun 67, 2096-2102.
4. Bruchhaus I, Roeder T, Lotter H, Schwerdtfeger M & Tannich E (2002) Differential gene expression in Entamoeba histolytica isolated from amoebic liver abscess. Mol Microbiol 44, 1063-1072.
5. Petri WA Jr, Smith RD, Schlesinger PH, Murphy CF & Ravdin JI (1987) Isolation of the galactose-binding lectin that mediates the in vitro adherence of Entamoeba histolytica. J Clin Invest 80, 1238-1244.
6. Tannich E, Ebert F & Horstman RD (1991) Primary structure of the 170-kDa surface lectin of pathogenic Entamoeba histolytica. Proc Natl Acad Sc USA 88, 1849-1853.
7. García-Rivera G, Rodríguez MA, Ocádiz R, Martínez-López MC, Arroyo R, González-Robles A & Orozco E (1999) Entamoeba histolytica: a novel cysteine protease and an adhesin form the 112 kDa surface protein. Mol Microbiol 33, 556-568.
8. Que X & Reed SL (2000) Cysteine proteinases and the pathogenesis of amebiasis. Clin Microbiol Rev 13, 196-206.
9. Bruchhaus I, Loftus BJ, Hall N & Tannich E (2003) The intestinal protozoan parasite Entamoeba histolytica contains 20 cysteine protease genes, of which only a small subset is expressed during in vitro cultivation. Eukaryot Cell 2, 501-509.
10. Zhai Y & Saier MH Jr (2000) The amoebapore superfamily. Biochem Biophys Acta 1469, 87-99.
11. Hahn S (1998) The role of TAFs in RNA polymerase II transcription. Cell 95, 579-582.
12. Berk AJ (1999) Activation of RNA polymerase II transcription. Curr Opin Cell Biol 11, 330-335.
13. Smale ST & Kadonaga JT (2003) The RNA polymerase II core promoter. Annu Rev Biochem 72, 449-479.
14. Lee TI & Young RA (2000) Transcription of eukaryotic protein-coding genes. Annu Rev Genet 34, 77-137.
15. Levine M & Tjian R (2003) Transcription regulation and animal diversity. Nature 424, 147-151.
16. Burley SK & Roeder RG (1996) Biochemistry and structural biology of transcription factor IID (TFIID). Annu Rev Biochem 65, 769-799.
17. Hochheimer A & Tjian R (2003) Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression. Genes Dev 17, 1309-1320.
18. Hernandez N (1993) TBP, a universal eukaryotic transcription factor? Genes Dev 7, 1291-1308.
19. Imbalzano AN, Zaret KS & Kingston RE (1994) Facilitated binding of TATA-binding protein to nucleosomal DNA. J Biol Chem 18, 8280-8286.
20. Bucher P (1990) Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences. J Mol Biol 212, 563-568.
21. Gilchrist CA, Holm CF, Hughes MA, Schaenman JM, Mann BJ & Petri WA Jr (2001) Identification and characterization of an Entamoeba histolytica upstream regulatory element 3 sequence-specific DNA-binding protein containing EF-hand motifs. J Biol Chem 276, 11838-11843.
22. Schaenman JM, Gilchrist CA, Mann BJ & Petri WA Jr (2001) Identification of two Entamoeba histolytica sequence-specific URE4 enhancer-binding proteins with homology to the RNA-binding motif RRM. J Biol Chem 276, 1602-1609.
23. Gómez C, Pérez DG, López-Bayghen E & Orozco E (1998) Transcriptional analysis of the EhPgp1 promoter of Entamoeba histolytica multidrug-resistant mutant. J Biol Chem 273, 7277-7284.
24. Marchat LA, Gómez C, Pérez DG, Paz F, Mendoza L & Orozco E (2002) Two CCAAT/enhancer binding protein sites are cis-activator elements of the Entamoeba histolytica EhPgp1 (mdr-like) gene expression. Cell Microbiol 4, 725-737.
25. Luna-Arias JP, Hernández-Rivas R, de Dios-Bravo G, García J, Mendoza L & Orozco E (1999) The TATA-box binding protein of Entamoeba histolytica: cloning of the gene and location of the protein by immunofluorescence and confocal microscopy. Microbiol 145, 33-40.
26. Mendoza L, Orozco E, Rodríguez MA, García-Rivera G, Sánchez T, García E & Gariglio P (2003) Ehp53, an Entamoeba histolytica protein, ancestor of the mammalian tumour suppressor p53. Microbiol 149, 885-893.
27. Nikolov DB, Chen H, Halay ED, Hoffmann A, Roeder RG & Burley SK (1996) Crystal structure of a human TATA box-binding protein/TATA element complex. Proc Natl Acad Sci USA 93, 4862-4867.
28. De Dios-Bravo G, López C, Luna-Arias JP & Orozco E (2000) DNA binding activity and predicted tertiary structure of the TATA binding protein of Entamoeba histolytica. Arch Med Res 31, S299-S300.
29. Bruchhaus I, Leippe M, Lioutas C & Tannich E (1993) Unusual gene organization in the protozoan parasite Entamoeba histolytica. DNA Cell Biol 12, 925-933.
30. Purdy JE, Pho LT, Mann BJ & Petri WA Jr (1996) Upstream regulatory elements controlling expression of the Entamoeba histolytica lectin. Mol Biochem Parasitol 78, 91-103.
31. Singh U, Gilchrist CA, Schaenman JM, Rogers JB, Hockensmith JW, Mann BJ & Petri WA Jr (2002) Context-dependent roles of the Entamoeba histolytica core promoter element GAAC in transcriptional activation and protein complex assembly. Mol Biochem Parasitol 120, 107-116.
32. Bidder M, Shao JS, Charlton-Kachigian N, Loewy AP, Semenkovich CF & Towler DA (2002) Osteopontin transcription in aortic vascular smooth muscle cells is controlled by glucose-regulated upstream stimulatory factor and activator protein-1 activities. J Biol Chem 277, 44485-44496.
33. Wobbe CR & Struhl K (1990) Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro. Mol Cell Biol 10, 3859-3867.
34. Strubin M & Struhl K (1992) Yeast and human TFIID with altered DNA-binding specificity for TATA elements. Cell 68, 721-730.
35. Coleman RA & Pugh BF (1995) Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA. J Biol Chem 270, 13850-13859.
36. Atkinson AC (1985) The algebra of deletion. In Plots, Transformations and Regression: an Introduction to Graphical Methods of Diagnostic Regression Analysis (Copas, JB, Dawid, AP, Eagleson, GK, Pierce, DA & Silverman, BW, eds), pp. 13-15. Oxford University Press, Oxford, UK.
37. Lopez-Canovas L, Biscay R, Noa MD, PerezPerez G, Herrera JA, Orozco E & Riveron AM (1998) Comparison of DNA migration in two CHEF chambers of different sizes. J Chromat 806, 187-197.
38. Patikoglou GA, Kim JL, Sun L, Yang SH, Kodadek T & Burley SK (1999) TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes Dev 13, 3217-3230.
39. Basehoar AD, Zanton SA & Pugh F (2004) Identification and distinct regulation of yeast TATA box-containing genes. Cell 116, 699-700.
40. Chen W & Struhl K (1988) Saturation mutagenesis of a yeast his3 'TATA element': genetic evidence for a specific TATA-binding protein. Proc Natl Acad Sci USA 85, 2691-2695.
41. Hoopes BC, LeBlanc JF & Hawley DK (1992) Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway. J Biol Chem 16, 11539-11547.
42. Perez-Howard GM, Weil PA & Beechem JM (1995) Yeast TATA binding protein interaction with DNA: Fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics. Biochemistry 34, 8005-8017.
43. Diamond LS, Harlow R & Cunnick C (1978) A new medium for the axenic cultivation of Entamoeba histolytica and other Entamoeba. Trans R Soc Trop Med Hyg 72, 431-432.
44. Richard EJ (1994) Separation of double- and single-stranded nucleic acids using hydroxylapaytite chromatography. In Current Protocols in Molecular Biology (Ausubel, FM, Brent, R, Kingston, RE, Moore, DD, Sheidman, JG, Smith, JA & Struhl, K, eds), pp. 2.13.1-2.13.3. John Wiley & Sons, Inc., Chichester, UK.
45. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
46. Towbin H, Staehelin T & Gordon J (1979) Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci USA 76, 4350-4356.
47. Pérez DG, Gómez C, López-Bayghen E, Tannich E & Orozco E (1998) Transcriptional analysis of the EhPgp5 promoter of Entamoeba histolytica multidrug-resistant mutant. J Biol Chem 273, 7285-7292.
48. Rodríguez MA, Hidalgo ME, Sánchez T & Orozco E (1996) Cloning and characterization of the Entamoeba histolytica pyruvate: ferredoxin oxidoreductase gene. Mol Biochem Parasitol 78, 273-277.