Polymorphisms of the HLA-B and HLA-DRB1 genes in Thai malaria patients

Japanese Journal of Infectious Diseases

Volumn 58, Issue 1, 2005, Pages 25-28

  Hananantachai, Hathairad ^b   Patarapotikul, Jintana ^b   Ohashi, Jun ^a   Naka, Izumi ^a   Looareesuwan, Sornchai ^b   Tokunaga, Katsushi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b MAHIDOL UNIVERSITY   (Thailand)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HLA ANTIGEN; HLA ANTIGEN CLASS 1; HLA ANTIGEN CLASS 2; HLA B ANTIGEN; HLA DR ANTIGEN;

ACCURACY; ADOLESCENT; ADULT; ALLELE; ARTICLE; BRAIN MALARIA; CONTROLLED STUDY; DISEASE SEVERITY; GENE FREQUENCY; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC POLYMORPHISM; HOST RESISTANCE; HUMAN; HUMAN CELL; INFECTION SENSITIVITY; MAJOR CLINICAL STUDY; MALARIA FALCIPARUM; NATURAL SELECTION; PLASMODIUM FALCIPARUM; POPULATION GENETICS; SAMPLE SIZE; THAILAND;

EID: 15844418771     PISSN: 13446304     EISSN: None     Source Type: Journal    
DOI: 10.7883/yoken.jjid.2005.25     Document Type: Article

References (18)

1. Marsh, S. G., Albert, E. D., Bodmer, W. F., Bontrop, R. E., Dupont, B., Erlich, H. A., Geraghty, D. E., Hansen, J. A., Mach, B., Mayr, W. R., Parham, P., Petersdorf, E. W., Sasazuki, T., Schreuder, G. M., Strominger, J. L., Svejgaard, A. and Terasaki, P. I. (2002): Nomenclature for factors of the HLA system, 2002. Hum. Immunol., 63, 1213-1268.
2. Hughes, A. L. and Nei, M. (1988): Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature, 335, 167-170.
3. Hughes, A. L. and Nei, M. (1989): Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proc. Natl. Acad. Sci. USA, 86, 958-962.
4. Hill, A. V., Allsopp, C. E., Kwiatkowski, D., Anstey, N. M., Twumasi, P., Rowe, P. A., Bennett, S., Brewster, D., McMichael, A. J. and Greenwood, B. M. (1991): Common west African HLA antigens are associated with protection from severe malaria. Nature, 352, 595-600.
5. Hill, A. V., Elvin, J., Willis, A. C., Aidoo, M., Allsopp, C. E., Gotch, F. M., Gao, X. M., Takiguchi, M., Greenwood, B. M., Townsend, A. R., et al. (1992): Molecular analysis of the association of HLA-B53 and resistance to severe malaria. Nature, 360, 434, 199.
6. Shankarkumar, U., Devaraj, J. P., Ghosh, K., Karnad, D., Anand, K. and Mohanty, D. (2002): HLA associations in P. falciparum malaria patients from Mumbai, western India. Indian J. Malariol., 39, 76-82.
7. May, J., Lell, B., Luty, A. J., Meyer, C. G. and Kremsner, P. G. (2001): HLA-DQB1*0501-restricted Th1 type immune responses to Plasmodium falciparum liver stage antigen 1 protect against malaria anemia and reinfections. J. Infect. Dis., 183, 168-172.
8. Bennett, S., Allen, S. J., Olerup, O., Jackson, D. J., Wheeler, J. G., Rowe, P. A., Riley, E. M. and Greenwood, B. M. (1993): Human leucocyte antigen (HLA) and malaria morbidity in a Gambian community. Trans. R. Soc. Trop. Med. Hyg., 87, 286-287.
9. Ohashi, J., Naka, I., Patarapotikul, J., Hananantachai, H., Looareesuwan, S. and Tokunaga, K. (2002): Significant association of longer forms of CCTTT Microsatellite repeat in the inducible nitric oxide synthase promoter with severe malaria in Thailand. J. Infect. Dis., 186, 578-581.
10. Omi, K., Ohashi, J., Patarapotikul, J., Hananantachai, H., Naka, I., Looareesuwan, S. and Tokunaga, K. (2003): CD36 polymorphism is associated with protection from cerebral malaria. Am. J. Hum. Genet., 72, 364-374.
11. Kawai, S., Maekawajiri, S., Tokunaga, K., Kashiwase, K., Miyamoto, M., Akaza, T., Juji, T. and Yamane, A. (1996): Routine low and high resolution typing of the HLA-DRB gene using the PCR-MPH (microtitre plate hybridization) method. Eur. J. Immunogenet., 23, 471-486.
12. Excoffier, L. and Slatkin, M. (1995): Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol., 12, 921-927.
13. Schneider. S., Roessli. D. and Excoffier, L. (2000): Arlequin ver. 2.000: A software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
14. Ohashi, J., Yamamoto, S., Tsuchiya, N., Hatta, Y., Komata, T., Matsushita, M. and Tokunaga, K. (2001): Comparison of statistical power between 2 × 2 allele frequency and allele positivity tables in case-control studies of complex disease genes. Ann. Hum. Genet., 65, 197-206.
15. Ohashi, J. and Tokunaga, K. (2002): The expected power of genome-wide linkage disequilibrium testing using single nucleotide polymorphism markers for detecting a low-frequency disease variant. Ann. Hum. Genet., 66, 297-306.
16. McGuire, W., Hill, A. V., Allsopp, C. E., Greenwood, B. M. and Kwiatkowski, D. (1994): Variation in the TNF-alpha promoter region associated with susceptibility to cerebral malaria. Nature, 371, 508-510.
17. Hananantachai, H., Patarapotikul, J., Looareesuwan, S., Ohashi, J., Naka, I. and Tokunaga, K. (2001): Lack of association of -308A/G TNFA promoter and 196R/M TNFR2 polymorphisms with disease severity in Thai adult malaria patients. Am. J. Med. Genet. 102, 391-392.
18. Ohashi, J., Naka, I., Patarapotikul, J., Hananantachai, H., Looareesuwan, S. and Tokunaga, K. (2003): A single-nucleotide substitution from C to T at position -1055 in the IL-13 promoter is associated with protection from severe malaria in Thailand. Genes Immun., 4, 528-531.