메뉴 건너뛰기




Volumn 16, Issue 4, 2005, Pages 505-514

Statistical evaluation of electrospray tandem mass spectra for optimized peptide fragmentation

Author keywords

[No Author keywords available]

Indexed keywords

ELECTRIC POTENTIAL; MASS SPECTROMETRY; STATISTICAL METHODS;

EID: 15744380764     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2005.01.002     Document Type: Article
Times cited : (10)

References (33)
  • 1
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • R. Aebersold, M. Mann Mass spectrometry-based proteomics Nature 422 2003 198 207
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 2
    • 0000501973 scopus 로고    scopus 로고
    • Peptide mass fingerprinting using MALDI-TOF mass spectrometry
    • D.J. Pappin Peptide mass fingerprinting using MALDI-TOF mass spectrometry Methods Mol. Biol. 211 2003 211 219
    • (2003) Methods Mol. Biol. , vol.211 , pp. 211-219
    • Pappin, D.J.1
  • 3
    • 0031568420 scopus 로고    scopus 로고
    • Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level
    • A.L. McCormack, D.M. Schieltz, B. Goode, S. Yang, G. Barnes, D. Drubin, J.R. Yates III. Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level Anal. Chem. 69 1997 767 776
    • (1997) Anal. Chem. , vol.69 , pp. 767-776
    • McCormack, A.L.1    Schieltz, D.M.2    Goode, B.3    Yang, S.4    Barnes, G.5    Drubin, D.6    Iii., R.Y.J.7
  • 4
    • 0034194446 scopus 로고    scopus 로고
    • MALDI quadrupole time-of-flight mass spectrometry: A powerful tool for proteomic research
    • A. Shevchenko, A. Loboda, W. Ens, K.G. Standing MALDI quadrupole time-of-flight mass spectrometry A powerful tool for proteomic research Anal. Chem. 72 2000 2132 2141
    • (2000) Anal. Chem. , vol.72 , pp. 2132-2141
    • Shevchenko, A.1    Loboda, A.2    Ens, W.3    Standing, K.G.4
  • 5
    • 0034132537 scopus 로고    scopus 로고
    • The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer
    • K.F. Medzihradszky, J.M. Campbell, M.A. Baldwin, A.M. Falick, P. Juhasz, M.L. Vestal, A.L. Burlingame The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer Anal. Chem. 72 2000 552 558
    • (2000) Anal. Chem. , vol.72 , pp. 552-558
    • Medzihradszky, K.F.1    Campbell, J.M.2    Baldwin, M.A.3    Falick, A.M.4    Juhasz, P.5    Vestal, M.L.6    Burlingame, A.L.7
  • 6
    • 0035166196 scopus 로고    scopus 로고
    • The nature of collision-induced dissociation processes of doubly protonated peptides: Comparative study for the future use of matrix-assisted laser desorption/ionization on a hybrid quadrupole time-of-flight mass spectrometer in proteomics
    • R. Cramer, S. Corless The nature of collision-induced dissociation processes of doubly protonated peptides Comparative study for the future use of matrix-assisted laser desorption/ionization on a hybrid quadrupole time-of-flight mass spectrometer in proteomics Rapid Commun. Mass Spectrom. 15 2001 2058 2066
    • (2001) Rapid Commun. Mass Spectrom. , vol.15 , pp. 2058-2066
    • Cramer, R.1    Corless, S.2
  • 8
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • M.P. Washburn, D. Wolters, J.R. Yates III. Large-scale analysis of the yeast proteome by multidimensional protein identification technology Nat. Biotechnol. 19 2001 242 247
    • (2001) Nat. Biotechnol. , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Iii., R.Y.J.3
  • 9
    • 0034641742 scopus 로고    scopus 로고
    • Automated de novo sequencing of proteins by tandem high-resolution mass spectrometry
    • D.M. Horn, R.A. Zubarev, F.W. McLafferty Automated de novo sequencing of proteins by tandem high-resolution mass spectrometry Proc. Natl. Acad. Sci. U.S.A. 97 2000 10313 10317
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 10313-10317
    • Horn, D.M.1    Zubarev, R.A.2    McLafferty, F.W.3
  • 10
    • 0035326344 scopus 로고    scopus 로고
    • Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching
    • A. Shevchenko, S. Sunyaev, A. Loboda, P. Bork, W. Ens, K.G. Standing Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching Anal. Chem. 73 2001 1917 1926
    • (2001) Anal. Chem. , vol.73 , pp. 1917-1926
    • Shevchenko, A.1    Sunyaev, S.2    Loboda, A.3    Bork, P.4    Ens, W.5    Standing, K.G.6
  • 12
    • 0036171359 scopus 로고    scopus 로고
    • De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging
    • G. Cagney, A. Emili De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging Nat. Biotechnol. 20 2002 163 170
    • (2002) Nat. Biotechnol. , vol.20 , pp. 163-170
    • Cagney, G.1    Emili, A.2
  • 15
    • 0030033198 scopus 로고    scopus 로고
    • Parent ion scans of unseparated peptide mixtures
    • M. Wilm, G. Neubauer, M. Mann Parent ion scans of unseparated peptide mixtures Anal. Chem. 68 1996 527 533
    • (1996) Anal. Chem. , vol.68 , pp. 527-533
    • Wilm, M.1    Neubauer, G.2    Mann, M.3
  • 16
    • 0038149505 scopus 로고    scopus 로고
    • Noise filtering techniques for electrospray quadrupole time of flight mass spectra
    • J. Kast, M. Gentzel, M. Wilm, K. Richardson Noise filtering techniques for electrospray quadrupole time of flight mass spectra J. Am. Soc. Mass Spectrom. 14 2003 766 776
    • (2003) J. Am. Soc. Mass Spectrom. , vol.14 , pp. 766-776
    • Kast, J.1    Gentzel, M.2    Wilm, M.3    Richardson, K.4
  • 17
    • 0042529112 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption/ionization directed nano-electrospray ionization tandem mass spectrometric analysis for protein identification
    • J. Kast, C.E. Parker, K. van der Drift, J.M. Dial, S.L. Milgram, M. Wilm, M. Howell, C.H. Borchers Matrix-assisted laser desorption/ionization directed nano-electrospray ionization tandem mass spectrometric analysis for protein identification Rapid Commun. Mass Spectrom. 17 2003 1825 1834
    • (2003) Rapid Commun. Mass Spectrom. , vol.17 , pp. 1825-1834
    • Kast, J.1    Parker, C.E.2    Van Der Drift, K.3    Dial, J.M.4    Milgram, S.L.5    Wilm, M.6    Howell, M.7    Borchers, C.H.8
  • 18
    • 0034484286 scopus 로고    scopus 로고
    • Method for screening peptide fragment ion mass spectra prior to database searching
    • R.E. Moore, M.K. Young, T.D. Lee Method for screening peptide fragment ion mass spectra prior to database searching J. Am. Soc. Mass Spectrom. 11 2000 422 426
    • (2000) J. Am. Soc. Mass Spectrom. , vol.11 , pp. 422-426
    • Moore, R.E.1    Young, M.K.2    Lee, T.D.3
  • 19
    • 0002451984 scopus 로고    scopus 로고
    • SCOPE: A probabilistic model for scoring tandem mass spectra against a peptide database
    • V. Bafna, N. Edwards SCOPE A probabilistic model for scoring tandem mass spectra against a peptide database Bioinformatics 17 Suppl. 1 2001 S13 S21
    • (2001) Bioinformatics , vol.17 , Issue.1 SUPPL.
    • Bafna, V.1    Edwards, N.2
  • 20
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • A. Keller, A.I. Nesvizhskii, E. Kolker, R. Aebersold Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal. Chem. 74 2002 5383 5392
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 21
    • 0036828724 scopus 로고    scopus 로고
    • Probability-based validation of protein identifications using a modified SEQUEST algorithm
    • M.J. MacCoss, C.C. Wu, J.R. Yates III Probability-based validation of protein identifications using a modified SEQUEST algorithm Anal. Chem. 74 2002 5593 5599
    • (2002) Anal. Chem. , vol.74 , pp. 5593-5599
    • MacCoss, M.J.1    Wu, C.C.2    Yates III, J.R.3
  • 22
    • 0036209134 scopus 로고    scopus 로고
    • Qscore: An algorithm for evaluating SEQUEST database search results
    • R.E. Moore, M.K. Young, T.D. Lee Qscore An algorithm for evaluating SEQUEST database search results J. Am. Soc. Mass Spectrom. 13 2002 378 386
    • (2002) J. Am. Soc. Mass Spectrom. , vol.13 , pp. 378-386
    • Moore, R.E.1    Young, M.K.2    Lee, T.D.3
  • 23
    • 0036808207 scopus 로고    scopus 로고
    • ProbID: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data
    • N. Zhang, R. Aebersold, B. Schwikowski ProbID A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data Proteomics 2 2002 1406 1412
    • (2002) Proteomics , vol.2 , pp. 1406-1412
    • Zhang, N.1    Aebersold, R.2    Schwikowski, B.3
  • 25
    • 0034212611 scopus 로고    scopus 로고
    • Thermal denaturation: A useful technique in peptide mass mapping
    • Z.Y. Park, D.H. Russell Thermal denaturation A useful technique in peptide mass mapping Anal. Chem. 72 2000 2667 2670
    • (2000) Anal. Chem. , vol.72 , pp. 2667-2670
    • Park, Z.Y.1    Russell, D.H.2
  • 26
    • 0038305949 scopus 로고    scopus 로고
    • Specific nitration at tyrosine 430 revealed by high resolution mass spectrometry as basis for redox regulation of bovine prostacyclin synthase
    • P. Schmidt, N. Youhnovski, A. Daiber, A. Balan, M. Arsic, M. Bachschmid, M. Przybylski, V. Ullrich Specific nitration at tyrosine 430 revealed by high resolution mass spectrometry as basis for redox regulation of bovine prostacyclin synthase J. Biol. Chem. 278 2003 12813 12819
    • (2003) J. Biol. Chem. , vol.278 , pp. 12813-12819
    • Schmidt, P.1    Youhnovski, N.2    Daiber, A.3    Balan, A.4    Arsic, M.5    Bachschmid, M.6    Przybylski, M.7    Ullrich, V.8
  • 27
    • 84987419408 scopus 로고
    • Proposal for a common nomenclature for sequence ions in mass spectra of peptides
    • P. Roepstorff, J. Fohlman Proposal for a common nomenclature for sequence ions in mass spectra of peptides Biomed. Mass Spectrom. 11 1984 601
    • (1984) Biomed. Mass Spectrom. , vol.11 , pp. 601
    • Roepstorff, P.1    Fohlman, J.2
  • 28
    • 0023804303 scopus 로고
    • Contributions of mass spectrometry to peptide and protein structure
    • K. Biemann Contributions of mass spectrometry to peptide and protein structure Biomed. Environ. Mass Spectrom. 16 1988 99 111
    • (1988) Biomed. Environ. Mass Spectrom. , vol.16 , pp. 99-111
    • Biemann, K.1
  • 29
    • 1542712026 scopus 로고    scopus 로고
    • Application of wavelet transforms to experimental spectra: Smoothing, denoising, and data set compression
    • V.J. Barclay, R.F. Bonner, I.P. Hamilton Application of wavelet transforms to experimental spectra Smoothing, denoising, and data set compression Anal. Chem. 69 1997 78 90
    • (1997) Anal. Chem. , vol.69 , pp. 78-90
    • Barclay, V.J.1    Bonner, R.F.2    Hamilton, I.P.3
  • 30
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • D.N. Perkins, D.J. Pappin, D.M. Creasy, J.S. Cottrell Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 20 1999 3551 3567
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 32
    • 0027918107 scopus 로고
    • Fragmentation reactions of multiply-protonated peptides and implications for sequencing by tandem mass spectrometry with low-energy collision-induced dissociation
    • X.J. Tang, P. Thibault, R.K. Boyd Fragmentation reactions of multiply-protonated peptides and implications for sequencing by tandem mass spectrometry with low-energy collision-induced dissociation Anal. Chem. 65 1993 2824 2834
    • (1993) Anal. Chem. , vol.65 , pp. 2824-2834
    • Tang, X.J.1    Thibault, P.2    Boyd, R.K.3
  • 33
    • 0033467623 scopus 로고    scopus 로고
    • Nanoelectrospray - More than just a minimized-flow electrospray ionization source
    • R. Juraschek, T. Dulcks, M. Karas Nanoelectrospray - more than just a minimized-flow electrospray ionization source J. Am. Soc. Mass Spectrom. 10 1999 300 308
    • (1999) J. Am. Soc. Mass Spectrom. , vol.10 , pp. 300-308
    • Juraschek, R.1    Dulcks, T.2    Karas, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.