Molecular analysis of the CRINKLY4 gene family in Arabidopsis thaliana

Planta

Volumn 220, Issue 5, 2005, Pages 645-657

  Cao, Xueyuan ^a   Li, Kejian ^a   Suh, Sang Gon ^a,b   Guo, Tao ^a   Becraft, Philip W ^a  

^a IOWA STATE UNIVERSITY   (United States)

^b Yeungnam University   (South Korea)

Author keywords

Arabidopsis; CRINKLY4; Evolution; Oryza; Receptor like kinase; Signal transduction

Indexed keywords

CROPS; DNA; ENZYMES; GENETIC ENGINEERING; PLANTS (BOTANY); TISSUE;

ARABIDOPSIS THALIANA; CRINKLY4-RELATED (CRR) PROTEINS; SIGNAL TRANSDUCTION; THREONINE RECEPTORS;

GENES;

ARABIDOPSIS PROTEIN; BACTERIAL DNA; CELL SURFACE RECEPTOR; CRINKLY4 PROTEIN, PLANT; PROTEIN KINASE; T DNA; T-DNA; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; CHEMISTRY; CHROMOSOME MAP; ENZYMOLOGY; FLOWER; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; MULTIGENE FAMILY; MUTATION; PHENOTYPE; PHYLOGENY; PLANT LEAF; PLANT SEED; SEEDLING; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CHROMOSOME MAPPING; DNA, BACTERIAL; FLOWERS; GENE EXPRESSION; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MUTAGENESIS, INSERTIONAL; MUTATION; PHENOTYPE; PHYLOGENY; PLANT LEAVES; PLANT PROTEINS; PROTEIN KINASES; RECEPTORS, CELL SURFACE; SEEDLING; SEEDS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

CORN; ENZYMES; GENES; MOLECULES; NUCLEIC ACIDS; PLANT TISSUES; PLANTS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; ORYZA; ORYZA SATIVA; ZEA MAYS;

EID: 15444369565     PISSN: 00320935     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00425-004-1378-3     Document Type: Article

References (43)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
3. Bannai H, Tamada Y, Maruyama O, Nakai K, Miyano S (2002) Extensive feature detection of N-terminal protein sorting signals. Bioinformatics 18:298-305
4. Banner DW, D'Arcy A, Janes W, Gentz R, Schoenfeld H-J, Broger C, Loetscher H, Lesslauer W (1993) Crystal structure of the soluble human 55 kd TNF receptor-human TNFβ complex: implications for TNF receptor activation. Cell 73:431-445
5. Bechtold N, Pelletier G (1998) In planta Agrobacterium-mediated transformation of adult Arabidopsis thaliana plants by vacuum infiltration. Methods Mol Biol 82:259-266
6. Becraft PW (2001) Plant steroids recognized at the cell surface. Trends Genet 17:60-62
7. Becraft PW (2002) Receptor kinase signaling in plant development. Annu Rev Cell Devel Biol 18:163-192
8. Becraft PW, Asuncion-Crabb YT (2000) Positional cues specify and maintain aleurone cell fate during maize endosperm development. Development 127:4039-4048
9. Becraft PW, Stinard PS, McCarty DR (1996) CRINKLY4: a TNFR-like receptor kinase involved in maize epidermal differentiation. Science 273:1406-1409
10. Becraft PW, Kang S-H, Suh S-G (2001) The maize CRINKLY4 receptor kinase controls a cell-autonomous differentiation response. Plant Physiol 127:486-496
11. Boyle WJ, van der Geer P, Hunter T (1991) Phosphopeptide mapping and phosphoamino acid analysis by two-dimensional separation on thin-layer cellulose plates. Methods Enzymol 201:110-149
12. Cserzo M, Wallin E, Simon I, von Heijne G, Elofsson A (1997) Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method. Protein Eng 10:673-676
13. Gibbs CS, Zoller MJ (1991) Rational scanning mutagenesis of a protein kinase identifies functional regions involved in catalysis and substrate interactions. J Biol Chem 266:8923-8931
14. Gifford ML, Dean S, Ingram GC (2003) The Arabidopsis ACR4 gene plays a role in cell layer organisation during ovule integument and sepal margin development. Development 130:4249-4258
15. Goff SA, Ricke D, Lan TH et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:92-100
16. Gough J, Karplus K, Hughey R, Chothia C (2001) Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J Mol Biol 313:903-919
17. Idriss HT, Naismith JH (2000) TNF alpha and the TNF receptor superfamily: structure-function relationship(s). Microsc Res Tech 50:184-195
18. Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6:3901-3907
19. Jeong S, Trotochaud AE, Clark SE (1999) The Arabidopsis CLAVATA2 gene encodes a receptor-like protein required for the stability of the CLAVATA1 Receptor-like kinase. Plant Cell 11:1925-1933
20. Jin P, Guo T, Becraft PW (2000) The maize CR4 receptor-like kinase mediates a growth factor-like differentiation response. Genesis 27:104-116
21. Kang S-G, Lee HJ, Suh S-G (2002) The maize crinkly4 gene is expressed spatially in vegetative and floral organs. J Plant Biol 45:219-224
22. Kelley LA, MacCallum RM, Sternberg MJ (2000) Enhanced genome annotation using structural profiles in the program 3D-PSSM. J Mol Biol 299:499-520
23. Knighton DR, Zheng J, Ten Eyck LF, Ashford VA, Xuong N-H, Taylor SS, Sowadski JM (1991) Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. Science 253:407-414
24. Kroiher M, Miller MA, Steele RE (2001) Deceiving appearances: signaling by "dead" and "fractured" receptor protein-tyrosine kinases. Bioessays 23:69-76
25. Krysan PJ, Young JC, Sussman MR (1999) T-DNA as an insertional mutagen in Arabidopsis. Plant Cell 11:2283-2290
26. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
27. Lim D, Park HU, De Castro L, Kang SG, Lee HS, Jensen S, Lee KJ, Strynadka NC (2001) Crystal structure and kinetic analysis of beta-lactamase inhibitor protein-II in complex with TEM-1 beta-lactamase. Nat Struct Biol 8:848-852
28. Lynch DK, Ellis CA, Edwards PA, Hiles ID (1999) Integrin-linked kinase regulates phosphorylation of serine 473 of protein kinase B by an indirect mechanism. Oncogene 18:8024-8032
29. McCarty DR, Chory J (2000) Conservation and innovation in plant signaling pathways. Cell 103:201-209
30. Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol Plant 15:473-497
31. Nakai K, Horton P (1999) PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem Sci 24:34-36
32. Nielsen H, Engelbrecht J, Brunak S, von Heijne G (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 10:1-6
33. Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448
34. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
35. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. CSHL Press, Cold Spring Harbor, NY
36. Schafer S, Schmulling T (2002) The CRK1 receptor-like kinase gene of tobacco is negatively regulated by cytokinin. Plant Mol Biol 50:155-166
37. Shiu SH, Bleecker AB (2001a) Plant receptor-like kinase gene family: diversity, function, and signaling. Sci Sig Trans Knowl Environ 2001:RE22. 2
38. Shiu S-H, Bleecker AB (2001b) Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc Natl Acad Sci USA 98:10763-10768
39. Shiu S-H, Karlowski WM, Pan R, Tzeng, Y-H, Mayer KFX, Li W-H (2004) Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. Plant Cell 16:1220-1234
40. Smyth DR, Bowman JL, Meyerowitz EM (1990) Early flower development in Arabidopsis. Plant Cell 2:755-767
41. Tanaka H, Watanabe M, Watanabe D, Tanaka T, Machida C, Machida Y (2002) ACR4, a putative receptor kinase gene of Arabidopsis thaliana, that is expressed in the outer cell layers of embryos and plants, is involved in proper embryogenesis. Plant Cell Physiol 43:419-428
42. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
43. Yamauchi T, Ueki K, Tobe K, Tamemoto H, Sekine N, Wada M, Honjo M, Takahashi M, Takahashi T, Hirai H, Tushima T, Akanuma Y, Fujita T, Komuro I, Yazaki Y, Kadowaki T (1997) Tyrosine phosphorylation of the EGF receptor by the kinase Jak2 is induced by growth hormone. Nature 390:91-96