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Considering that the +gauche and -gauche dispositions of the CONHNHAr moieties have similar energies, and in the absence of detailed structural information concerning the shape of the receptor pocket complementary to this part of the ligand, the -gauche conformation of 23 was selected arbitrarily for the superimposition illustrated in Figure 4. Benzylamide 9′ was modeled with torsion angles (O=)C-N-N-C1′ and N-C-C1′-C2′ of 171.4° and 95.1°, respectively (calculated by the AM1 wave function). The value of the former dihedral falls within the range of and values (-150° to +150°) thought to be relevant for activity, whereas the value of the latter dihedral was selected arbitrarily. Work is in progress to deduce the bioactive orientation of the benzylamide aryl group more accurately through synthesis of conformationally constrained benzylamide analogues.
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44
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15444361644
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note
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The crystal geometry of the hydrazine derivative II (reference code LELYUG) was retrieved from the CSD as the entry structurally most closely related to hydrazides 27-31. We assumed that the C=CNHNMePh moiety of II could represent a good model of the CONHNMePh side chain. The values of the torsion angles C-N-N-C1′ and N-N-C1′-C2′ measured on the crystal structure of II are -122.4° and 31.4°, respectively, which are close to those listed in Table 5 for hydrazides of type CONHNHAr.
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45
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