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Volumn 7, Issue 3, 2003, Pages 229-233

Distribution of 16S rRNA introns among the family Thermoproteaceae and their evolutionary implications

Author keywords

16S rRNA gene; Archaea; Hyperthermophile; Intron; LAGLI DADG like motif; Thermoproteaceae

Indexed keywords

ARCHAEA; CALDIVIRGA MAQUILINGENSIS; ESCHERICHIA COLI; PYROBACULUM; PYROBACULUM OGUNIENSE; THERMOPROTEACEAE; THERMOPROTEUS; THERMOPROTEUS SP. IC-062; VULCANISAETA DISTRIBUTA;

EID: 1542754631     PISSN: 14310651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00792-003-0314-y     Document Type: Article
Times cited : (20)

References (25)
  • 2
    • 0029616336 scopus 로고
    • Mechanisms of intron mobility
    • Belfort M, Perlman PS (1995) Mechanisms of intron mobility. J Biol Chem 270:30237-30240
    • (1995) J Biol Chem , vol.270 , pp. 30237-30240
    • Belfort, M.1    Perlman, P.S.2
  • 3
    • 0030812487 scopus 로고    scopus 로고
    • Homing endonucleases: Keeping the house in order
    • Belfort M, Roberts RJ (1997) Homing endonucleases: keeping the house in order. Nucleic Acid Res 25:3379-3388
    • (1997) Nucleic Acid Res , vol.25 , pp. 3379-3388
    • Belfort, M.1    Roberts, R.J.2
  • 4
    • 0027403542 scopus 로고
    • An intron within the 16S ribosomal RNA gene of the archaeon Pyrobaculum aerophilum
    • Burggraf S, Larsen N, Woese CR, Stetter KO (1993) An intron within the 16S ribosomal RNA gene of the archaeon Pyrobaculum aerophilum. Proc Natl Acad Sci USA 90:2457-2550
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 2457-2550
    • Burggraf, S.1    Larsen, N.2    Woese, C.R.3    Stetter, K.O.4
  • 5
    • 0035883706 scopus 로고    scopus 로고
    • Homing endonucleases: Structure and functional insight into the catalysts of intron/intein mobility
    • Chevalier BS, Stoddard BL (2001) Homing endonucleases: structure and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res 29:3757-3774
    • (2001) Nucleic Acids Res , vol.29 , pp. 3757-3774
    • Chevalier, B.S.1    Stoddard, B.L.2
  • 6
    • 0026438985 scopus 로고
    • Protein-coding introns from the 23S rRNA encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum
    • Dalgaard JZ, Garrett RA (1992) Protein-coding introns from the 23S rRNA encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum. Gene 121:103-110
    • (1992) Gene , vol.121 , pp. 103-110
    • Dalgaard, J.Z.1    Garrett, R.A.2
  • 7
    • 0027190470 scopus 로고
    • A site specific endonuclease encoded by a typical archaeal intron
    • Dalgaard JZ, Garrett RA, Belfort M (1993) A site specific endonuclease encoded by a typical archaeal intron. Proc Natl Acad Sci USA 90:5414-5417
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 5414-5417
    • Dalgaard, J.Z.1    Garrett, R.A.2    Belfort, M.3
  • 8
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 9
    • 0031706562 scopus 로고    scopus 로고
    • Occurrence of introns in the 16S rRNA genes of members of the genus Thermoproteus
    • Itoh T, Suzuki K, Nakase T (1998) Occurrence of introns in the 16S rRNA genes of members of the genus Thermoproteus. Arch Microbiol 170:155-161
    • (1998) Arch Microbiol , vol.170 , pp. 155-161
    • Itoh, T.1    Suzuki, K.2    Nakase, T.3
  • 10
    • 0033031775 scopus 로고    scopus 로고
    • Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines
    • Itoh T, Suzuki K, Sanchez PC, Nakase T (1999) Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines. Int J Syst Bacteriol 49:1157-1163
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 1157-1163
    • Itoh, T.1    Suzuki, K.2    Sanchez, P.C.3    Nakase, T.4
  • 11
    • 0036022418 scopus 로고    scopus 로고
    • Vulcanisaeta distributa gen. nov., sp. nov. and Vulcanisaeta souniana sp. nov., hyperthermophilic, rod-shaped crenarchaeotes isolated from hot springs in Japan
    • Itoh T, Suzuki K, Nakase T (2002) Vulcanisaeta distributa gen. nov., sp. nov. and Vulcanisaeta souniana sp. nov., hyperthermophilic, rod-shaped crenarchaeotes isolated from hot springs in Japan. Int J Syst Evol Microbiol 52:1097-1104
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 1097-1104
    • Itoh, T.1    Suzuki, K.2    Nakase, T.3
  • 12
    • 0022407822 scopus 로고
    • An intron in the 23S ribosomal RNA gene of the archaebacterium Desulfurococcus mobilis
    • Kjems J, Garrett RA (1985) An intron in the 23S ribosomal RNA gene of the archaebacterium Desulfurococcus mobilis. Nature 318:675-677
    • (1985) Nature , vol.318 , pp. 675-677
    • Kjems, J.1    Garrett, R.A.2
  • 13
    • 0026033114 scopus 로고
    • Ribosomal RNA introns in archaea and evidence for RNA conformational changes associated with splicing
    • Kjems J, Garrett RA (1991) Ribosomal RNA introns in archaea and evidence for RNA conformational changes associated with splicing. Proc Natl Acad Sci USA 88:439-443
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 439-443
    • Kjems, J.1    Garrett, R.A.2
  • 15
    • 0028007314 scopus 로고
    • Structural characteristics of the stable RNA introns of archaeal hyperthermophiles and their splicing junctions
    • Lykke-Andersen J, Garrett RA (1994) Structural characteristics of the stable RNA introns of archaeal hyperthermophiles and their splicing junctions. J Mol Biol 243:846-855
    • (1994) J Mol Biol , vol.243 , pp. 846-855
    • Lykke-Andersen, J.1    Garrett, R.A.2
  • 17
    • 21144436272 scopus 로고    scopus 로고
    • Substrate recognition of homing endonuclease I-Ape I in a hyperthermophilic archaeon
    • Hamburg, Germany
    • Morinaga Y, Nomura N, Sako Y, Uchida A (2000) Substrate recognition of homing endonuclease I-Ape I in a hyperthermophilic archaeon (Abstract). Third International Congress on Extremophiles, Hamburg, Germany, p 212
    • (2000) Third International Congress on Extremophiles , pp. 212
    • Morinaga, Y.1    Nomura, N.2    Sako, Y.3    Uchida, A.4
  • 18
    • 0032464903 scopus 로고    scopus 로고
    • Molecular characterization and postsplicing fate of three introns within the single rRNA operon of the hyperthermophilic archaeon Aeropyrum pernix K1
    • Nomura N, Sako Y, Uchida A (1998) Molecular characterization and postsplicing fate of three introns within the single rRNA operon of the hyperthermophilic archaeon Aeropyrum pernix K1. J Bacteriol 180:3635-3643
    • (1998) J Bacteriol , vol.180 , pp. 3635-3643
    • Nomura, N.1    Sako, Y.2    Uchida, A.3
  • 19
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 20
    • 0035073128 scopus 로고    scopus 로고
    • Pyrobaculum oguniense sp. nov., a novel facultative aerobic and hyperthermophilic archaeon growing at up to 97°C
    • Sako Y, Nunoura T, Uchida A (2001) Pyrobaculum oguniense sp. nov., a novel facultative aerobic and hyperthermophilic archaeon growing at up to 97°C. Int J Syst Evol Microbiol 51: 303-309
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 303-309
    • Sako, Y.1    Nunoura, T.2    Uchida, A.3
  • 21
    • 0032710404 scopus 로고    scopus 로고
    • Molecular phylogenetic analysis of archaeal intron-containing genes coding for rRNA obtained from a deep-subsurface geothermal water pool
    • Takai K, Horikoshi K (1999) Molecular phylogenetic analysis of archaeal intron-containing genes coding for rRNA obtained from a deep-subsurface geothermal water pool. Appl Environ Microbiol 65:5586-5589
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5586-5589
    • Takai, K.1    Horikoshi, K.2
  • 22
    • 0001864261 scopus 로고
    • Determination of DNA base composition
    • Goodfellow M, O'Donnell AG (eds) Wiley, Chichester
    • Tamoka J (1994) Determination of DNA base composition. In: Goodfellow M, O'Donnell AG (eds) Chemical methods in prokaryotic systematics. Wiley, Chichester, pp 463-470
    • (1994) Chemical Methods in Prokaryotic Systematics , pp. 463-470
    • Tamoka, J.1
  • 23
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 24
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.