Proton Release and Uptake of pharaonis Phoborhodopsin (Sensory Rhodopsin II) Reconstituted into Phospholipids

Biochemistry

Volumn 43, Issue 11, 2004, Pages 3195-3203

  Iwamoto, Masayuki ^a   Hasegawa, Chisa ^a   Sudo, Yuki ^a   Shimono, Kazumi ^a   Araiso, Tsunehisa ^a   Kamo, Naoki ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; ELECTRODES; GROUND STATE; PH; PHOSPHOLIPIDS; PROTEINS; PROTONS;

CYTOPLASMA; PHOTOREACTION;

BIOCHEMISTRY;

ASPARTIC ACID; BACTERIORHODOPSIN; CHLORIDE; GLUTAMIC ACID; MALTOSE; PHARAONIS PHOBORHODOPSIN; PHOSPHOLIPID; PROTON PUMP; RHODOPSIN; SULFATE; TIN DERIVATIVE; UNCLASSIFIED DRUG;

ARTICLE; DECOMPOSITION; ELECTRODE; MOLECULAR DYNAMICS; NATRONOBACTERIUM PHARAONIS; NONHUMAN; PH; PHOTOTAXIS; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN TRANSPORT; PROTON TRANSPORT;

AMINO ACID SUBSTITUTION; ARCHAEAL PROTEINS; ASPARTIC ACID; BACTERIORHODOPSINS; CARBOXYLIC ACIDS; CAROTENOIDS; GLUTAMIC ACID; HALORHODOPSINS; HYDROGEN-ION CONCENTRATION; LIGHT; NATRONOBACTERIUM; PHOSPHATIDYLCHOLINES; PHOTOLYSIS; PHOTORECEPTORS, MICROBIAL; PROLINE; PROTONS; SENSORY RHODOPSINS;

BACTERIA (MICROORGANISMS); NATRONOBACTERIUM; NATRONOMONAS PHARAONIS;

EID: 1542743836     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi035960n     Document Type: Article

References (50)

1. Hirayama, J., Imamoto, Y., Shichida, Y., Kamo, N., Tomioka, H., and Yoshizawa, T. (1992) Photocycle of phoborhodopsin from haloalkaliphilic bacterium (Natronobacterium pharaonis) studied by low-temperature spectrophotometry, Biochemistry 31, 2093-2098.
2. Scharf, B., Pevec, B., Hess, B., and Engelhard, M. (1992) Biochemical and photochemical properties of the photophobic receptors from Halobacterium halobium and Natronobacterium pharaonis, Eur. J. Biochem. 206, 359-366.
3. Chizhov, I., Schmies, G., Seidel, R., Sydor, J. R., Lüttenberg, B., and Engelhard, M. (1998) The photophobic receptor from natronobacterium pharaonis: temperature and pH dependencies of the photocycle of sensory rhodopsin II, Biophys. J. 75, 999-1009.
4. Spudich, J. L., and Luecke, H. (2002) Sensory rhodopsin II: functional insights from structure, Curr. Opin. Struct. Biol. 12, 540-546.
5. Pebay-Peyroula, E., Royant, A., Landau, E. M., and Navarro, J. (2002) Structural basis for sensory rhodopsin function, Biochim. Biophys. Acta 1565, 196-205.
6. Iwamoto, M., Kandori, H., and Kamo, N. (2003) Photochemical properties of pharaonis phoborhodopsin (sensory rhodopsin II), Recent Res. Dev. Chem. 1, 15-30.
7. Oesterhelt, D., and Stoeckenius, W. (1971) Rhodopsin-like protein from the purple membrane of Halobacterium halobium, Nat. New Biol. 233, 149-152.
8. Haupts, U., Tittor, J., and Oesterhelt, D. (1999) Closing in on bacteriorhodopsin: progress in understanding the molecule, Annu. Rev. Biophys. Biomol. Struct. 28, 367-399.
9. Luecke, H., and Lanyi, J. K. (2003) Structural clues to the mechanism of ion pumping in bacteriorhodopsin, Adv. Protein Chem. 63, 111-130.
10. Matsuno-Yagi, A., and Mukohata, Y. (1977) Two possible roles of bacteriorhodopsin; a comparative study of strains of Halobacterium halobium differing in pigmentation, Biochem. Biophys. Res. Commun. 78, 237-243.
11. Varo, G. (2000) Analogies between halorhodopsin and bacteriorhodopsin, Biochim. Biophys. Acta 1460, 220-229.
12. Essen, L. O. (2002) Halorhodopsin: light-driven ion pumping made simple?, Curr. Opin. Struct. Biol. 12, 516-522.
13. Bogomolni, R. A., and Spudich, J. L. (1982) Identification of a third rhodopsin-like pigment in phototactic Halobacterium halobium, Proc. Natl. Acad. Sci. U.S.A. 79, 6250-6254.
14. Hoff, W. D., Jung, K. H., and Spudich, J. L. (1997) Molecular mechanism of photosignaling by archaeal sensory rhodopsins, Annu. Rev. Biophys. Biomol. Struct. 26, 223-258.
15. Shimono, K., Iwamoto, M., Sumi, M., and Kamo, N. (1997) Functional expression of pharaonis phoborhodopsin in Escherichia coli, FEBS Lett. 420, 54-56.
16. Luecke, H., Schobert, B., Lanyi, J. K., Spudich, E. N., and Spudich, J. L. (2001) Crystal structure of sensory rhodopsin II at 2.4 angstroms: insights into color tuning and transducer interaction, Science 293, 1499-1503.
17. Royant, A., Nollert, P., Edman, K., Neutze, R., Landau, E. M., Pebay-Peyroula, E., and Navarro, J. (2001) X-ray structure of sensory rhodopsin II at 2.1 Å resolution, Proc. Natl. Acad. Sci. U.S.A. 98, 10131-10136.
18. Gordeliy, V. I., Labahn, J., Moukhametzianov, R., Efremov, R., Granzin, J., Schlesinger, R., Buldt, G., Savopol, T., Scheidig, A. J., Klare, J. P., and Engelhard, M. (2002) Molecular basis of transmembrane signaling by sensory rhodopsin II-transducer complex, Nature 419, 484-487.
19. Furutani, Y., Iwamoto, M., Shimono, K., Kamo, N., and Kandori, H. (2002) FTIR spectroscopy of the M photointermediate in pharaonis phoborhodopsin, Biophys. J. 83, 3482-3489.
20. Iwamoto, M., Furutani, Y., Kamo, N., and Kandori, H. (2003) Proton-transfer reactions in the F86D and F86E mutants of pharaonis phoborhodopsin (sensory rhodopsin II), Biochemistry 42, 2790-2796.
21. Engelhard, M., Scharf, B., and Siebert, F. (1996) Protonation changes during the photocycle of sensory rhodopsin II from Natronobacterium pharaonis, FEBS Lett. 395, 195-198.
22. Schmies, G., Lüttenberg, B., Chizhov, I., Engelhard, M., Becker, A., and Bamberg, E. (2000) Sensory rhodopsin II from the haloalkaliphilic Natronobacterium pharaonis: light-activated proton-transfer reaction, Biophys. J. 78, 967-976.
23. Sudo, Y., Iwamoto, M., Shimono, K., Sumi, M., and Kamo, N. (2001) Photo-induced proton transport of pharaonis phoborhodopsin (sensory rhodopsin II) is ceased by association with the transducer, Biophys. J. 80, 916-922.
24. Schmies, G., Engelhard, M., Wood, P. G., Nagel, G., and Bamberg, E. (2001) Electrophysiological characterization of specific interactions between bacterial sensory rhodopsins and their transducers, Proc. Natl. Acad. Sci. U.S.A. 98, 1555-1559.
25. Iwamoto, M., Shimono, K., Sumi, M., Koyama, K., and Kamo, N. (1999) Light-induced proton uptake and release of pharaonis phoborhodopsin detected by a photoelectrochemical cell, J. Phys. Chem. B 103, 10311-10315.
26. Seidel, R., Scharf, B., Gautel, M., Kleine, K., Oesterhelt, D., and Engelhard, M. (1995) The primary structure of sensory rhodopsin II: a member of an additional retinal protein subgroup is coexpressed with its transducer, the halobacterial transducer of rhodopsin II, Proc. Natl. Acad. Sci. U.S.A. 92, 3036-3040.
27. Sudo, Y., Iwamoto, M., Shimono, K., and Kamo, N. (2001) pharaonis phoborhodopsin binds to its cognate truncated transducer even in the presence of a detergent with a 1:1 stoichiometry, Photochem. Photobiol. 74, 489-494.
28. Kandori, H., Shimono, K., Sudo, Y., Iwamoto, M., Shichida, Y., and Kamo, N. (2001) Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore: infrared spectral comparison with bacteriorhodopsin, Biochemistry 40, 9238-9246.
29. Miyazaki, M., Hirayama, J., Hayakawa, M., and Kamo, N. (1992) Flash photolysis study on pharaonis phoborhodopsin from a haloalkaliphilic bacterium (Natronobacterium pharaonis), Biochim. Biophys. Acta 1140, 22-29.
30. Balashov, S. P., Imasheva, E. S., Ebrey, T. G., Chen, N., Menick, D. R., and Crouch, R. K. (1997) Glutamate-194 to cysteine mutation inhibits fast light-induced proton release in bacteriorhodopsin, Biochemistry 36, 8671-8676.
31. Dioumaev, A. K., Richter, H. T., Brown, L. S., Tanio, M., Tuzi, S., Saito, H., Kimura, Y., Needleman, R., and Lanyi, J. K. (1998) Existence of a proton-transfer chain in bacteriorhodopsin: participation of Glu-194 in the release of protons to the extracellular surface, Biochemistry 37, 2496-2506.
32. Essen, L. O., Siegert, R., Lehmann, W. D., and Oesterhelt, D. (1998) Lipid patches in membrane protein oligomers: crystal structure of the bacteriorhodopsin-lipid complex, Proc. Natl. Acad. Sci. U.S.A. 95, 11673-11678.
33. Wegener, A. A., Chizhov, I., Engelhard, M., and Steinhoff, H. J. (2000) Time-resolved detection of transient movement of helix F in spin-labeled pharaonis sensory rhodopsin II, J. Mol. Biol. 301, 881-891.
34. Sudo, Y., Iwamoto, M., Shimono, K., and Kamo, N. (2002) Association between a photointermediate of a M-lacking mutant D75N of pharaonis phoborhodopsin and its cognate transducer, J. Photochem. Photobiol. B 67, 171-176.
35. Sudo, Y., Iwamoto, M., Shimono, K., and Kamo, N. (2002) Tyr-199 and charged residues of pharaonis phoborhodopsin are important for the interaction with its transducer, Biophys. J. 83, 427-432.
36. Hippler-Mreyen, S., Klare, J. P., Wegener, A. A., Seidel, R., Herrmann, C., Schmies, G., Nagel, G., Bamberg, E., and Engelhard, M. (2003) Probing the sensory rhodopsin II binding domain of its cognate transducer by calorimetry and electrophysiology, J. Mol. Biol. 330, 1203-1213.
37. Wegener, A. A., Klare, J. P., Engelhard, M., and Steinhoff, H. J. (2001) Structural insights into the early steps of receptor-transducer signal transfer in archaeal phototaxis, EMBO J. 20, 5312-5319.
38. + release and uptake, and electric events in bacteriorhodopsin, FEBS Lett. 178, 331-335.
39. Grzesiek, S., and Dencher, N. A. (1986) Time-course and stoichiometry of light-induced proton release and uptake during the photocycle of bacteriorhodopsin, FEBS Lett. 208, 337-342.
40. Brown, L. S., Sasaki, J., Kandori, H., Maeda, A., Needleman, R., and Lanyi, J. K. (1995) Glutamic acid 204 is the terminal proton release group at the extracellular surface of bacteriorhodopsin, J. Biol. Chem. 270, 27122-27126.
41. Rammelsberg, R., Huhn, G., Lubben, M., and Gerwert, K. (1998) Bacteriorhodopsin's intramolecular proton-release pathway consists of a hydrogen-bonded network, Biochemistry 37, 5001-5009.
42. Bergo, V., Spudich, E. N., Spudich, J. L., and Rothschild, K. J. (2003) Conformational changes detected in a sensory rhodopsin II-transducer complex, J. Biol. Chem. 278, 36556-36562.
43. Iwamoto, M., Furutani, Y., Sudo, Y., Shimono, K., Kandori, H., and Kamo, N. (2002) Role of Asp193 in chromophore-protein interaction of pharaonis phoborhodopsin (sensory rhodopsin II), Biophys. J. 83, 1130-1135.
44. Ikeura, Y., Shimono, K., Iwamoto, M., Sudo, Y., and Kamo, N. (2003) Arg-72 of pharaonis phoborhodopsin (sensory rhodopsin II) is important for the maintenance of the protein structure in the solubilized states, Photochem. Photobiol. 77, 96-100.
45. Kono, M., Misra, S., and Ebrey, T. G. (1993) pH dependence of light-induced proton release by bacteriorhodopsin, FEBS Lett. 331, 31-34.
46. Zimanyi, L., Varo, G., Chang, M., Ni, B., Needleman, R., and Lanyi, J. K. (1992) Pathways of proton release in the bacteriorhodopsin photocycle, Biochemistry 31, 8535-8543.
47. Sanz, C., Lazarova, T., Sepulcre, F., Gonzalez-Moreno, R., Bourdelande, J. L., Querol, E., and Padros, E. (1999) Opening the Schiff base moiety of bacteriorhodopsin by mutation of the four extracellular Glu side chains, FEBS Lett. 456, 191-195.
48. Lazarova, T., Sanz, C., Sepulcre, F., Querol, E., and Padros, E. (2002) Specific effects of chloride on the photocycle of E194Q and E204Q mutants of bacteriorhodopsin as measured by FTIR spectroscopy, Biochemistry 41, 8176-8183.
49. Arakawa, T., Shimono, K., Yamaguchi, S., Tuzi, S., Sudo, Y., Kamo, N., and Saito, H. (2003) Dynamic structure of pharaonis phoborhodopsin (sensory rhodopsin II) and complex with a cognate truncated transducer as revealed by site-directed 13C solid-state NMR, FEBS Lett. 536, 237-240.
50. Yan, B., Takahashi, T., Johnson, R., and Spudich, J. L. (1991) Identification of signaling states of a sensory receptor by modulation of lifetimes of stimulus-induced conformations: the case of sensory rhodopsin II, Biochemistry 30, 10686-10692.