Bird (blackbody infrared radiative dissociation): Evolution, principles, and applications

Mass Spectrometry Reviews

Volumn 23, Issue 2, 2004, Pages 127-158

  Dunbar, Robert C ^a  

^a CASE WESTERN RESERVE UNIVERSITY   (United States)

Author keywords

BIRD; Dissociation kinetics; Dissociation thermochemistry; FT ICR; Unimolecular dissociation

Indexed keywords

EVAPORATION; IONS; MASS SPECTROMETRY; MOLECULES; POLYPEPTIDES; POLYSACCHARIDES; PROTEINS; REACTION KINETICS; SOLVENTS; TEMPERATURE; WATER;

BLACKBODY INFRARED RADIATION DISSOCIATION; BLACKBODY-RADIATION DRIVEN EVAPORATION; COLLISIONAL DISSOCIATION; HIGH PRESSURE THERMAL DISSOCIATION; HOT FILAMENT ASSISTED DISSOCIATION; INFRARED MULTIPHOTON DISSOCIATION; ION CYCLOTRON RESONANCE MASS SPECTROMETER; OLIGONUCLEOTIDES; THERMOCHEMISTRY; UNIMOLECULAR DISSOCIATION;

DISSOCIATION;

NUCLEOTIDE; PROTEIN;

ARTICLE; CHEMISTRY; INFRARED SPECTROPHOTOMETRY; INSTRUMENTATION; KINETICS; METHODOLOGY;

KINETICS; NUCLEOTIDES; PROTEINS; SPECTROPHOTOMETRY, INFRARED;

EID: 1542365366     PISSN: 02777037     EISSN: None     Source Type: Journal    
DOI: 10.1002/mas.10074     Document Type: Article

References (95)

1. Aaserud DJ, Guan Z, Little DP, McLafferty FW. 1997. DNA sequencing with blackbody infrared radiative dissociation of electrosprayed ions. Int J Mass Spectrom Ion Proc 167(168):705-712.
2. +. J Am Chem Soc 123:6151-6156.
3. n by laser vaporization, their fragmentation and reactions with HCl. Chem Phys Lett 291:459-464.
4. Asano KG, Goeringer DE, McLuckey SA. 1999. Thermal dissociation in the quadrupole ion trap: Ions derived from leucine enkaphalin. Int J Mass Spectrom 187:207-219.
5. Berg C, Achatz U, Beyer M, Joos S, Albert G, Schindler T, Niedner-Schatteburg G, Bondybey VE. 1997. Chemistry and charge transfer phenomena in water cluster cations. Int J Mass Spectrom Ion Proc 167:723-734.
6. n, n = 3 - 50. J Am Chem Soc 118:7386-7389.
7. Beyer MK, Fox BS, Reinhard BM, Bondybey VE. 2001. Wet electrons and how to dry them. J Chem Phys 115:9288-9297.
8. 2+). Int J Mass Spectrom Ion Processes 102:251-267.
9. Bomse DS, Woodin RL, Beauchamp JL. 1978. Multiphoton dissociation of molecules with low power CW infrared lasers. In: Zewail AH, editor. Advances in laser chemistry. Berlin and New York: Springer-Verlag. pp 362-373.
10. Bomse DS, Woodin RL, Beauchamp JL. 1979. Molecular activation with low-intensity CW infrared laser radiation. Multiphoton dissociation of ions derived from diethyl ether. J Am Chem Soc 101:5503-5512.
11. Bomse DS, Beauchamp JL. 1981. Infrared photochemistry of dimethylchloronium, dimethylchloronium-d3 and dimethylchloronium-d6 ions in the gas phase using low-intensity cw laser radiation. Chem Phys Lett 77:25-29.
12. Bondybey VE, Niedner-Schatteburg G. 2000. FT-ICR studies of solvation effects in ionic water cluster reactions. Chem Rev 100:4059-4086.
13. Bondybey VE, Schindler T, Berg C, Beyer M, Achatz U, Joos S, Niedner-Schatteburg G. 2000. Xantheas S, editor. Hydrogen bonding in clusters; Dordrecht: Kluwer Academic Publishers.
14. Busman M, Rockwood AL, Smith RD. 1992. Activation energies for gas-phase dissociations of multiply charged ions from electrospray ionization mass spectrometry. J Phys Chem 96:2397-2400.
15. Butcher DJ, Asano KG, Goeringer DE, McLuckey SA. 1999. Thermal dissociation of gaseous bradykinin ions. J Phys Chem A 103:8664-8671.
16. Chen O, Groh S, Liechty A, Ridge DP. 1999. Binding of nitric oxide to iron porphyrins: Radiative association, blackbody infrared radiative dissociation, and gas-phase association equilibrium. J Am Chem Soc 121:11910-11911.
17. Cooks RG, Patrick JS, Kotiaho T, McLuckey SA. 1994. Thermochemical determinations by the kinetic method. Mass Spectrom Rev 13:287-339.
18. Dunbar RC. 1991. Kinetics of low-intensity infrared laser photo-dissociation. The thermal model and applications of the Tolman theorem. J Chem Phys 95:2537-2548.
19. Dunbar RC. 1994. Kinetics of thermal unimolecular dissociation by ambient infrared radiation. J Phys Chem 98:8705-8712.
20. Dunbar RC. 1996. New approaches to ion thermochemistry via dissociation and association. In: Babcock LM, Adams NG, editors. Advances in gas phase ion chemistry, Vol. 2, Greenwich, CT: JAI Press. pp 87.
21. Dunbar RC. 2003. Blackody infrared radiative dissociation: BIRD. In: Armentrout PB, editor. Encyclopedia of mass spectrometry, Vol. I. Oxford: Elsevier. pp 371-381.
22. Dunbar RC, McMahon TB. 1997. Activation of unimolecular reactions by ambient black-body radiation. Science 279:194-197.
23. 2 laser irradiation. J Chem Phys 96:5069-5075.
24. -. J Am Chem Soc 117:12819-12825.
25. Felitsyn N, Kitova EN, Klassen JS. 2001. Thermal decomposition of a gaseous multiprotein complex studied by black-body infrared radiative dissociation. Investigating the origin of the asymmetric dissociation behavior. Anal Chem 73:4647-4661.
26. Flora JW, Muddiman DC. 2002. Gas-phase ion unimolecular dissociation for rapid phosphopeptide mapping by IRMPD in a Penning ion trap: An energetically favored process. J Am Chem Soc 124:6546-6547.
27. Forst W. 1973. Theory of unimolecular reactions. New York, NY: Academic Press.
28. Freitas MA, Hendrickson CL, Marshall AG. 1999. Gas phase activation energy for unimolecualr dissociation of biomolecular ions determined by focused radiation for gaseous multiphoton energy transfer (FRAGMENT). Rapid Comm Mass Spectrom 13:1639-1642.
29. Freitas MA, Hendrickson CL, Marshall AG. 2000. Determination of relative ordering of activation energies for gas-phase ion unimolecular dissociation by infrared radiation for gaseous multiphoton energy transfer. J Am Chem Soc 122:7768-7775.
30. Garcia B, Ramirez J, Wong S, Lebrilla CB. 2001. Thermal dissociation of protonated cyclodextrin-amino acid complexes in the gas phase. Int J Mass Spectrom 210:215-222.
31. Ge Y, Horn DM, McLafferty FW. 2001. Blackbody infrared radiative dissociation of larger (42 kDa) multiply charged proteins. Int J Mass Spectrom 210(211):203-214.
32. Gilbert RG, Smith SC. 1990. Theory of unimolecular and recombination reactions. Blackwell: Oxford.
33. Giroldo T, Riveros JM. 2002. Keto-enol isomerization of gas-phase 2'-methylacetophenone molecular ions probed by high-temperature near-blackbody-induced dissociation, ion-molecule reactions, and ab initio calculations. J Phys Chem A 106:9930-9938.
34. Gross DS, Zhao YX, Williams ER. 1997. Dissociation of hemeglobin complexes by blackbody infrared radiative dissociation: Molecular specificity in the gas phase? J Am Soc Mass Spectrom 8:519-524.
35. Gross DS, Williams ER. 1996. On the dissociation and conformation of gas-phase methonium ions. Int J Mass Spectrom Ion Proc 157(158):305-318.
36. Hannis JC, Muddiman DC. 2002. Tailoring the gas-phase dissociation and determining the relative energy of activation for dissociation of 7-deaza purine modified oligonucleotides containing a repeated motif. Int J Mass Spectrom 219:139-150.
37. Hiraoka K, Misuze S. 1987. Gas-phase solvation of chloride with water, ethanol, isopropyl alcohol and tert-butyl alchohol. Chem Phys 118:457-466.
38. Holbrook KA, Pilling MJ, Robertson SH. 1996. Unimolecular reactions. New York, NY: Wiley.
39. Janaway GA, Brauman JI. 2000. Negative ion electron photodetachment from a near-blackbody photon source. J Phys Chem A 104:1117-1120.
40. Jockusch RA, Lemoff AS, Williams ER. 2001a. Effect of metal ion and water coordination on the structure of a gas-phase amino acid. J Am Chem Soc 123:12255-12265.
41. Jockusch RA, Lemoff AS, Williams ER. 2001b. Hydration of valine-cation complexes in the gas phase: On the number of water molecules necessary to form a zwitterion. J Phys Chem A 105:10929-10942.
42. Jockusch RA, Paech K, Williams ER. 2000. Energetics from slow infrared multiphoton dissociation of biomolecules. J Phys Chem A 104:3188-3196.
43. +, M=H, Li, Na, K, Rb, and Cs) in the gas phase: Further evidence for zwitterionic arginine. J Phys Chem A 103:9266.
44. Jockusch RA, Williams ER. 1998. Binding energies of proton-bound dimers of imidazole and n-acetylalanine methyl ester obtained by blackbody infrared radiative dissociation. J Phys Chem A 102:4543-4550.
45. Jockusch RA, Schnier PD, Price WD, Strittmatter EF, Demirev PA, Williams ER. 1997. Effects of charge state on fragmentation pathways, dynamics, and activation energies of ubiquitin ions measured by blackbody infrared radiative dissociation. Anal Chem 69:1119-1126.
46. Kitova EN, Bundle DR, Klassen JS. 2002a. Evidence for the preservation of specific intermolecular interactions in gaseous protein-oligosaccharide complexes. J Am Chem Soc 124:9340-9341.
47. Kitova EN, Bundle DR, Klassen JS. 2002b. Thermal dissociation of protein-oligosaccharide complexes in the gas phase: Mapping the intrinsic intermolecular interactions. J Am Chem Soc 124:5902-5913.
48. Kitova EN, Wang WJ, Bundle DR, Klassen JS. 2002. Retention of bioactive ligand conformation in a gaseous protein-trisaccharide complex. J Am Chem Soc 124:13980-13981.
49. Klassen JS, Schnier PD, Williams ER. 1998. Blackbody infrared radiative dissociation of oligonucleotide anions. J Am Soc Mass Spectrom 9:1117-1124.
50. n. J Am Chem Soc 104:1462-1469.
51. Lifshitz C. 2001. Some recent aspects of gas phase ion chemistry. Chem Soc Rev 30:186-192.
52. Lin C-Y, Dunbar RC. 1996. Zero-pressure thermal-radiation induced dissociation of tetraethylsilane cation. J Phys Chem 100:655-659.
53. Lin C-Y, Dunbar RC, Haynes CL, Armentrout PB, Tonner DS, McMahon TB. 1996. Dissociation thermochemistry of tetramethylsilane ion. Comparative determination by thermal dissociation and threshold collisional dissociation. J Phys Chem 100:19659-19665.
54. Lindemann FA. 1922. Discussion on "The Radition Theory of Chemical Action." Trans Faraday Soc 17:598.
55. Lovejoy ER, Bianco R. 2000. Temperature dependence of cluster ion decomposition in a quadrupole ion trap. J Phys Chem A 104:10280-10287.
56. Mason RS, Parry A. 1991. Concerning the thermal-decomposition of protonated ethanol in a high-pressure ion-source and other pyrolysis reactions. Int J Mass Spectrom Ion Proc 108:241-253.
57. McLafferty FW, Aaserud DJ, Guan Z, Little DP, Kelleher NL. 1997. Double-stranded DNA sequencing by tandem mass spectrometry. Int J Mass Spectrom Ion Prc 165:457-466.
58. McLuckey SA, Wells JM, Stephenson JLJ, Goeringer DL. 2000. Novel quadrupole ion trap methods for characterizing the chemistry of gaseous macro-ions. Int J Mass Spectrom 200:137-161.
59. Meot-Ner M. 1984. The ionic hydrogen bond. 4. Intramolecular and multiple bonds. Protonation and complexes of amides and amino acid derivatives. J Am Chem Soc 106:278-283.
60. Meot-Ner M. 1988. Models for strong interactions in proteins and enzymes. 2. Interactions of ions with the peptide link and with imidazole. J Am Chem Soc 110:3075.
61. Meot-Ner M, Dongre AR, Somogyii A, Wysocki VH. 1995. Thermal decomposition kinetics of protonated peptides and peptide dimers, and comparison with surface-induced dissociation. Rapid Commun Mass Spectrom 9:829-836.
62. Meot-Ner (Mautner) M, Speller CV. 1986. Filling of solvent shells about ions. 1. Thermochemical criteria and the effects of isomeric clusters. J Phys Chem 90:6616-6624.
63. Paech K, Jockusch RA, Williams ER. 2002. Slow infrared laser dissociation of molecules in the rapid energy exchange limit. J Phys Chem A 106:9761-9766.
64. Penn SG, Fei H, Green MK, Lebrilla CB. 1997. The use of heated capillary dissociation and collision-induced dissociation to determine the strength of noncovalent bonding interactions in gas-phase peptide-cyclodextrin complexes. J Am Soc Mass Spectrom 8:244-252.
65. Perrin J. 1919. Matter and light: An easy toward formulation of the mechanism of chemical reactions. Ann Phys 11:5-108.
66. Perrin J. 1922. Radiation and chemistry. Trans Faraday Soc 17:546.
67. 2+ from gas-phase ion-water molecule equilibria determinations. J Phys Chem 102:9978-9985.
68. Price WD, Jockusch RA, Williams ER. 1997. Is arginine a zwitterion in the gas phase. J Am Chem Soc 119:11988-11989.
69. Price WD, Jockusch RA, Williams ER. 1998. Binding energies of protonated betaine complexes: A probe of zwitterion structure in the gas phase? J Am Chem Soc 120:3474-3484.
70. Price WD, Schnier PD, Williams ER. 1996. Tandem mass spectrometry of large biomolecule ions by blackbody infrared radiative dissociation. Anal Chem 68:859-866.
71. Price WD, Schnier PD, Williams ER. 1997. Binding energies of the proton-bound amino acids dimers Gly.Gly, Ala.Ala, Gly.Ala, and Lys.Lys measured by blackbody infrared radiative dissociation. J Phys Chem B 101:664-673.
72. Price WD, Williams ER. 1997. Activation of peptide ions by blackbody radiation: Factors that lead to dissociation kinetics in the rapid energy exchange limit, J Phys Chem A 101:8844-8852.
73. Price WD, Schnier PD, Jockusch RA, Strittmatter ER, Williams ER. 1996. Unimolecular reaction kinetics in the high-pressure limit without collisions. J Am Chem Soc 118:10640-10644.
74. n (n = 6 - 8), obtained by blackbody infrared radiative dissociation. J Am Chem Soc 120:5842-5843.
75. 6, M = Mg, Ca, Sr, Ba: Evidence of isomeric structures for magnesium. J Am Chem Soc 121:1986-1987.
76. n, n = 5-7, M = Mg, Ca, Sr, and Ba. J Am Chem Soc 121:8898-8906.
77. Schindler T, Berg C, Niedner-Schatteburg G, Bondybey VE. 1996. Protonated water clusters and their black body radiation induced fragmentation. Chem Phys Lett 250:301-308.
78. Schnier PD, Jurchen JC, Williams ER. 1999. The effective temperature of peptide ions dissociated by sustained off-resonance irradiation collisional activation in Fourier-transform mass spectrometry. J Phys Chem B 103:737-745.
79. Schnier PD, Williams ER. 1998. Analysis of isomeric mixtures using blackbody infrared radiative dissociation: Determining isomeric purity and obtaining individual tandem mass spectra simultaneously. Anal Chem 70:3033-3041.
80. Schnier PD, Price WD, Jockusch RA, Williams ER. 1996. Blackbody infrared radiative dissociation of bradykinin and its analogs: Energetics, dynamics, and evidence for saltbridge structuers in the gas phase . J Am Chem Soc 118:7178-7189.
81. + ions (X = H, Li, Na, K, and Rb) measured by blackbody infrared radiative dissociation
82. Schnier PD, Klassen JS, Strittmatter EF, Williams ER. 1998. Activation energies for dissociation of double strand oligonucleotide anions: Evidence for Watson-Crick base pairing in vacuo. J Am Chem Soc 120:9605-9613.
83. Sena M, Riveros JM. 1997. Thermal dissociation of acetophenone molecular ions activated by infrared radiation. J Phys Chem A 101:4384-4391.
84. Sena M, Riveros J. 2000. Ring-hydrogen participation in the keto-enol isomerization of the acetophenone radical ion. Chem Eur J 6:785-793.
85. Stevens SMJ, Dunbar RC, Price WD, Sena M, Watson CH, Nichols LS, Riveros JM, Richardsono DE, Eyler JR. 2002. Blackbody infrared radiative dissociation of partially solvated tris(2,2′-bipyridine)ruthenium complex ions. J Phys Chem A 106:9686-9694.
86. Stone JA, Wytenberg WJ. 1991. The thermal dehydrogenation of ethanol in a high pressure ion source. Int J Mass Spectrom Ion Proc 104
87. Strittmatter EF, Wong RL, Williams ER. 2000. Effects of gas-phase basicity on the proton transfer between organic bases and trifluoroacetic acid in the gas phase: Energetics of charge solvation and salt bridges. J Phys Chem A 104:10271-10279.
88. - zwitterions: A new class of organic super bases. J Am Chem Soc 122:1247-1248.
89. Strittmatter EF, Schnier PD, Klassen JS, Williams ER. 1999. Dissociation energies of deoxyribose nucleotide dimer anions measured using blackbody infrared radiative dissociation. J Am Soc Mass Spectrom 10:1095.
90. Thorne LR, Beauchamp JL. 1984. Infrared photochemistry of gas-phase ions. In: Bowers MT, editor. Gas phase ion chemistry, Vol. 3. Ions and Light; Orlando: Academic Press. pp 42-99.
91. n (n = 2 - 4), under Fourier transform ion cyclotron resonance conditions. J Phys Chem 98:2002-2004.
92. Tonner DS, Thölmann D, McMahon TB. 1995. Deuterium isotope effect on the radiatively induced unimolecular dissociation of small cluster ions. Chem Phys Lett 233:324-330.
93. Uechi GT, Dunbar RC. 1992. The kinetics of infrared laser photodissociation of n-butylbenzene ions at low pressure. J Chem Phys 96:8897-8905.
94. 2 laser heating and radiative cooling of N-butylbenzene ions. J Chem Phys 98:7888-7897.
95. Woodin RL, Bomse DS, Beauchamp JL. 1979. Multiphoton dissociation of gas phase ions using low-intensity cw laser radiation. In: Moore CB, editor, Chemical and biochemical applications of lasers, Vol. IV. New York, NY: Academic Press. pp 355-388.