Empirical Relationships between Isotope-Edited IR Spectra and Helix Geometry in Model Peptides

Journal of the American Chemical Society

Volumn 126, Issue 8, 2004, Pages 2339-2345

  Barber Armstrong, Wendy ^a   Donaldson, Teraya ^a   Wijesooriya, Himali ^a   Silva, R A Gangani D ^a   Decatur, Sean M ^a  

^a MOUNT HOLYOKE COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; CONFORMATIONS; FREQUENCIES; INFRARED SPECTROSCOPY; ISOTOPES; SYNTHESIS (CHEMICAL);

HELIX GEOMETRY; SECONDARY STRUCTURES;

PROTEINS;

AMIDE; CARBON 13; CARBONYL DERIVATIVE; PEPTIDE DERIVATIVE; POLYPEPTIDE;

ARTICLE; GEOMETRY; INFRARED SPECTROSCOPY; ISOTOPE LABELING; PEPTIDE ANALYSIS; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; STRUCTURE ANALYSIS;

ALANINE; AMIDES; AMINO ACID SEQUENCE; CARBON ISOTOPES; ISOTOPE LABELING; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDES; PROTEIN STRUCTURE, SECONDARY; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 1542337048     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja037863n     Document Type: Article

References (27)

1. Jackson, M.; Mantsch, H. H. Crit. Rev. Biochem. Mol. Biol. 1995, 30, 95-120.
2. Diem, M. Introduction to Modern Vibrational Spectroscopy; John Wiley and Sons: New York, 1993.
3. Krimm, S.; Bandekar, J. Adv. Protein Chemistry 1986, 38, 181-364.
4. (a) Torii, H.; Tasumi, M. J. Chem. Phys. 1992, 96, 3379-3387.
5. (a) Bour P.; Kubelka J.; Keiderling T. A. Biopolymers 2002, 65, 45-59.
6. (b) Kubelka J.; Keiderling T. A. J. Am. Chem. Soc. 2001, 123, 12048-12058.
7. (a) Tadesse, L.; Nazarbaghi, R.; Walters, L. J. Am. Chem. Soc. 1991, 113, 7036-7037.
8. (b) Halverson, K. J.; Sucholeiki, I.; Ashburn, T. T.; Lansbury, P. T. J. Am. Chem. Soc. 1991, 113, 6701-6703.
9. (c) Gordon, L. M.; Lee, K. Y. C.; Lipp, M. M.; Zasadzinski, J. A.; Walther, F. J.; Sherman, M. A.; Waring, A. J. J. Peptide Res. 2000, 55, 330-347.
10. Harris, P. I.; Robillard, G. T.; van Dijk, A. A.; Chapman, D. Biochemistry 1992, 31, 6279-6284.
11. (a) Decatur, S. M.; Antonic, J. J. Am. Chem. Soc. 1999, 121, 11 914-11 915.
12. (b) Decatur, S. M. Biopolymers 2000, 45, 180-185.
13. (c) Silva, R. A. G. D.; Kubelka, J.; Bour, P.; Decatur, S. M.; Keiderling, T. A. Proc. Natl. Acad. Sci. U.S.A. 2000, 197, 8318-8323.
14. Silva, R. A. G. D.; Nguyen, J. Y.; Decatur, S. M. Biochemistry 2002, 41, 15 296-15 303.
15. Venyaminov, S. Y.; Hedstrom, J. F.; Prendergast, F. G. Proteins-Structure Function and Genetics 2001, 45, 81-89.
16. (a) Huang, C. Y.; Getahun, Z.; Wang, T.; DeGrado, W. F.; Gai, F. J. Am. Chem. Soc. 2001, 123, 12 111-12 112.
17. (b) Huang, C.; Getahun, Z.; Zhu, Y.; Klemke, J. W.; DeGrado, W. F.; Gaj, F. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 2788-2793.
18. (a) Marqusee, S.; Robbins, V. H.; Baldwin, R. L. Proc. Natl. Acad. Sci. 1989, 86, 5286-5290.
19. (b) Chakrabartty, A.; Baldwin, R. L. Adv. Prot. Chem. 1995 46, 141-176.
20. (c) Shalongo, W.; Stellwagen, E. Protein Science 1995, 4, 1161-1166.
21. 2O solution. Under these conditions, the backbone amide protons of the peptides exchanged for deuterium. The amide I band of deuterated peptides is shifted to lower frequency and is referred to as the amide I′ band.
22. (a) Williams, S.; Causgrove, T. P.; Gilmanshin, R.; Fang, K. S.; Callender, R. H., Woodruff, W. H.; Dyer, R. B. Biochemistry 1996, 35, 691-697.
23. (b) Yoder, G.; Pancoska, P.; Keiderling, T. A. Biochemistry 1997, 36, 15 123-15 133.
24. (c) Graff, D. K.; Pastrana-Rios, B.; Venyaminov, S. Yu.; Prendergast, F. G. J. Am. Chem. Soc. 1997, 119, 11 282-11 294.
25. 13C modes is inadequate to fully explain the observed spectral trends.
26. Torii, H.; Tasumi, M. Infrared Spectroscopy of Biomolecules; Mantsh, H. M., Chapman, D., Eds.; Wiley: New York, 1996; p 1-18.
27. Huang, R.; Kubelka, J.; Barber-Armstrong, W.; Silva, R. A. G. D.; Decatur, S. M.; Keiderling, T. A. J. Am. Chem. Soc. 2004, 126, 2346-2354.