The Crystal Structure of Pectate Lyase Pel9A from Erwinia chrysanthemi

Journal of Biological Chemistry

Volumn 279, Issue 10, 2004, Pages 9139-9145

  Jenkins, John ^a   Shevchik, Vladimir E ^b   Hugouvieux Cotte Pattat, Nicole ^b   Pickersgill, Richard W ^c  

^a INSTITUTE OF FOOD RESEARCH   (United Kingdom)

^b Unité de Microbiologie et Génétique   (France)

^c QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM; CATALYST ACTIVITY; CRYSTAL STRUCTURE; ENZYMES; POLYSACCHARIDES;

SUPERHELICAL STRUCTURE;

BIOCHEMISTRY;

ASPARAGINE; CALCIUM BINDING PROTEIN; PECTATE LYASE; PECTATE LYASE PEL9A; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; COMPLEX FORMATION; CRYSTAL STRUCTURE; ELECTRON TRANSPORT; ENZYME ACTIVE SITE; ENZYME STRUCTURE; ENZYME SUBSTRATE; ERWINIA; MICHAELIS CONSTANT; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; PROTON TRANSPORT; STRUCTURE ANALYSIS;

MODELS, MOLECULAR; PECTOBACTERIUM CHRYSANTHEMI; POLYSACCHARIDE-LYASES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY;

BACTERIA (MICROORGANISMS); ERWINIA; ERWINIA CHRYSANTHEMI; NEGIBACTERIA;

EID: 1542335438     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M311390200     Document Type: Article

References (40)

1. Coutinho, P. M. & Henrissat, B. (1999) in Recent Advances in Carbohydrate Bioengineering (Gilbert, H. J., Davies, G., Henrissat, B. & Svensson, B., eds) pp. 3-12, The Royal Society of Chemistry, Cambridge, UK
2. Esnouf, R. M. (1997) J. Mol. Graph. 15, 132-134
3. Yoder, M. D., Keen, N. T. & Jurnak, F. (1993) Science 260, 1503-1507
4. Pickersgill, R., Jenkins, J., Harris, G., Nasser, W. & Robert-Baudouy, J. (1994) Nat. Struct. Biol. 1, 717-723
5. Lietzke, S. E., Scavetta, R. D., Yoder, M. D. & Jurnak, F. (1996) Plant Physiol. 111, 73-92
6. Akita, M., Suzuki, A., Kobayashi, T., Ito, S. & Yamanem, T. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 1786-1792
7. Huang, W., Matte, A., Li, Y., Kim, Y. S., Linhardt, R. J., Su, H. & Cygler, M. (1999) J. Mol. Biol. 294, 1257-1269
8. Jenkins, J., Lo Leggio, L., Harris, G. & Pickersgill, R. (1995) FEBS Lett. 362, 281-285
9. Henrissat, B., Callebaut, I., Fabrega S., Lehn, P., Mornon, J. P. & Davies, G. J. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 7090-7094
10. Petersen, T. N., Kauppinen, S. & Larsen, S. (1997) Structure 5, 533-544
11. Pickersgill, R., Smith, D., Worboys, K. & Jenkins, J. (1998) J. Biol. Chem. 273, 24660-24664
12. Rigden, D. J. & Franco, O. L. (2002) FEBS Lett. 530, 225-232
13. Jenkins, J., Mayans, O., Smith, D., Worboys, K. & Pickersgill, R. (2001) J. Mol. Biol. 305, 951-960
14. Jenkins, J. & Pickersgill, R. (2001) Prog. Biophys. Mol. Biol. 77, 111-175
15. Shevchik, V. E., Condemine, G., Robert-Baudouy, J. & Hugouvieux-Cotte-Pattat, N. (1999) J. Bacteriol. 181, 3912-3919
16. Scavetta, R. D., Herron, S. R., Hotchkiss, A. T., Kita, N., Keen, N. T., Benen, J. A. E., Kester, H. C. M., Visser, J. & Jurnak, F. (1999) Plant Cell 11, 1081-1092
17. Mayans, O., Scott, M., Connerton, I., Gravesen, T., Benen, J., Visser, J., Pickersgill, R. & Jenkins, J. (1997) Structure 5, 677-689
18. Lojkowska, E., Masclaux, C., Boccara, M., Robert-Baudouy, J. & Hugouvieux-Cotte-Pattat, N. (1995) Mol. Microbiol. 16, 1183-1195
19. Roy, C., Kester, H., Visser, J., Shevchik, V., Hugouvieux-Cotte-Pattat, N., Robert-Baudouy, J. & Benen, J. (1999) J. Bacteriol. 181, 3705-3709
20. Murzin, A. G. & Bateman, A. (2001) Proteins Suppl. 5, 76-85
21. Shevchik, V., Scott, M., Mayans, O. & Jenkins, J. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 419-422
22. Otwinowski, Z. & Minor, W. (1997) Methods Enzymol. 276, 307-326
23. Brünger, A. T., Adams, P. D., Clore, G. M., Delano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, N., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
24. Collaborative Computational Project Number 4 (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-767
25. Cowtan, D. & Main, P. (1996) Acta Crystallogr. Sect. D Biol. Crystallogr. 52, 43-48
26. Otwinowski, Z. (1991) in Isomorphous Replacement and Anomalous Scattering (Wolf, W. & Leslie, A. G. W., eds) pp. 80-86, Daresbury CCP4 Study Weekend Proceedings, SERC, Daresbury Laboratory, Warrington, UK
27. Perrakis, A., Sixma, T. K., Wilson, K. S. & Lamzin, V. S. (1997) Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 448-455
28. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997) Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 240-255
29. Jones, T. A., Zou, J-T., Cowan, S. W. & Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
30. Laskowski, R. A., MacAuthur, M. W., Moss, D. S. & Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
31. Notredame, C., Higgins, D. G. & Heringa, J. (2000) J. Mol. Biol. 302, 205-217
32. Herron, S. R., Scarvetta, R. D., Garrett, M., Legner, M. & Jurnak, F. (2003) J. Biol. Chem. 278, 12271-12277
33. Anderson, V. E. (1998) in Comprehensive Biological Catalysis: A Mechanistic Reference (Sinnnot, M., ed) Vol. 2, pp. 115-133, Academic Press, London
34. Herren, S. R., Benen, J. A. E., Scavetta, R. D., Visser, J. & Jurnak, F. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 8762-8769
35. Charnock, S. J., Brown, I. E., Turkenburg, J. P., Black, G. W. & Davies, G. J. (2002) Proc. Natl. Acad. U. S. A. 99, 12067-12072
36. Gerlt, J. A. & Gassmann, P. G. (1992) J. Am. Chem. Soc. 114, 5928-5934
37. Gerlt, J. A. & Gassmann, P. G. (1993) Biochemistry 32, 11943-11952
38. More O'Ferrall, R. A. (1970) J. Chem. Soc. Sect. B, 274-277
39. Jenks, W. P. (1980) Acc. Chem. Res. 13, 161-169
40. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950