Fine mapping of three quantitative trait loci for late blight resistance in tomato using near isogenic lines (NILs) and sub-NILs

Theoretical and Applied Genetics

Volumn 108, Issue 4, 2004, Pages 628-638

  Brouwer, D J ^a   St Clair, D A ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES; CULTIVATION; DISEASE CONTROL; GENES; MICROORGANISMS; POPULATION STATISTICS;

HORTICULTURE; QUANTITATIVE TRAIT LOCI (QTL);

PLANTS (BOTANY);

ANALYSIS OF VARIANCE; ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; CROSS BREEDING; GENETICS; INNATE IMMUNITY; MICROBIOLOGY; PHENOTYPE; PHYTOPHTHORA; PLANT DISEASE; QUANTITATIVE TRAIT LOCUS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; TOMATO;

ANALYSIS OF VARIANCE; CHROMOSOME MAPPING; CROSSES, GENETIC; IMMUNITY, NATURAL; LYCOPERSICON ESCULENTUM; PHENOTYPE; PHYTOPHTHORA; PLANT DISEASES; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; QUANTITATIVE TRAIT LOCI;

LYCOPERSICON; LYCOPERSICON ESCULENTUM; LYCOPERSICON HIRSUTUM; PHYTOPHTHORA; PHYTOPHTHORA INFESTANS;

EID: 1542288797     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-003-1469-8     Document Type: Article

References (46)

1. Alpert KB, Tanksley SD (1996) High-resolution mapping and isolation of a yeast artificial chromosome contig containing fw2.2 - a major fruit weight quantitative trait locus in tomato. Proc Natl Acad Sci USA 93:15503-15507
2. Bernacchi D, Tanksley SD (1997) An interspecific backcross of Lycopersicon esculentum x L. hirsutum: linkage analysis and a QTL study of sexual compatibility factors and floral traits. Genetics 147:861-877
3. Bernacchi D, Beck-Bunn T, Emmatty D, Eshed Y, Inai S, Lopez J, Petiard V, Sayama H, Uhlig J, Zamir D, Tanksley S (1998a) Advanced backcross QTL analysis of tomato. II. Evaluation of near-isogenic lines carrying single-donor introgressions for desirable wild QTL-alleles derived from Lycopersicon hirsutum and L. pimpinellifolium. Theor Appl Genet 97:1191-1196
4. Bernacchi D, Beck-Bunn T, Eshed Y, Lopez J, Petiard V, Uhlig, J, Zamir D, Tanksley S (1998b) Advanced backcross QTL analysis in tomato. I. Identification of QTLs for traits of agronomic importance from Lycopersicon hirsutum. Theor Appl Genet 97:381-397
5. Brouwer DJ, Jones ES, St. Clair DA (2003) QTL analysis of quantitative resistance to Phytophthora infestans (late blight) in tomato, and comparisons to potato. Genome (in press)
6. Chunwongse J, Chunwongse C, Black LL, Hanson PM (1998) Mapping of the Ph3 gene for late blight from L. pimpinellifolium L3708. Rep Tomato Genet Coop 48:963-971
7. Collins A, Milbourne D, Ramsay L, Meyer R, Chatot-Balandras C, Oberhagemann P, De Jong W, Gebhardt C, Bonnel E, Waugh R (1999) QTL for field resistance to late blight in potato are strongly correlated with maturity and vigour. Mol Breed 5:387-398
8. Eshed Y, Zamir D (1995) An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. Genetics 141:1147-1162
9. Ewing EE, Simko I, Smart CD, Bonierbale MW, Mizubuti ESG, May GD, Fry WE (2000) Genetic mapping from field tests of qualitative and quantitative resistance to Phytophthora infestans in a population derived from Solanum tuberosum and Solarium berthaultii. Mol Breed 6:25-36
10. Fridman E, Liu YS, Carmel-Goren L, Gur A, Shoresh M, Pleban T, Eshed Y, Zamir D (2002) Two tightly linked QTLs modify tomato sugar content via different physiological pathways. Mol Genet Genomics 266:821-826
11. Fry WE, Goodwin SB (1997) Re-emergence of potato and tomato late blight in the United States. Plant Dis 81:1349-1357
12. Fulton TM, Chunwongse J, Tanksley SD (1995) Microprep protocol for the extraction of DNA from tomato and other herbaceous plants. Plant Mol Biol Rep 13:207-209
13. Fulton TM, Beck-Bunn T, Emmatty D, Eshed Y, Lopez J, Petiard V, Uhlig J, Zamir D, Tanksley SD (1997) QTL analysis of an advanced backcross of Lycopersicon peruvianum to the cultivated tomato and comparisons with QTLs found in other wild species. Theor Appl Genet 95:881-894
14. Gallegly ME (1960) Resistance to the late blight fungus in tomato. Proceedings Plant Science Seminar. Campbell Soup Co., Camden, N.J., p 113-135
15. Ganal MW, Tanksley SD (1991) Recombination around the Tm2a and Mi resistance genes in different crosses of Lycopersicon pimpinellifolium. Theor Appl Genet 92:935-951
16. Gardner RG (1992) Mountain Spring NC 8276 and NC 84173 tomato breeding lines. Hortscience 27:1233-1234
17. Gebhardt C, Valkonen JPT (2001) Organization of genes controlling disease resistance in the potato genome. Annu Rev Phytopathol 39:79-102
18. Graham GI, Wolff DW, Stuber CW (1997) Characterization of a yield quantitative trait locus on chromosome five of maize by fine mapping. Crop Sci 37:1601-1610
19. Grandillo S, Ku HM, Tanksley SD (1999) Identifying the loci responsible for natural variation in fruit size and shape in tomato. Theor Appl Genet 99:978-987
20. Grube RC, Radwanski ER, Jahn M (2000) Comparative genetics of disease resistance within the Solanaceae. Genetics 155:873-887
21. James C (1971) A manual of assessment keys for plant diseases. Canada Department of Agriculture. Publication No. 1458
22. Kearsey MJ, Farquhar AGL (1998) QTL analysis in plants - where are we now. Heredity 80:137-142
23. Konieczny A, Ausubel FM (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 4:403-410
24. Ku HM, Grandillo S, Tanksley SD (2000) fs8.1, a major QTL, sets the pattern of tomato carpel shape well before anthesis. Theor Appl Genet 101:873-878
25. Kuhl JC, Hanneman RE, Havey MJ (2001) Characterization and mapping of Rpi1, a late-blight resistance locus from diploid (1EBN) Mexican Solanum pinnatisectum. Mol Genet Genomics 265:977-985
26. Leonards-Schippers C, Gieffers W, Schaferpregl R, Ritter E, Knapp SJ, Salamini F, Gebhardt C (1994) Quantitative resistance to Phytophthora infestans in potato - a case study for QTL mapping in an allogamous plant species. Genetics 137:67-77
27. Lincoln S, Daly M, Lander ES (1992) Constructing genetic maps with MAPMAKER/EXP 3.0, 3rd edn. The Whitehead Institute Technical Report
28. Monforte AJ, Tanksley SD (2000) Fine mapping of a quantitative trait locus (QTL) from Lycopersicon hirsutum chromosome 1 affecting fruit characteristics and agronomic traits: breaking linkage among QTLs affecting different traits and dissection of heterosis for yield. Theor Appl Genet 100:471-479
29. Moreau P, Thoquet P, Olivier J, Laterrot H, Grimsley N (1998) Genetic mapping of Ph-2, a single locus controlling partial resistance to Phytophthora infestans in tomato. Mol Plant-Microbe Interact 11:259-269
30. Naess SK, Bradeen JM, Wielgus SM, Haberlach GT, McGrath JM, Helgeson JP (2000) Resistance to late blight in Solanum bulbocastanum is mapped to chromosome 8. Theor Appl Genet 101:697-704
31. Oberhagemann P, Chatot-Balandras C, Schafer-Pregl R, Wegener D, Palomino C, Salamini F, Bonnel E, Gebhardt C (1999) A genetic analysis of quantitative resistance to late blight in potato: towards marker-assisted selection. Mol Breed 5:399-415
32. Paterson AH, De-Verna JW, Lanini B, Tanksley SD (1990) Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes, in an interspecific cross of tomato. Genetics 124:735-742
33. Pillen K, Pineda O, Lewis CB, Tanksley SD (1996) Status of genome mapping tools in the taxon Solanaceae. In: Paterson AH (ed) Genome mapping in plants. Landes, Austin, Tex., pp 281-307
34. Rick CM (1969) Controlled introgression of chromosomes from Solanum pennellii into Lycopersicion esculentum: segregation and recombination. Genetics 62:753-768
35. Robert VJM, West MAL, Inai S, Caines A, Arntzen L, Smith JK, St. Clair DA (2001) Marker-assisted introgression of blackmold resistance QTL alleles from wild Lycopersicon cheesmanii to cultivated tomato (L. esculentum) and evaluation of QTL phenotypic effects. Mol Breed 8:217-233
36. Saito K, Miura K, Nagano K, Hayano-Saito Y, Araki H, Kato A (2001) Identification of two closely linked quantitative trait loci for cold tolerance on chromosome 4 of rice and their association with anther length. Theor Appl Genet 103:862-868
37. Sandbrink JM, Colon LT, Wolters P, Stiekema WJ (2000) Two related genotypes of Solanum microdontum carry different segregating alleles for field resistance to Phytophthora infestans. Mol Breed 6:215-225
38. SAS Institute I (1996) The SAS system for Windows. SAS Institute, Cary, N.C.
39. Tanksley SD, Nelson JC (1996) Advanced backcross QTL analysis - a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines. Theor Appl Genet 92:191-203
40. Truco MJ, Randall LB, Bloom AJ, St. Clair DA (2000) Detection of QTLs associated with shoot wilting and root ammonium uptake under chilling temperatures in an interspecific backcross population from Lycopersicon hirsutum x L. hirsutum. Theor Appl Genet 101:1082-1092
41. Utz HF, Melchinger AE, Schon CC (2000) Bias and sampling error of the estimated proportion genotypic variance explained by quantitative trait loci determined from experimental data in maize using cross validation and validation with independent samples. Genetics 154:1839-1849
42. Visker M, Keizer LCP, Van Eck HJ, Jacobsen E, Colon LT, Struik PC (2003) Can the QTL for late blight resistance on potato chromosome 5 be attributed to foliage maturity type? Theor Appl Genet 106:317-325
43. Wastie RL (1991) Breeding for resistance. In: Ingram DS, Williams PH (eds) Advances in plant pathology. Academic Press, London, pp 193-224
44. Wissuwa M, Wegner J, Ae N, Yano M (2002) Substitution mapping of Pup1: a major QTL increasing phosphorus uptake of rice from a phosphorus-deficient soil. Theor Appl Genet 105:890-897
45. Yamamoto T, Kuboki Y, Lin SY, Sasaki T, Yano M (1998) Fine mapping of quantitative trait loci Hd-1, Hd-2 and Hd-3, controlling heading date of rice, as single Mendelian factors. Theor Appl Genet 97:37-44
46. Young ND (1999) A cautiously optimistic vision for marker-assisted breeding. Mol Breed 5:505-510