Structure analysis of the protein transduction domain of human Period1 and its mutant analogs

Journal of Molecular Graphics and Modelling

Volumn 23, Issue 5, 2005, Pages 389-394

  Yang, Xiao Lin ^a   Xie, Jun ^b   Niu, Bo ^b   Hu, Xiao Nian ^a   Gao, Yang ^a   Xiang, Qian ^a   Zhang, Yue Hong ^b   Guo, Yong ^c   Zhang, Zheng Guo ^a  

^a INSTITUTE OF BASIC MEDICAL SCIENCES   (China)

^b SHANXI MEDICAL UNIVERSITY   (China)

^c SANOFI   (France)

Author keywords

Helix; Electrostatic; Human Period1; Hydrophobility; Protein transduction domain

Indexed keywords

ALGORITHMS; AMINO ACIDS; CELLS; ELECTROSTATICS; HYDROPHOBICITY;

HUMAN PERIOD1 (HPER1); POSITIVE CHARGE; PROTEIN TRANSDUCTION DOMAIN (PTD);

PROTEINS;

ALANINE; ARGININE; MUTANT PROTEIN; PER1 PROTEIN; SOLVENT;

ALGORITHM; ALPHA HELIX; ARTICLE; ELECTRIC POTENTIAL; ENERGY; HYDROPHOBICITY; INTERNALIZATION; MATHEMATICAL COMPUTING; MEMBRANE PERMEABILITY; MUTATION; PHYSICAL CHEMISTRY; POISSON DISTRIBUTION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN STRUCTURE; SIMULATION;

AMINO ACID SEQUENCE; ANIMALS; ARGININE; CELL CYCLE PROTEINS; CHO CELLS; CRICETINAE; ELECTROSTATICS; HUMANS; HYDROPHOBICITY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; MUTAGENESIS, SITE-DIRECTED; NUCLEAR PROTEINS; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; THERMODYNAMICS;

EID: 15244349843     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmgm.2004.11.008     Document Type: Article

References (34)

1. M. Green, and P.M. Loewenstein Autonomous functional domains of chemically synthesized human immunodeficiency virus tat trans-activator protein Cell 55 1988 1179 1188
2. A.D. Frankel, and C.O. Pabo Cellular uptake of the tat protein from human immunodeficiency virus Cell 55 1988 1189 1193
3. A. Joliot, C. Pernelle, H. Deagostini-Bazin, and A. Prochiantz Antennapedia homeobox peptide regulates neural morphogenesis Proc. Natl. Acad. Sci. U.S.A. 88 1991 1864 1868
4. G. Elliott, and P. O'Hare Intercellular trafficking and protein delivery by a herpesvirus structural protein Cell 88 1997 223 233
5. Y. Guo, N.L. Cheng, X.X. Wang, Z.Z. Liu, and J. Xie hPer1-NLS: a novel protein transduction domain J. Shanxi Med. Univ. 33 2002 197 198
6. L. Josephson, C.H. Tung, A. Moore, and R. Weissleder High-efficiency intracellular magnetic labeling with novel superparamagnetic-Tat peptide conjugates Bioconjug. Chem. 10 1999 186 191
7. M. Lewin, N. Carlesso, C.H. Tung, X.W. Tang, D. Cory, D.T. Scadden, and R. Weissleder Tat peptide-derivatized magnetic nanoparticles allow in vivo tracking and recovery of progenitor cells Nat. Biotechnol. 18 2000 410 414
8. C.H. Dodd, H.C. Hsu, W.J. Chu, P. Yang, H.G. Zhang, J.D. Mountz Jr., K. Zinn, J. Forder, L. Josephson, R. Weissleder, J.M. Mountz, and J.D. Mountz Normal T-cell response and in vivo magnetic resonance imaging of T cells loaded with HIV transactivator-peptide-derived superparamagnetic nanoparticles J. Immunol. Methods 256 2001 89 105
9. S.R. Schwarze, A. Ho, A. Vocero-Akbani, and S.F. Dowdy In vivo protein transduction: delivery of a biologically active protein into the mouse Science 285 1999 1569 1572
10. D. Derossi, G. Chassaing, and A. Prochiantz Trojan peptides: the penetratin system for intracellular delivery Trends Cell Biol. 8 1998 84 87
11. J.S. Wadia, and S.F. Dowdy Protein transduction technology Curr. Opin. Biotechnol. 13 2002 52 56
12. A. Ho, S.R. Schwarze, S.J. Mermelstein, G. Waksman, and S.F. Dowdy Synthetic protein transduction domains: enhanced transduction potential in vitro and in vivo Cancer Res. 61 2001 474 477
13. D. Derossi, S. Calvet, A. Trembleau, A. Brunissen, G. Chassaing, and A. Prochiantz Cell internalization of the third helix of the Antennapedia homeodomain is receptor-independent J. Biol. Chem. 271 1996 18188 18193
14. A.H. Joliot, A. Triller, M. Volovitch, C. Pernelle, and A. Prochiantz Alpha-2,8-Polysialic acid is the neuronal surface receptor of antennapedia homeobox peptide New Biol. 3 1991 1121 1134
15. J.S. Wadia, R.V. Stan, and S.F. Dowdy Transducible TAT-HA fusogenic peptide enhances escape of TAT-fusion proteins after lipid raft macropinocytosis Nat. Med. 10 2004 310 315
16. J.B. Rothbard, S. Garlington, Q. Lin, T. Kirschberg, E. Kreider, P.L. McGrane, P.A. Wender, and P.A. Khavari Conjugation of arginine oligomers to cyclosporin A facilitates topical delivery and inhibition of inflammation Nat. Med. 6 2000 1253 1257
17. S. Futaki, T. Suzuki, W. Ohashi, T. Yagami, S. Tanaka, K. Ueda, and Y. Sugiura Arginine-rich peptides. An abundant source of membrane-permeable peptides having potential as carriers for intracellular protein delivery J. Biol. Chem. 276 2001 5836 5840
18. G. Drin, M. Mazel, P. Clair, D. Mathieu, M. Kaczorek, and J. Temsamani Physico-chemical requirements for cellular uptake of pAntp peptide. Role of lipid-binding affinity Eur. J. Biochem. 268 2001 1304 1314
19. A. Ziegler, and J. Seelig Interaction of the protein transduction domain of HIV-1 TAT with heparan sulfate: binding mechanism and thermodynamic parameters Biophys. J. 86 2004 254 263
20. C.A. Rohl, and D. Baker De novo determination of protein backbone structure from residual dipolar couplings using Rosetta J. Am. Chem. Soc. 124 2002 2723 2729
21. P.M. Bowers, C.E. Strauss, and D. Baker De novo protein structure determination using sparse NMR data J. Biomol. NMR 18 2000 311 318
22. R. Luthy, J.U. Bowie, and D. Eisenberg Assessment of protein models with three-dimensional profiles Nature 356 1992 83 85
23. B.M. Pettitt, and M. Karplus The potential of mean force surface for the alanine dipeptide in aqueous solution: a theoretical approach Chem. Phys. Lett. 121 1985 194 201
24. A.L. Morris, M.W. MacArthur, E.G. Hutchinson, and J.M. Thornton Stereochemical quality of protein structure coordinates Proteins 12 1992 345 364
25. R.A. Laskowski, M.W. MacArthur, D.S. Moss, and J.M. Thornton PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Cryst. 26 1993 283 291
26. B. Lee, and F.M. Richards The interpretation of protein structures: estimation of static accessibility J. Mol. Biol. 55 1971 379 400
27. D. Murray, S. McLaughlin, and B. Honig The role of electrostatic interactions in the regulation of the membrane association of G protein beta gamma heterodimers J. Biol. Chem. 276 2001 45153 45159
28. J.H. Lakey, M.W. Parker, J.M. Gonzalez-Manas, D. Duche, G. Vriend, D. Baty, and F. Pattus The role of electrostatic charge in the membrane insertion of colicin A. Calculation and mutation Eur. J. Biochem. 220 1994 155 163
29. P. Ruzza, A. Calderan, A. Guiotto, A. Osler, and G. Borin Tat cell-penetrating peptide has the characteristics of a poly(proline) II helix in aqueous solution and in SDS micelles J. Pept. Sci. 10 2004 423 426
30. M. Lindberg, and A. Graslund The position of the cell penetrating peptide penetratin in SDS micelles determined by NMR FEBS Lett. 497 2001 39 44
31. M. Magzoub, L.E. Eriksson, and A. Graslund Comparison of the interaction, positioning, structure induction and membrane perturbation of cell-penetrating peptides and non-translocating variants with phospholipid vesicles Biophys. Chem. 103 2003 271 288
32. A. Scheller, J. Oehlke, B. Wiesner, M. Dathe, E. Krause, M. Beyermann, M. Melzig, and M. Bienert Structural requirements for cellular uptake of alpha-helical amphipathic peptides J. Pept. Sci. 5 1999 185 194
33. J. Fernandez-Carneado, M.J. Kogan, S. Pujals, and E. Giralt Amphipathic peptides and drug delivery Biopolymers 76 2004 196 203
34. J. Oehlke, A. Scheller, B. Wiesner, E. Krause, M. Beyermann, E. Klauschenz, M. Melzig, and M. Bienert Cellular uptake of an alpha-helical amphipathic model peptide with the potential to deliver polar compounds into the cell interior non-endocytically Biochim. Biophys. Acta 1414 1998 127 139