Genetic discovery in Xylella fastidiosa through sequence analysis of selected randomly amplified polymorphic DNAs

Current Microbiology

Volumn 50, Issue 2, 2005, Pages 78-83

  Chen, Jianchi ^a   Civerolo, Edwin L ^a   Jarret, Robert L ^a   Van Sluys, Marie Anne ^b   De Oliveira, Mariana C ^b  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL GENETICS; BACTERIOPHAGE; GENE REARRANGEMENT; GENE SEQUENCE; GENETIC DATABASE; GENOME ANALYSIS; METHODOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT DISEASE; PLASMID; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; SEQUENCE ANALYSIS; XYLELLA FASTIDIOSA;

BACTERIOPHAGES; BASE SEQUENCE; CONJUGATION, GENETIC; DNA, BACTERIAL; EVOLUTION, MOLECULAR; GENE REARRANGEMENT; GENES, BACTERIAL; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PLANT DISEASES; PLASMIDS; PODOVIRIDAE; POLYMORPHISM, SINGLE NUCLEOTIDE; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; XYLELLA;

BACTERIA (MICROORGANISMS); PODOVIRIDAE; PRUNUS DULCIS; VITIS SP.; XYLELLA FASTIDIOSA;

EID: 14944359386     PISSN: 03438651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00284-004-4412-6     Document Type: Article

References (22)

1. R Albibi J Chen O Lamikanra D Banks RL Jarret BJ Smith 1998 RAPD fingerprinting Xylella fastidiosa Pierce's disease strains isolated from a vineyard in North Florida FEMS Microbiol Lett 165 347 352
2. D Banks R Albibi J Chen O Lamikanra RL Jarret BJ Smith 1999 Specific detection of Xylella fastidiosa Pierce's disease strains Curr Microbiol 39 85 88
3. A Bhattacharyya S Stilwagen G Reznik H Feil WS Feil I Anderson A Bernal M D'Souza N Ivanova V Kapatral N Larsen T Los A Lykidis E Jr Selkov Jr TL Walunas A Purcell RA Edwards T Hawkins R Haselkorn R Overbeek NC Kyrpides PF Predki 2002 Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights Genome Res 12 1556 63
4. J Chen CJ Chang RL Jarret 1992 Plasmids from Xylella fastidiosa strains Can J Microbiol 38 993 995
5. J Chen CJ Chang RL Jarret N Gawel 1992 Genetic variation among Xylella fastidiosa strains Phytopathology 82 973 977
6. J Chen O Lamikanra CJ Chang DL Hopkins 1995 Randomly amplified polymorphic DNA analysis of Xylella fastidiosa Pierce's disease and oak leaf scorch pathotypes Appl Environ Microbiol 61 1688 1690
7. J Chen D Banks RL Jarret CJ Chang BJ Smith 2000 Use of 16S rDNA sequences as signature characters to identify Xylella fastidiosa Curr Microbiol 40 29 33
8. J Chen R Jarret X Qin JS Hartung D Banks CJ Chang DL Hopkins 2000 16S rDNA analysis of Xylella fastidiosa strains Syst Appl Microbiol 23 349 354
9. M Hendson AH Purcell D Chen C Smart M Guilhabert B Kirkpatrick 2001 Genetic diversity of Pierce's disease strains and other pathotypes of Xylella fastidiosa Appl Environ Microbiol 67 895 903
10. BL Hill AH Purcell 1995 Acquisition and retention of Xylella fastidiosa by an efficient vector, Graphocephala atropunctata Phytopathology 85 209 212
11. DL Hopkins 1989 Xylella fastidiosa: Xylem-limited bacterial pathogen of plants Annu Rev Phytopathol 27 271 290
12. D Hopkins 2001 Xylella fastidiosa NW Schaad JB Jones W Chun Laboratory guide for identification of plant pathogenic bacteria APS Press St. Paul, MN 201 213
13. MV Marques AM da Silva SL Gomes 2001 Genetic organization of plasmid pXF51 from the plant pathogen Xylella fastidiosa Plasmid 45 184 199
14. LR Nunes YB Rosato NH Muto GM Yanai VS da Silva DB Leite ER Goncalves AA de Souza HD Coletta-Filho MA Machado SA Lopes RC de Oliveira 2003 Microarray analyses of Xylella fastidiosa provide evidence of coordinated transcription control of laterally transferred elements Genome Res 13 570 578
15. MR Pooler JS Hartung 1995 Genetic relationships among strains of Xylella fastidiosa from RAPD-PCR data Curr Microbiol 31 134 137
16. MR Pooler JS Hartung 1995 Specific PCR detection and identification of Xylella fastidiosa strains causing citrus variegated chlorosis Curr Microbiol 31 377 381
17. MR Pooler JS Hartung RG Fenton 1997 Sequence analysis of a 1296-nucleotide plasmid from Xylella fastidiosa FEMS Microbiol Lett 155 217 222
18. YB Rosato JR Neto VS Miranda EF Carlos GP Manfio 1998 Diversity of a Xylella fastidiosa population isolated from Citrus sinensis affected by citrus variegated chlorosis in Brazil Syst Appl Microbiol 21 593 598
19. AJG Simpson FC Reinach P Arruda 2000 The genome sequence of the plant pathogen Xylella fastidiosa Nature 406 151 157
20. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
21. MA Van Sluys MC de Oliveira CB Monteiro-Vitorello 2003 Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa J Bacteriol 185 1018 1026
22. KP Williams 2002 Survey and summary: Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamilies Nucleic Acids Res 30 866 875