Isolation and characterization of phenanthrene-degrading Sphingomonas paucimobilis strain ZX4

Biodegradation

Volumn 16, Issue 5, 2005, Pages 393-402

  Xia, Ying ^a,b   Min, Hang ^a   Rao, Gang ^c   Lv, Zhen Mei ^a   Liu, Ji ^a   Ye, Yang Fang ^a   Duan, Xue Jun ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^c PATENT EXAMINATION COOPERATION CENTER OF THE PATENT OFFICE   (China)

Author keywords

16S rDNA; meta cleavage operon genes; Phenanthrene degradation; Phylogenetic analysis

Indexed keywords

ALCOHOLS; BIOASSAY; CELLS; DNA; ENZYMES; FATTY ACIDS; STRAIN;

GENE ENCODING; PHENANTHRENE-DEGRADING BACTERIUM STRAIN; RDNA SEQUENCE; SPHINGOMONAS PAUCIMOBILIS;

BACTERIA;

AROMATIC COMPOUND; CATECHOL; CATECHOL 2,3 DIOXYGENASE; FLUORENE; GLUTATHIONE TRANSFERASE; NAPHTHALENE; OIL; PHENANTHRENE; RIBOSOME DNA; SALICYLIC ACID;

BIODEGRADATION; OIL POLLUTION; SOIL POLLUTION;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA SEQUENCE; LIPID COMPOSITION; MICROBIAL DEGRADATION; NONHUMAN; OPERON; PHYLOGENETIC TREE; SOIL POLLUTION; SPHINGOMONAS PAUCIMOBILIS;

AMINO ACID SEQUENCE; BASE COMPOSITION; BASE SEQUENCE; BIODEGRADATION, ENVIRONMENTAL; CATECHOL 2,3-DIOXYGENASE; DIOXYGENASES; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, BACTERIAL; GLUTATHIONE TRANSFERASE; MOLECULAR SEQUENCE DATA; OPERON; PHENANTHRENES; PHYLOGENY; PROTEINS; SOIL MICROBIOLOGY; SOIL POLLUTANTS; SPHINGOMONAS;

BACTERIA (MICROORGANISMS); SPHINGOMONAS; SPHINGOMONAS PAUCIMOBILIS;

EID: 14944349284     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-004-2412-7     Document Type: Article

References (27)

1. NV Balashova IA Kosheleva NP Golovchenko AM Boronin 1999 Phenanthrene metabolism by Pseudomonas and Burkholderia strains Process. Biochem. 35 291 296
2. NV Balashova A Stolz HJ Knackmuss IA Kosheleva AV Naumov AM Boronin 2001 Purification and characterization of a salicylate hydroxylase involved in 1-hydroxy-2 -naphthoic acid hydroxylation from the naphthalene and phenanthrene-degrading bacterial strain Pseudomonas putida BS202-P1 Biodegradation 12 179 188
3. CE Cerniglia 1992 Biodegradation of polycyclic aromatic hydrocarbons Biodegradation 3 351 368
4. F Dagher E Deziel P Lirette G Paquette J-G Bisaillon R Villemur 1997 Comparative study of five polycyclic aromatic hydrocarbon degrading bacterial strains isolated from contaminated soils Can. J. Microbiol. 43 368 377
5. D Dean-Ross J Moody CE Cerniglia 2002 Utilization of mixtures of polycyclic aromatic hydrocarbons by bacteria isolated from contaminated sediment FEMS. Microbiol. Ecol. 41 1 7
6. E Diaz KN Timmis 1995 Identification of functional residues in a 2-hydroxymuconic semialdehyde hydrolase J. boil. chem. 270 11 6403 6411
7. HP Doddamani HZ Ninnekar 2000 Biodegradation of phenanthrene by a Bacillus species Curr. Microbiol. 41 11 14
8. XZ Dong MY Cai 2001 Manual of General Bacteria Systemic Identification Science Press Beijing 180 182
9. K Furukawa T Miyazaki 1986 Cloning of a gene cluster encoding biphenyl and chlorobiphenyl degradation in Pseudomonas pseudoalcaligenes J. Bacteriol. 166 2 392 398
10. AK Goyal GJ Zylstra 1996 Molecualr cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39 Appl. Environ. Microbiol. 62 1 230 236
11. S Harayama 1997 Polycyclic aromatic hydrocarbon bioremediation design Curr. Opin. Biotechnol. 8 268 273
12. E Kim GJ Zylstra 1995 Molecular and biochemical characterization of two meta-cleavage dioxygenases involved in biphenyl and m-xylene degradation by Beijerinckia sp strain B1. J. Bacteriol. 177 11 3095 3103
13. AL Laurie G Lloyd-Jones 1999a The phn genes of Burkholderia sp strain RP007 constitute a divergent genes cluster for polycylic aromatic hydrocarbon catabolism. J. bacteriol. 181 2 531 540
14. AD Laurie G Lloyd-Jones 1999b Conserved and hybrid meta-cleavage operons from PAH-degrading Burkholeria RP007 Biochem. Biophy. Res. Comm. 262 308 314
15. G Lloyd-Jones PC Lau 1997 Glutathione S-transferase-encoding gene as a potential probe for environmental bacteria isolates capable of degrading polycyclic aromatic hydrocarbons Appl. Environ. Microbiol 63 8 3286 3290
16. E Masai S Shinohara H Hara S Nishikawa Y Katayama M Fukuda 1999 Genetic and biochemical characterization of a 2-pyrone-4, 6-dicarboxylic acid hydrolase involved in the protocatechuate 4, 5-cleavage pathway of Sphingomonas paucimobilis SYK-6 J. Bacteriol. 181 1 55 62
17. S Meyer R Moser A Neef U Stahl P Kampfer 1999 Differential detection of key enzymes of polyaromatic-hydrocarbon-degrading bacteria using PCR and gene probes Microbiology 145 1731 1741
18. K Miyauchi SK Suh Y Nagata M Takagi 1998 Cloning and sequencing of a 2, 5-dichlorohydroquinone reductive dehalogenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane by Sphingomonas paucimobilis J. Bacteriol. 180 6 1354 1359
19. R Nalin P Simonies TM Vogel P Normand 1999 Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium Int. J. Syst. Bacteriol. 49 1 19 23
20. LJ Nohynek EL Nurmiaho-Lassila EL Suhonen HJ Busse M Mohammadi J Hantula F Rainey MS Salkinoja-Salonen 1996 Description of chlorophenol-degrading Pseudomonas sp. strains KF1T, KF3, and NKF1 as a new species the genus of Sphingomonas, Sphingomonas subarctica sp. nov Int. J. Syst. Bacteriol. 46 4 1042 1055
21. O Pinyakong H Habe T Omori 2003 The unique aromatic catabolic genes in Sphingomonads degrading polycyclic aromatic hydrocarbons (PAHs) J. Gen. Appl. Microbiol. 49 1 1 19
22. A Saito T Iwabuchi SA Harayama 2000 novel phenanthrene dioxygenase from Nocardioides sp. strain KP7: Expression in Escherichia coil J. bacterial. 182 8 2134 2141
23. J Sambrook EF Fritsch T Maniatis 1990 Molecular cloning: A laboratory manual Cold Spring Harbour Laboratory press New York
24. HJ Shin SJ Kim YC Kim 1997 Sequence analysis of the phnD gene encoding 2-hydroxymuconic semialdehyde hydrolase in Pseudomonas sp. strain DJ77 Biochem. Biophy. Res. Comm. 232 288 291
25. L Tian p Ma JJ Zhong 2002 Kinetics and key enzymes activities of phenanthrene degradation by Pseudomonas mendocina Process. Biochem. 37 1431 1437
26. S Vuilleumier M Pagni 2002 The elusive roles of bacterial glutathione S-transferases: new lesson from genomes Appl. Microbiol. Biotechnol. 58 138 146
27. E Yabuuchi I Yano H Oyaizu Y Hashimoto T Ezaki H Yamamoto 1990 Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas Microbiol. Immunol. 34 99 119