Conformation-dependent design of protein-like copolymers: Molecular-dynamic modeling

Polymer Science - Series A

Volumn 47, Issue 1, 2005, Pages 66-73

  Berezkin, A V ^a   Khalatur, P G ^a   Khokhlov, A R ^b  

^a TVER STATE UNIVERSITY   (Russian Federation)

^b MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

COPOLYMER; MONOMER; PROTEIN;

ARTICLE; CHEMICAL COMPOSITION; CHEMICAL REACTION KINETICS; CONFORMATION; HYDROPHOBICITY; MATHEMATICAL ANALYSIS; MOLECULAR DYNAMICS; MOLECULAR MODEL; POLYMERIZATION;

EID: 14844323665     PISSN: 0965545X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (39)

1. G. H. Fredrickson and F. S. Bates, Annu. Rev. Mater. Sci. 26, 501 (1996).
2. F. S. Bates and G. H. Fredrickson, Annu. Rev. Phys. Chem. 41, 525 (1996).
3. K. A. Davis and K. Matyjaszewski, Statistical, Gradient, Block and Graft Copolymers by Controlled/Living Radical Polymerizations (Springer, Berlin, 2002).
4. A. R. Khokhlov, P. G. Khalatur, V. A. Ivanov, et al., SIMU Newslett. 4, 79 (2002).
5. E. I. Shakhnovich and A. M. Gutin, Proc. Natl. Acad. Sci. USA 90, 7195 (1993).
6. E. I. Shakhnovich and A. M. Gutin, Protein Eng. 6, 793 (1993).
7. V. S. Pandle, A. Yu. Grosberg, and T. Tanaka, Proc. Natl. Acad. Sci. U.S.A. 91, 12972 (1994).
8. M. P. Morrissey and E. I. Shakhnovich, Folding Des. 1, 391 (1996).
9. V. S. Pandle, A. Yu. Grosberg, and T. Tanaka, Rev. Mod. Phys. 72, 259 (2000).
10. A. Irbäck, C. Peterson, F. Potthast, and E. Sandelin, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 58, R5249 (1998).
11. A. Irbäck, C. Peterson, F. Potthast, and E. Sandelin, Structure 7, 347 (1999).
12. Y. Iba, K. Tokida, and M. Kikuchi, J. Phys. Soc. Jpn. 67, 3985 (1998).
13. I. Abkevich, A. M. Gutin, and E. I. Shakhnovich, Proc. Natl. Acad. Sci. USA 93, 839 (1996).
14. R. A. Broglia, G. Tiana, S. Pasquali, et al., Proc. Natl. Acad. Sci. USA 95, 12930 (1998).
15. P. Gupta, C. K. Hall, and A. C. Voegler, Protein Sci. 7, 2642 (1998).
16. S. Israil, R. Schwartz, and J. King, J. Comput. Biol. 6, 143 (1999).
17. G. Giugliarelli, C. Micheletti, J. R. Banavar, and A. Maritan, J. Chem. Phys. 113, 5072 (2000).
18. A. R. Khokhlov and P. G. Khalatur, Physica A 249, 253 (1998).
19. A. R. Khokhlov and P. G. Khalatur, Phys. Rev. Lett. 82, 3456 (1999).
20. A. V. Chertovich, V. A. Ivanov, A. A. Lazutin, and A. R. Khokhlov, Macromol. Symp. 160, 41 (2000).
21. E. N. Govorun, V. A. Ivanov, A. R. Khokhlov, et al., Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 64, 040903 (2001).
22. Yu. A. Kriksin, P. G. Khalatur, and A. R. Khokhlov, Macromol. Theory Simul. 11, 213 (2002).
23. J. M. P. Van der Oever, F. A. M. Leemakers, G. J. Fleer, et al., Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 65, 041708 (2002).
24. A. V. Chertovich, V. A. Ivanov, B. G. Zavin, and A. R. Khokhlov, Macromol. Theory Simul. 11, 751 (2002).
25. L. V. Zherenkova, S. K. Talitskikh, P. G. Khalatur, and A. R. Khokhlov, Dokl. Akad. Nauk 382, 358 (2002).
26. A. R. Khokhlov, P. G. Khalatur, V. A. Ivanov, and A. V. Chertovich, Conformation-Dependent Sequences Design: A Review of the Method and Recent Theoretical and Computer Simulation Results (Kluwer Academic, Dordrecht, 2002), p. 408.
27. P. G. Khalatur, V. V. Novikov, and A. R. Khokhlov, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 67, 051901 (2003).
28. S. B. Kuchanov and A. R. Khokhlov, J. Chem. Phys. 118, 4672 (2003).
29. B. G. Zavin, I. A. Ronova, S. G. Larin, et al., in Proceedings of World Polymer Congress IUPAC MACRO, Warshaw, 2000, p.44.
30. J. Virtanen, C. Baron, and H. Tenhu, Macromolecules 33, 336 (2000).
31. J. Virtanen and H. Tenhu, Macromolecules 33, 5970 (2000).
32. J. Virtanen, H. Lemmetynen, and H. Tenhu, Polymer 42, 9487 (2001).
33. V. I. Lozinskii, I. A. Simenel, E. A. Kurskaya, et al., Dokl. Akad. Nauk 35, 637 (2000).
34. V. I. Lozinsky, I. A. Simenel, V. K. Kulakova, et al., Macromolecules 36, 7308 (2003).
35. M.-H. Siu, G. Zhang, and Ch. Wu, Macromolecules 35, 2723 (2002).
36. M.-H. Siu, Ch. He, and Ch. Wu, Macromolecules 36, 6588 (2003).
37. A. V. Berezkin, P. G. Khalatur, and A. R. Khokhlov, J. Chem. Phys. 118, 8049 (2003).
38. M. P. Allen and D. J. Tildesley, Computer Simulation of Liquids (Clarendon, Oxford, 1990).
39. W. Feller, An Introduction to Probability Theory and Its Applications (Wiley, New York, 1970).