Characterization of the product radical structure in the Co II-product radical pair state of coenzyme B12-dependent ethanolamine deaminase by using three-pulse 2H ESEEM spectroscopy

Biochemistry

Volumn 44, Issue 9, 2005, Pages 3184-3193

  Warncke, Kurt ^a  

^a EMORY UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOLS; AMINES; BIOCHEMISTRY; BONDING; CATALYSIS; COMPUTER SIMULATION; MATHEMATICAL MODELS; MOLECULAR STRUCTURE; SPECTROSCOPIC ANALYSIS;

CATALYTIC CYCLE; ELECTRON SPIN-ECHO ENVELOPE MODULATION (ESEEM) SPECTROSCOPY; ETHANOLAMINE DEAMINASE; MICROWAVE FREQUENCIES;

COENZYMES;

COBAMAMIDE; DEOXYADENOSINE DERIVATIVE; ETHANOLAMINE AMMONIA LYASE; ETHANOLAMINE DERIVATIVE; METHYL GROUP;

ARTICLE; CATALYSIS; CHEMICAL STRUCTURE; ELECTRON SPIN RESONANCE; ENZYME ACTIVITY; ISOMERIZATION; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; REACTION ANALYSIS; SALMONELLA TYPHIMURIUM; SIMULATION; SOLID STATE; SPECTROSCOPY; STEADY STATE;

BINDING SITES; COBALT; COBAMIDES; COMPUTER SIMULATION; ELECTRON SPIN RESONANCE SPECTROSCOPY; ETHANOLAMINE AMMONIA-LYASE; ETHANOLAMINES; FOURIER ANALYSIS; FREE RADICALS; HYDROGEN BONDING; MODELS, CHEMICAL; PROTEIN CONFORMATION; SALMONELLA TYPHIMURIUM; SUBSTRATE SPECIFICITY; THERMODYNAMICS;

EID: 14644444206     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi048196t     Document Type: Article

References (66)

1. Bandarian, V., and Reed, G. H. (1999) in Chemistry and Biochemistry of B12 (Banerjee, R., Ed.) pp 811-833, John Wiley and Sons, New York.
2. Frey, P. (1990) Chem. Rev. 90, 1343-1357.
3. Stubbe, J., and van der Donk, W. (1998) Chem. Rev. 98, 705-762.
4. Banerjee, R. (1999) Chemistry and Biochemistry of B12, John Wiley and Sons, New York.
5. Banerjee, R., and Ragsdale, S. W. (2003) Annu. Rev. Biochem. 72, 209-247.
6. Buckel, W., and Golding, B. T. (1996) Chem. Soc. Rev. 25, 329-338.
7. Frey, P. (2001) Annu. Rev. Biochem. 70, 121-148.
8. Toraya, T. (2003) Chem. Rev. 103, 2095-2127.
9. Lobrutto, R., Bandarian, V., Magnusson, O. T., Chen, X., Schramm, V. L., and Reed, G. H. (2001) Biochemistry 40, 9-14.
10. Warncke, K., and Utada, A. S. (2001) J. Am. Chem. Soc. 123, 8564-8572.
11. Babior, B. M., Moss, T. H., Orme-Johnson, W. H., and Beinert, H. (1974) J. Biol. Chem. 249, 4537-4544.
12. Bandarian, V., and Reed, G. H. (2002) Biochemistry 41, 8580-8588.
13. Warncke, K., Schmidt, J. C., and Ke, S.-C. (1999) J. Am. Chem. Soc. 121, 10522-10528.
14. Licht, S. S., Lawrence, C. C., and Stubbe, J. (1999) J. Am. Chem. Soc. 121, 7463-7468.
15. Gerfen, G. J. (1999) in Chemistry and Biochemistry of B12 (Banerjee, R., Ed.) pp 165-195, John Wiley and Sons, New York.
16. Boas, J. F., Hicks, P. R., Pilbrow, J. R., and Smith, T. D. (1978) J. Chem. Soc., Faraday Trans. 2 74, 417-431.
17. Canfield, J. M., and Warncke, K. (2002) J. Phys. Chem. B 106, 8831-8841.
18. Ke, S.-C. (2003) Biochim. Biophys. Acta 1620, 267-272.
19. Warncke, K., and Canfield, J. M. (2004) J. Am. Chem. Soc. 126, 5930-5931.
20. Dikanov, S. A., and Tsvetkov, Y. D. (1992) Electron Spin Echo Envelope Modulation (ESEEM) Spectroscopy, CRC Press, Boca Raton, FL.
21. Deligiannakis, Y., Louloudi, M., and Hadjiliadis, N. (2000) Coord. Chem. Rev. 204, 1-112.
22. Schweiger, A., and Jeschke, G. (2001) Principles of pulse electron paramagnetic resonance, Oxford University Press, New York.
23. Bandarian, V., and Reed, G. H. (2000) Biochemistry 39, 12069-12075.
24. Wertz, J. E., and Bolton, J. R. (1986) Electron Spin Resonance, Chapman and Hall, New York.
25. Faust, L. P., Connor, J. A., Roof, D. M., Hoch, J. A., and Babior, B. M. (1990) J. Biol Chem. 265, 12462-12466.
26. Faust, L. P., and Babior, B. M. (1992) Arch. Biochem. Biophys. 294, 50-54.
27. Harkins, T., and Grissom, C. B. (1995) J. Am. Chem. Soc. 117, 566-567.
28. Kaplan, B. H., and Stadtman, E. R. (1968) J. Biol. Chem. 243, 1787-1793.
29. Hollaway, M. R., Johnson, A. W., Lappert, M. F., and Wallis, O. C. (1980) Eur. J. Biochem. 111, 177-188.
30. Bandarian, V., and Reed, G. H. (1999) Biochemistry 38, 12394-12402.
31. Britt, R. D., and Klein, M. P. (1987) J. Magn. Reson. 74, 535-540.
32. Lin, C. P., Bowman, M. K., and Norris, J. R. (1985) J. Magn. Reson. 65, 396-374.
33. Fauth, J.-M., Schweiger, A., Braunschweiler, L., Forrer, J., and Ernst, R. R. (1986) J. Magn. Reson. 66, 74-85.
34. Fauth, J.-M., Schweiger, A., and Ernst, R. R. (1989) J. Magn. Reson. 81, 262-274.
35. Hyde, J. S., Rist, G. H., and Eriksson, L. E. G. (1968) J. Phys. Chem. 72, 4269.
36. Mims, W. B. (1972) Phys. Rev. B 5, 2409-2419.
37. Mims, W. B., and Peisach, J. (1989) in Advanced EPR: Applications in Biology and Chemistry (Hoff, A. J., Ed.) pp 1-57, Elsevier, New York.
38. Mims, W. B. (1984) J. Magn. Reson. 59, 291-306.
39. Ke, S.-C., Torrent, M., Museav, D. G., Morokuma, K., and Warncke, K. (1999) Biochemistry 38, 12681-12689.
40. Ke, S.-C., and Warncke, K. (1999) J. Am. Chem. Soc. 121, 9922-9927.
41. Abragam, A., and Bleaney, B. (1970) Electron Paramagnetic Resonance of Transition Ions, Clarendon Press, Oxford.
42. Mims, W. B. (1972) Phys. Rev. B 6, 3543-3546.
43. Hellwege, K.-H., and Hellwege, A. M. (1988) Landolt-Bornstein Numerical Data and Functional Relationships in Science and Technology, Vol. a, Springer-Verlag, New York.
44. Dikanov, S. A., Shubin, A. A., and Parmon, V. N. (1981) J. Magn. Reson. 42, 474-487.
45. Mims, W. B., Davis, J. L., and Peisach, J. (1990) J. Magn. Reson. 86, 273-292.
46. Warncke, K., and McCracken, J. (1994) J. Chem. Phys. 101, 1832-1841.
47. Warncke, K., and McCracken, J. (1995) J. Chem. Phys. 103, 6829-6840.
48. Astashkin, A. V., Dikanov, S. A., and Tsvetkov, Y. D. (1987) Chem. Phys. Lett. 136, 204-208.
49. Babior, B. M. (1982) in B12 (Dolphin, D., Ed.) pp 263-387, Wiley, New York.
50. Pilbrow, J. R. (1982) in B12 (Dolphin, D., Ed.) pp 431-462, Wiley, New York.
51. Rowan, L. G., Hahn, E. L., and Mims, W. B. (1965) Phys. Rev. 137, A61-A71.
52. Mims, W. B., and Peisach, J. (1978) J. Chem. Phys. 69, 4921-4930.
53. Flanagan, H. L., and Singel, D. J. (1987) J. Chem. Phys. 87, 5606-5616.
54. Bandarian, V., Poyner, R. R., and Reed, G. H. (1999) Biochemistry 38, 12403-12407.
55. Heller, C., and McConnell, H. M. (1960) J. Chem. Phys. 32, 1535-1539.
56. Fessenden, R. W., and Schuler, R. H. (1963) J. Chem. Phys. 39, 2147.
57. Retey, J., Suckling, C. J., Arigoni, D., and Babior, B. M. (1974) J. Biol. Chem. 249, 6359-6360.
58. Diziol, P., Haas, H., Retey, J., Graves, S. W., and Babior, B. M. (1980) Eur. J. Biochem. 106, 211-224.
59. Gani, D., Wallis, C. O., and Young, D. W. (1983) Eur. J. Biochem. 136, 303-311.
60. Yan, S.-J., McKinnie, B. G., Abacherii, C., Hill, R. K., and Babior, B. M. (1984) J. Am. Chem. Soc. 106, 2961-2964.
61. Wetmore, S. D., Smith, D. M., Bennet, J. T., and Radom, L. (2002) J. Am. Chem. Soc. 124, 14054-14065.
62. Carty, T. J., Babior, B. M., and Abeles, R. H. (1971) J. Biol. Chem. 246, 6313-6317.
63. Carty, T. J., Babior, B. M., and Abeles, R. H. (1974) J. Biol. Chem. 249, 1683-1688.
64. Graves, S. W., Fox, J. A., and Babior, B. M. (1980) Biochemistry 19, 3630-3633.
65. Babior, B. M. (1969) J. Biol. Chem. 244, 449-456.
66. Weisblat, D. A., and Babior, B. M. (1971) J. Biol. Chem. 246, 6064-6071.