A probabilistic framework for region-specific remodeling of dendrites in three-dimensional neuronal reconstructions

Neural Computation

Volumn 17, Issue 1, 2005, Pages 75-96

  Narayanan, Rishikesh ^a   Narayan, Anusha ^a   Chattarji, Sumantra ^a  

^a TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; BIOLOGICAL MODEL; CELL SHAPE; CYTOLOGY; DENDRITE; HIPPOCAMPUS; NERVE CELL NETWORK; NERVE CELL PLASTICITY; PATHOLOGY; PHYSIOLOGY; PYRAMIDAL NERVE CELL; RAT; STATISTICAL MODEL; ULTRASTRUCTURE;

ALGORITHMS; ANIMALS; CELL SHAPE; DENDRITES; HIPPOCAMPUS; MODELS, NEUROLOGICAL; MODELS, STATISTICAL; NERVE NET; NEURONAL PLASTICITY; PYRAMIDAL CELLS; RATS;

EID: 14544303656     PISSN: 08997667     EISSN: None     Source Type: Journal    
DOI: 10.1162/0899766052530811     Document Type: Article

References (44)

1. Anderton, B. H., Callahan, L., Coleman, P., Davies, P., Flood, D., Jicha, G. A., Ohm, T., & Weaver, C. (1998). Dendritic changes in Alzheimer's disease and factors that may underlie these changes. Progress in Neurobiology, 55, 595-609.
2. Ascoli, G., & Krichmar, J. L. (2000). L-Neuron: A modeling tool for the efficient generation and parsimonious description of dendritic morphology. Neurocomputing, 32-33, 1003-1011.
3. Ascoli, G., Krichmar, J., Scorcioni, R., Nasuto, S., & Senft, S. (2001). Computer generation and quantitative morphometric analysis of virtual neurons. Anatomy and Embryology, 204, 283-301.
4. Berzhanskaya, J., Urban, N. N., & Barrionuevo, G. (1998). Electrophysiological and pharmacological characterization of the direct perforant path input to hippocampal area CA3. Journal of Neurophysiology, 79, 2111-2118.
5. Bothwell, S., Meredith, G. E., Phillips, J., Staunton, H., Doherty, C., Grigorenko, E., Glazier, S., Deadwyler, S., O'Donovan, C. A., & Farrell, M. (2001). Neuronal hypertrophy in the neocortex of patients with temporal lobe epilepsy. Journal of Neuroscience, 21, 4789-4800.
6. Brizzee, K. R. (1987). Neurons numbers and dendritic extent in normal aging and Alzheimer's disease. Neurobiology of Aging, 8, 579-580.
7. Cannon, R., Turner, D., Pyapali, G., & Wheal, H. (1998). An on-line archive of reconstructed hippocampal neurons. Journal of Neuroscience Methods, 84, 49-54.
8. Cline, H. T. (2001). Dendritic arbor development and synaptogenesis. Current Opinion in Neurobiology, 11, 118-126.
9. Cossart, R., Epsztein, J., Tyzio, R., Becq, H., Hirsch, J., Ben-Ari, Y., & Crepel, V. (2002). Quantal release of glutamate generates pure kainate and mixed AMPA/kainate EPSCs in hippocampal neurons. Neuron, 35(1), 147-159.
10. Duan, H., Wearne, S. L., Rocher, A. B., Macedo, A., Morrison, J. H., & Hof, P. R. (2003). Age-related dendritic and spine changes in corticocortically projecting neurons in macaque monkeys. Cerebral Cortex, 13, 950-961.
11. Frick, A., Magee, J., & Johnston, D. (2004). LTP is accompanied by an enhanced local excitability of pyramidal neuron dendrites. Nature Neuroscience, 7, 126-135.
12. Geula, C. (1998). Abnormalities of neural circuitry in Alzheimer's disease: Hippocampus and cortical cholinergic innervation. Neurology, 51, S18-S29.
13. Häusser, M., & Mel, B. (2003). Dendrites: Bug or feature? Current Opinion in Neurobiology, 13, 372-383.
14. Johnston, D., & Amaral, D. G. (1997). Hippocampus. In G. Shepherd (Ed.), Synaptic organization of the brain (4th ed.). New York: Oxford University Press.
15. Johnston, D., Magee, J. C., Colbert, C. M., & Cristie, B. R. (1996). Active properties of neuronal dendrites. Annual Review of Neuroscience, 19, 165-186.
16. Jones, T. A., & Schauert, T. (1994). Use-dependent growth of pyramidal neurons after neocortical damage. Journal of Neuroscience, 14, 2140-2152.
17. Kaufmann, W. E., & Moser, H. W. (2000). Dendritic anomalies in disorders associated with mental retardation. Cerebral Cortex, 10, 981-991.
18. Keyvani, K., & Schauert, T. (2002). Plasticity-associated molecular and structural events in the injured brain. Journal of Neuropathology and Experimental Neurology, 61, 831-840.
19. Knuth, D. E. (1997). The art of computer programming, Vol. 2: Seminumerical algorithms (3rd ed.). Reading, MA: Addison-Wesley.
20. Krichmar, J. L., Nasuto, S. J., Scorcioni, R., Washington, S. D., & Ascoli, G. A. (2002). Effects of dendritic morphology on CA3 pyramidal cell electrophysiology: A simulation study. Brain Research, 941, 11-28.
21. Magee, J., Hoffman, D., Colbert, C., & Johnston, D. (1998). Electrical and calcium signaling in dendrites of hippocampal pyramidal neurons. Annual Review of Physiology, 60, 327-346.
22. Mainen, Z., & Sejnowski, T. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature, 382, 363-366.
23. Marc, R. E., Jones, B. W., Watt, C. B., & Strettoi, E. (2003). Neural remodeling in retinal degeneration. Progress in Retinal and Eye Research, 22, 607-655.
24. Marsaglia, G. (1965). Ratios of normal variables and ratios of sums of uniform variables. American Statistical Association Journal, 60, 193-204.
25. McEwen, B. (1999). Stress and hippocampal plasticity. Annual Review of Neuroscience, 22, 105-122.
26. Migliore, M., & Shepherd, G. M. (2002). Emerging rules for the distributions of active dendritic conductances. Nature Reviews Neuroscience, 3, 362-370.
27. Popov, V. I., Bocharova, L. S., & Bragin, A. G. (1992). Repeated changes of dendritic morphology in the hippocampus of ground squirrels in the course of hibernation. Neuroscience, 48, 45-51.
28. Pyapali, G. K., & Turner, D. A. (1996). Increased dendritic extent in hippocampal CA1 neurons from aged F344 rats. Neurobiology of Aging, 17, 601-611.
29. Rail, W. (1977). Core conductor theory and cable properties of neurons. In E. R. Kandel (Ed.), Handbook of physiology (Sec. 1, Vol. 1, pp. 39-97). Bethesda, MD: American Physiological Society.
30. Ramakers, G. J. (2002). Rho proteins, mental retardation and the cellular basis of cognition. Trends in Neuroscience, 25, 191-199.
31. Regehr, W. G., & Tank, D. W. (1994). Dendritic calcium dynamics. Current Opinion in Neurobiology, 4, 373-382.
32. Segev, I., & London, M. (2000). Untangling dendrites with quantitative models. Science, 290, 744-750.
33. Sholl, D. A. (1953). Dendritic organization in the neurons of the visual and motor cortices of the cat. Journal of Anatomy, 87, 387-406.
34. Stuart, G., Spruston, N., & Häusser, M. (Eds.). (1999). Dendrites. New York: Oxford University Press.
35. Traub, R. D., Jefferys, J. G. R., & Whittington, M. A. (1999). Fast oscillations in cortical circuits. Cambridge, MA: MIT Press.
36. van Ooyen, A., Duijnhouwer, J., Remme, M. W., & van Pelt, J. (2002). The effect of dendritic topology on firing patterns in model neurons. Network: Computation in Neural Systems, 13, 311-325.
37. van Ooyen, A., Willshaw, D. J., & Ramakers, G. J. A. (2000). Influence of dendritic morphology on axonal competition. Neurocomputing, 32-33, 255-260.
38. van Pelt, J. (1997). Effect of pruning on dendritic tree topology. Journal of Theoretical Biology, 186, 17-32.
39. van Pelt, J., Dityatev, A. E., & Uylings, H. B. M. (1997). Natural variability in the number of dendritic segments: Model-based inferences about branching during neurite outgrowth. Journal of Comparative Neurology, 387, 325-340.
40. Vetter, P., Roth, A., & Häusser, M. (2001). Propagation of action potentials in dendrites depends on dendritic morphology. Journal of Neurophysiology, 85, 926-937.
41. Vyas, A., Mitra, R., Rao, B. S. S., & Chattarji, S. (2002). Chronic stress induces contrasting patterns of dendritic remodeling in hippocampal and amygdaloid neurons. Journal of Neuroscience, 22, 6810-6818.
42. Wang, Z., Xu, N. L., Wu, C. R., Duan, S., & Poo, M. M. (2003). Bidirectional changes in spatial dendritic integration accompanying long-term synaptic modifications. Neuron, 37, 463-472.
43. Watanabe, Y., Gould, E., & McEwen, B. S. (1992). Stress induces atrophy of apical dendrites of hippocampal CA3 pyramidal neurons. Brain Research, 588(2), 341-345.
44. Wong, R. O. L., & Ghosh, A. (2002). Activity-dependent regulation of dendritic growth and patterning. Nature Reviews Neuroscience, 3, 803-812.