Server-based approach to web visualization of integrated three-dimensional brain imaging data

Journal of the American Medical Informatics Association

Volumn 12, Issue 2, 2005, Pages 140-151

  Poliakov, Andrew V ^a,d   Albright, Evan ^a   Hinshaw, Kevin P ^a   Corina, David P ^b   Ojemann, George ^c   Martin, Richard F ^a   Brinkley, James F ^a  

^a Department of Biological Structure   (United States)

^b Department of Psychology ^*  (United States)

^c UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN MAPPING; COMPUTER PROGRAM; FUNCTIONAL MAGNETIC RESONANCE IMAGING; IMAGE ANALYSIS; IMAGE QUALITY; INFORMATION PROCESSING; MEDICAL INFORMATION SYSTEM; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; REVIEW; THREE DIMENSIONAL IMAGING;

EID: 14544289088     PISSN: 10675027     EISSN: None     Source Type: Journal    
DOI: 10.1197/jamia.M1671     Document Type: Article

References (54)

1. J.F. Brinkley, and C. Rosse Imaging and the Human Brain Project: a review Methods Inf Med 41 2002 245 260
2. J.C. Gee, M. Reivich, and R. Bajcsy Elastically deforming 3D atlas to match anatomical brain images J. Comput Assist Tomograph 17 2 1993 225 236
3. D.L. Collins, D.J. Holmes, T.M. Peters, and A.C. Evans Automatic 3-D model-based neuroanatomical segmentation Hum Brain Mapp 3 1995 190 208
4. D.C. Van Essen, and H.A. Drury Structural and functional analysis of human cerebral cortex using a surface-based atlas J Neurosci 17 18 1997 7079 7102
5. B. Fischl, M.I. Sereno, and A.M. Dale Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system Neuroimage 9 2 1999 195 207
6. Evers H, Mayer A, Engelmann U, et al. Extending a teleradiology system by tools for 3D-visualization and volumetric analysis through a plug-in mechanism. In: Proc MEDINFO. 1998:1033-5.
7. S. Samothrakis, T.N. Arvanitis, A. Plataniotis, M.D. McNeill, and P.F. Lister WWW creates new interactive 3D graphics and collaborative environments for medical research and education Int J Med Inf 47 1997 69 73
8. Nigel WJ, Riding M, Sadarjoen A, Blumrozen L. Bringing 3D to teleradiology. In: International Conference on Information Visualization (IV2000). 2000, p 4.
9. Poliakov AV, Albright E, Corina D, Ojemann G, Martin RF, Brinkley JF. Server-based approach to web visualization of integrated 3-D medical image data. In: Proc. AMIA Fall Symposium. 2001:533-7. Available at: http://quad.biostr. washington.edu/~andrew/cgi-bin/Brain_Browser.cgi?patient=P54. Accessed January 4, 2005.
10. S. Koslow, and S. Hyman Human Brain Project: A program for the new millennium Einstein Quarterly J Biol Med 17 2000 7 15
11. C.A. Cocosco, V. Kollokian, R.K. Kwan, and A.C. Evans BrainWeb: online interface to a 3D MRI simulated brain database Neuroimage 5 4 1997 S425 Available at: http://www.bic.mni.mcgill.ca/brainweb/ Accessed January 4, 2005
12. Cocosco CA. ICBM View. Available at: http://www.bic.mni.mcgill.ca/cgi/ icbm_view/ ; 2004. Accessed January 4, 2005.
13. National Library of Medicine. The Visible Human Project. Available at: http://www.nlm.nih.gov/research/visible/visible_human.html ; 1996. Accessed January 4, 2005.
14. Johnson KA, Becker JA. The Whole Brain Atlas. Available at: http://www.med.harvard.edu/AANLIB/home.html ; 2001. Accessed January 4, 2005.
15. Bowden DM. Braininfo: A primate brain information system. Available at: http://braininfo.rprc.washington.edu ; 2001. Accessed January 4, 2005.
16. J.F. Brinkley, S.W. Bradley, J.W. Sundsten, and C. Rosse The Digital Anatomist information system and its use in the generation and delivery of Web-based anatomy atlases Comput Biomed Res 30 1997 472 503 Available at: http://www9.biostr.washington.edu/da.html Accessed January 4, 2005
17. P. Golland, R. Kikinis, and M. Halle AnatomyBrowser: a novel approach to visualization and integration of medical information Comput Assist Surg 4 1999 129 143 Available at: http://splweb.bwh.harvard.edu:8000/pages/papers/ AnatomyBrowser/current/index.html#curr Accessed January 4, 2005
18. International Neuroimaging Consortium. Cortical Flat Mapping. Available at: http://www.neurovia.umn.edu/incweb/circlepack/ ; 2000. Accessed January 4, 2005.
19. Toga AW. UCLA Laboratory for Neuro Imaging (LONI). Available at: http://www.loni.ucla.edu/ ; 2001. Accessed January 4, 2005.
20. A. Luttgau, and R. Bendl Technical aspects of internet based knowledge presentation in radiology Med Inform Internet Med 26 4 2001 265 281
21. V. Falk, D. Mintz, J. Grunenfelder, J.I. Fann, and T.A. Burdon Influence of three-dimensional vision on surgical telemanipulator performance Surg Endosc 15 11 2001 1282 1288
22. E.P. Wilkinson, R. Shahidi, B. Wang, D.P. Martin, J.R. Adler Jr., and G.K. Steinberg Remote-rendered 3D CT angiography (3DCTA) as an intraoperative aid in cerebrovascular neurosurgery Comput Aided Surg 4 1999 256 263
23. Sereno MI. Webcortex: Web interface to cortical surface database. Available at: http://cogsci.ucsd.edu/~sereno/webcortex.html ; 2001. Accessed January 4, 2005.
24. A.M. Dale, B. Fischl, and M.I. Sereno Cortical surface-based analysis. I. Segmentation and surface reconstruction Neuroimage 9 2 1999 179 194
25. Van Essen D, Dickson J, Harwell J, Hanlon D. WebCaret and SumsDB: online access to surface-based representations of cerebral and cerebellar cortex in primates and rodents. In: Human Brain Project Annual Meeting. Bethesda, MD; 2004. Available at: http://www.nimh.nih.gov/neuroinformatics/vanessen204.cfm. Accessed January 4, 2005.
26. D.C. Van Essen, H.A. Drury, J. Dickson, J. Harwell, D. Hanlon, and C.H. Anderson An integrated software suite for surface-based analysis of cerebral cortex J Am Med Inform Assoc 8 5 2001 443 459 Available at: http://stp.wustl.edu Accessed January 4, 2005
27. Engel K, Sommer O, Ertl T. A framework for interactive hardware-accelerated remote 3D-visualization. In: de Leeuw W, van Liere R (eds). Data Visualization 2000: Proceedings of the Joint Eurographics and IEEE Tcvg Symposium on Visualization in Amsterdam, the Netherlands, May 29-31, 2000. Vienna: Springer; 2000. Available at: http://www2.chemie.uni-erlangen.de/ projects/ChemVis/VisSym2000.pdf. Accessed January 4, 2005.
28. Web 3D Consortium. X3D. Available at: http://www.web3d.org/index.html; 2004. Accessed January 4, 2005.
29. J.F. Brinkley, L.M. Myers, and J.S. Prothero A structural information framework for brain mapping S.H. Koslow M.F. Huerta Neuroinformatics: An Overview of the Human Brain Project 1997 Lawrence Erlbaum Mahwah, NJ 309 334
30. G. Ojemann, J. Ojemann, E. Lettich, and M. Berger Cortical language localization in left, dominant hemisphere: an electrical stimulation mapping investigation in 117 patients J. Neurosurg 71 1989 316 326
31. K.P. Hinshaw, A.V. Poliakov, R.F. Martin, E.B. Moore, L.G. Shapiro, and J.F. Brinkley Shape-based cortical surface segmentation for visualization brain mapping Neuroimage 16 2 2002 295 316 Available at: http://sig.biostr.washington. edu/publications/online/neuroimage2002 Accessed January 4, 2005
32. Poliakov AV, Hinshaw KP, Rosse C, Brinkley JF. Integration and visualization of multimodality brain data for language mapping. In: Proc AMIA Fall Symp. Washington, DC; 1999:349-53.
33. L.D. Stein Official Guide to Programming with CGI.pm 1998 John Wiley & Sons New York, NY
34. Jakobovits RM, Modayur B, Brinkley JF. A Web-based repository manager for brain mapping data. In: Proc AMIA Fall Symp. Washington, DC; 1996:309-13.
35. R.M. Jakobovits, C. Rosse, and J.F. Brinkley An open source toolkit for building biomedical web applications J Am Med Inform Assoc 9 6 2002 557 590 Available at: http://sigpubs.biostr.washington.edu/archive/00000134/ Accessed January 4, 2005
36. J.F. Brinkley, and J.S. Prothero Slisp: A flexible software toolkit for hybrid, embedded and distributed applications Software - Practice and Experience 27 1 1997 33 48
37. Prothero JS, Hinshaw KP, Brinkley JF. Skandha4 and Slisp. Available at: http://sig.biostr.washington.edu/projects/skandha4/ ; 1997. Accessed January 4, 2005.
38. J.D. Hood Using AutoCAD with AutoLISP 1990 McGraw Hill New York, NY
39. Mesa. The Mesa 3D Graphics Library. Available at: http://www.mesa3d.org/; 2004. Accessed January 4, 2005.
40. Wong BA, Rosse C, Brinkley JF. Semi-automatic scene generation using the Digital Anatomist Foundational Model. In: Proc AMIA Fall Symp. Washington, DC; 1999:637-41.
41. J.F. Brinkley, B.A. Wong, K.P. Hinshaw, and C. Rosse Design of an anatomy information system Computer Graphics and Applications 19 3 1999 38 48 Available at: http://sigpubs.biostr.washington.edu/archive/00000024/ Accessed January 4, 2005
42. Poliakov AV, Brinkley JF. Brain Visualizer. Available at: http://sig.biostr.washington.edu/projects/brainVisualizer/; 2004. Accessed January 4, 2005.
43. Evans AC, Collins DL, Mills SR, Brown ED, Kelly RL, Peters TM. 3D statistical neuroanatomical models from 305 MRI volumes. In: Proceedings, IEEE Nuclear Science Symposium and Medical Imaging Conference. 1993:1813-7.
44. D.L. Collins, P. Neelin, T.M. Peters, and A.C. Evans Automatic 3-D intersubject registration of MR volumetric data in standardized Talairach space J Comput Assist Tomograph 18 2 1994 192 205
45. Corina DP, Steury KR, Mulligan KA, et al. A comparison of language cortex identified by cortical stimulation mapping and fMRI techniques. In: Abstracts, Society for Neuroscience Annual Meeting. Miami, FL; 1999:654.2.
46. Corina DP, Poliakov AV, Steury K, et al. Correspondences between language cortex identified by cortical stimulation mapping and fMRI. Neuroimage (Human Brain Mapping Annual Meeting, June 12-16). 2000;11(5):S295.
47. Martin RF, Poliakov AV, Mulligan KA, et al. Multi-patient mapping of language sites on 3-D brain models. In: Abstracts, 30th Annual Meeting, Society for Neuroscience. New Orleans, LA; 2000:464.20.
48. S. Serafini Functional neuroanatomy during language processing: correspondence of cortical stimulation mapping, fMRI, PEPSI and ERP during a visual object naming task [PhD Thesis] 2002 University of Washington Seattle, WA
49. Kinbar K, Martin R, Hill J, et al. Naming deficits during cortical stimulation mapping: functional specificity reconsidered. In: Proceedings, 8th Annual Meeting, Cognitive Neuroscience Society (CMS). New York, NY;2001:126.
50. E. Albright Dynamic Scene Generation and Software Parallel Rendering of Anatomical Structures [MS] 2000 University of Washington Seattle, WA
51. W. Schroeder, and T. Citriniti Decimating polygon meshes Dr. Dobb's Journal 22 7 1997 109 110
52. Montreal Neurological Institute. MINC. Available at: ftp://ftp.bic.mni. mcgill.ca/pub/minc/README; 2002. Accessed January 4, 2005.
53. Moore E, Poliakov A, Brinkley JF. Brain visualization in Java3D. In: Proceedings, MEDINFO. San Francisco, CA; 2004. Available at: http://sigpubs.biostr.washington.edu/archive/00000151/. Accessed January 4, 2005.
54. P. Tarczy-Hornoch, T.S. Kwan-Gett, and L. Fouche Meeting clinician information needs by integrating access to the medical record and knowledge resources via the Web Proc AMIA Annu Fall Symp 1997 809 813