Signal assignments and chemical-shift structural analysis of uniformly 13c, 15N-labeled peptide, mastoparan-X, by multidimensional solid-state NMR under magic-angle spinning

Journal of Biomolecular NMR

Volumn 28, Issue 4, 2004, Pages 311-325

  Fujiwara, Toshimichi ^a   Todokoro, Yasuto ^a   Yanagishita, Hajime ^b   Tawarayama, Midori ^b   Kohno, Toshiyuki ^c   Wakamatsu, Kaori ^d   Akutsu, Hideo ^a  

^a OSAKA UNIVERSITY   (Japan)

^b YOKOHAMA NATIONAL UNIVERSITY   (Japan)

^c MITSUBISHI KAGAKU INSTITUTE OF LIFE SCIENCES   (Japan)

^d GUNMA UNIVERSITY   (Japan)

Author keywords

Isotope labeling; Magic angle spinning; Mastoparan X; Multidimensional NMR; Recoupling; Signal assignment; Solid state NMR

Indexed keywords

CARBON; CARBON 13; GLYCINE DERIVATIVE; GUANINE NUCLEOTIDE BINDING PROTEIN; MASTOPARAN X; MEMBRANE PROTEIN; NITROGEN; NITROGEN 15; PEPTIDE; UNCLASSIFIED DRUG;

ALPHA HELIX; ARTICLE; CARBON NUCLEAR MAGNETIC RESONANCE; CONTROLLED STUDY; CORRELATION ANALYSIS; EMPIRICISM; ESCHERICHIA COLI; ISOTOPE LABELING; MEMBRANE BINDING; MOLECULAR INTERACTION; NITROGEN NUCLEAR MAGNETIC RESONANCE; NONHUMAN; POLARIZATION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DATABASE; PROTEIN STRUCTURE; PROTON NUCLEAR MAGNETIC RESONANCE; QUANTUM CHEMISTRY; SEQUENCE ANALYSIS; SOLID STATE; SPIN TRAPPING; STRUCTURE ANALYSIS;

CARBON ISOTOPES; MAGNETIC RESONANCE IMAGING; MODELS, MOLECULAR; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDES; PROTEIN STRUCTURE, SECONDARY;

EID: 1442355446     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:JNMR.0000015377.17021.b0     Document Type: Article

References (57)

1. Astrof, N.S. and Griffin, R.G. (2002) J. Magn. Reson., 158, 157-163.
2. Balbach, J.J., Ishii, Y., Antzutkin, O.N., Leapman, R.D., Rizzo, N.W., Dyda, F., Reed, J. and Tycko, R. (2000a) Biochemistry, 39, 13748-13759.
3. Balbach, J.J., Yang, J., Weliky, D.P., Steinbach, P.J., Tugarinov, V., Anglister, J. and Tycko, R. (2000b) J. Biomol. NMR, 16, 313-327.
4. Baldus, M. (2002) Progr. NMR Spectrosc., 41, 1-47.
5. Baldus, M., Petkova, A.T., Herzfeld, J. and Griffin, R.G. (1999) Mol. Phys., 95, 1197-1207.
6. Bennett, A.E., Rienstra, C.M., Auger, M., Lakshmi, K.V. and Griffin, R.G. (1995) J. Chem. Phys., 103, 6951-6958.
7. Bennett, A.,E., Rienstra, C.M., Griffiths, J.M., Zhen, W., Lansbury Jr., P.T. and Griffin, R.G. (1998) J. Chem. Phys., 108, 9463-9479.
8. Bevington, P.R. and Robinson, D.K. (1992) Data Reduction and Error Analysis for the Physical Sciences, WCB/McGraw-Hill, Boston, MA.
9. Caldarelli, S. and Emsley, L. (1998) J. Magn. Reson., 130, 233-237.
10. Castellani, F., van Rossum, B., Diehl, A., Schubert, M., Rehbein, K. and Oschkinat, H. (2002) Nature, 420, 98-102.
11. Cavanagh, J., Fairbrother, W.J., Palmer III, A.G. and Skelton, N.J. (1996) Protein NMR Spectroscopy, Academic Press, San Diego, CA.
12. Cornell, W.D., Cieplak, P., Bayly, C.I., Gould, I.R., Merz Jr., K.M., Ferguson, D.M., Spellmeyer, D.C., Fox, T., Caldwell, J.W. and Kollman, P.A. (1995) J. Am. Chem. Soc., 117, 5179-5197.
13. Cornilescu, G., Delaglio, F. and Bax, A. (1999) J. Biomol. NMR, 13, 289-302.
14. de Groot, H.J.M. (2000) Curr. Opin. Struct. Biol., 10, 593-600.
15. Detken, A., Hardy, E.H., Ernst, M., Kainosho, M., Kawakami, T., Aimoto, S. and Meier, B.H. (2001) J. Biomol. NMR, 20, 203-221.
16. Egorova-Zachernyuk, T.A., Hollander, J., Fraser, N., Gast, P., Hoff, A.J., Cogdell, R., de Groot, H.J.M. and Baldus, M. (2001) J. Biomol. NMR, 19, 243-253.
17. Foster, M.P., Wuttke, D.S., Clemens, K.R., Jahnke, W., Radhakrishnan, I., Tennant, L., Reymond, M., Chung. J. and Wright, P.E. (1998) J. Biomol. NMR, 12, 51-71.
18. Fujiwara, T., Khandelwal, P. and Akutsu, H. (2000) J. Magn. Reson., 145, 73-83.
19. Fujiwara, T., Shimomura, T., Ohigashi, Y. and Akutsu, H. (1998) J. Chem. Phys., 109, 2380-2393.
20. Fujiwara, T., Sugase, K., Kainosho, M., Ono, A., Ono, A.(M.) and Akutsu, H. (1995) J. Am. Chem. Soc., 117, 11351-11352.
21. Griffin, R.G. (1998) Nat. Struct. Biol., 5, 508-512.
22. Hayashi, S. and Hayamizu, K. (1991) Bull. Chem. Soc. Jpn., 64, 685-687.
23. Higashijima, T., Burnier, J. and Ross, E.M. (1990) J. Biol. Chem., 265, 14176-14186.
24. Higashijima, T., Wakamatsu, K., Takemitsu, M., Fujino, M., Nakajima, T. and Miyazawa, T. (1983) FEBS Lett., 152, 227-230.
25. Hohwy, M., Rienstra, C.M. and Griffin, R.G. (2002) J. Chem. Phys., 117, 4973-4987.
26. Hohwy, M., Rienstra, C.M., Jaroniec, C.P. and Griffin, R.G. (1999) J. Chem. Phys., 110, 7983-7991.
27. Hong, M. (1999) J. Biomol. NMR, 15, 1-14.
28. Hong, M. and Jakes, K. (1999) J. Biomol. NMR, 14, 71-74.
29. Hughes, E. and Middleton, D.A. (2003) J. Biol. Chem., 278, 20835-20842.
30. Iwadate, M,. Asakura, T. and Williamson, M.P. (1999) J. Biomol. NMR, 13, 199-211.
31. Kohno, T., Kusunoki, H., Sato, K. and Wakamatsu, K. (1998) J. Biomol. NMR, 12, 109-121.
32. Kusunoki, H., Wakamatsu, K., Sato, K., Miyazawa, T. and Kohno, T. (1998) Biochemistry, 37, 4782-4790.
33. LeMaster, D.M. and Kushlan, D.M. (1996) J. Am. Chem. Soc., 118, 9255-9264.
34. Lindberg, M., Jarvet, J. and Gräslund, A. (2001) Biochemistry, 40, 3141-3149.
35. Luca, S., Filippov, D.V., van Boom, J.H., Oschkinat, H., de Groot, H.J.M. and Baldus, M. (2001) J. Biomol. NMR, 20, 325-331.
36. Markley, J.L., Bax, A., Arata, Y., Hilbers, C.W., Kaptein, R., Sykes, B.D., Wright, P.E. and Wüthrich, K. (1998) Pure Appl. Chem., 70, 117-142.
37. Matsuki, Y., Akutsu, H. and Fujiwara, T. (2003) J. Magn. Reson., 162, 54-66.
38. Matsuzaki, K., Yoneyama, S., Murase, O. and Miyajima, K. (1996) Biochemistry, 35, 8450-8456.
39. McDermott, A., Polenova, T., Bockmann, A., Zilm, K.W., Paulsen, E. K., Martin, R.W. and Montelione, G.T. (2000) J. Biomol. NMR, 16, 209-219.
40. Metz, G., Wu, X. and Smith, S.O. (1994) J. Magn. Reson. A, 110, 219-227.
41. Nomura, K., Takegoshi, K., Terao, T., Uchida, K. and Kainosho, M. (2000) J. Biomol. NMR, 17, 111-123.
42. Pauli, J., Baldus, M., van Rossum, B., de Groot, H. and Oschkinat, H. (2001) ChemBioChem, 2, 272-281.
43. Pauli, J., van Rossum, B., Förster, H., Huub, J.M., de Groot, H. and Oschkinat, H. (2000) J. Magn. Reson., 143, 411-416.
44. Petkova, A.T., Baldus, M., Belenky, M., Hong, M., Griffin, R.G. and Herzfeld, J. (2003) J. Magn. Reson., 160, 2-13.
45. Ponder, J.W. and Richards, F.M. (1987) J. Comput. Chem., 8, 1016-1024.
46. Rienstra, C.M., Hohwy, M., Hong, M. and Griffin, R.G. (2000) J. Am. Chem. Soc., 122, 10979-10990.
47. Rienstra, C.M., Tucker-Kellogg, L., Jaroniec, C.P., Hohwy, M., Reif, B., McMahon, M.T., Tidor, B., Lozano-Pérez, T. and Griffin, R.G. (2002) Proc. Natl. Acad. Sci. USA, 99, 10260-10265.
48. Saito. H. and Ando, I. (1989) Annu. Rep. NMR Spectrosc., 21, 209-290.
49. Sayle, R.A. and Milner-White, E.J. (1995) Trends Biochem. Sci., 20, 374-376.
50. Straus. S.K., Bremi, T. and Ernst, R.R. (1996) Chem. Phys. Lett., 262, 709-715.
51. Straus, S.K., Bremi, T. and Ernst, R.R. (1998) J. Biomol. NMR, 12, 39-50.
52. Vold, R.R., Prosser, R.S. and Deese, A.J. (1997) J. Biomol. NMR, 9, 329-335.
53. Wakamatsu, K., Okada, A., Miyazawa, T., Ohya, M. and Higashijima, T. (1992) Biochemistry, 31, 5654-5660.
54. Whiles, J.A., Brasseur, R., Glover, K.J., Melacini, G., Komives, E.A. and Vold, R.R. (2001) Biophys. J., 80, 280-293.
55. Wishart, D.S. and Sykes, B.D. (1994) Meth. Enzymol., 239, 363-391.
56. Xu, X-P. and Case, D.A. (2001) J. Biomol. NMR, 21, 321-333.
57. Xu, X-P. and Case, D.A. (2002) Biopolymers, 65, 408-423.