Comparative genomics of the keratin-associated protein (KAP) gene clusters in human, chimpanzee, and baboon

Mammalian Genome

Volumn 15, Issue 3, 2004, Pages 179-192

  Shibuya, Kazunori ^a   Kudoh, Jun ^a   Obayashi, Izumi ^a   Shimizu, Atsushi ^a   Sasaki, Takashi ^a   Minoshima, Shinsei ^a,b   Shimizu, Nobuyoshi ^a  

^a KEIO UNIVERSITY   (Japan)

^b HAMAMATSU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

KERATIN ASSOCIATED PROTEIN; PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BABOON; CHIMPANZEE; COMPARATIVE GENOMIC HYBRIDIZATION; DNA SEQUENCE; GENE CLUSTER; GENE IDENTIFICATION; GENE SEQUENCE; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CHROMOSOMES, HUMAN, PAIR 21; CLUSTER ANALYSIS; EVOLUTION, MOLECULAR; GENOMICS; HUMANS; KERATINS; MOLECULAR SEQUENCE DATA; PAN TROGLODYTES; PAPIO; PHYLOGENY; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

ANTHROPOIDEA; CERCOPITHECIDAE; MAMMALIA; PAN TROGLODYTES; PAPIO HAMADRYAS; PRIMATES;

EID: 1442310962     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00335-003-2313-9     Document Type: Article

References (33)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215, 403-410
2. Aoki N, Ito K, Ito M (1998) Hair follicle has a novel anagen-specific protein, mKAP13. J Invest Dermatol 111, 804-809
3. Ceratto N, Dobkin C, Carter M, Jenkins E, Yao XL, et al. (1997) Human type I cytokeratin genes are a compact cluster. Cytogenet Cell Genet 77, 169-174
4. Cole SE, Reeves RH (1998) A cluster of keratin-associated proteins on mouse chromosome 10 in the region of conserved linkage with human chromosome 21. Genomics 54, 437-442
5. Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred II, error probabilities. Genome Res 8, 186-194
6. Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred I Accuracy assessment. Genome Res 8, 175-185
7. Gordon D, Abajian C, Green P (1998) Consed: a graphical tool for sequence finishing. Genome Res 8, 195-202
8. Kawasaki K, Minoshima S, Nakato E, Shibuya K, Shintani A, et al. (1997) One-megabase sequence analysis of the human immunoglobulin lambda gene locus. Genome Res 7, 250-261
9. Kudoh J, Nagamine K, Asakawa S, Abe I, Kawasaki K, et al. (1997) Localization of 16 exons to a 450-kb region involved in the autoimmune polyglandular disease type I (APECED) on human chromosome 21q22.3. DNA Res 4, 45-52
10. Kuhn F, Lassing C, Range A, Mueller M, Hunziker T, et al. (1999) Pmg-1 and pmg-2 constitute a novel family of KAP genes differentially expressed during skin and mammary gland development. Mech Dev 86, 193-196
11. Lalioti MD, Scott HS, Buresi C, Rossier C, Bottani A, et al. (1997) Dodecamer repeat expansion in cystatin B gene in progressive myoclonus epilepsy. Nature 386, 847-851
12. Lawrence CE, Altschul SF, Boguski MS, Liu JS, Neuwald AF, et al. (1993) Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science 262, 208-214
13. MacKinnon PJ, Powell BC, Rogers GE (1990) Structure and expression of genes for a class of cysteine-rich proteins of the cuticle layers of differentiating wool and hair follicles. J Cell Biol 111, 2587-2600
14. MacKinnon PJ, Powell BC, Rogers GE, Baker EG, MacKinnon RN, et al. (1991) An ultrahigh-sulphur keratin gene of the human hair cuticle is located at 11q13 and cross-hybridizes with sequences at 11p15. Mamm Genome 1, 53-56
15. Neuwald AF, Liu JS, Lawrence CE (1995) Gibbs motif sampling: detection of bacterial outer membrane protein repeats. Protein Sci 4, 1618-1632
16. Popescu NC, Bowden PE, DiPaolo JA (1989) Two type II keratin genes are localized on human chromosome 12. Hum Genet 82, 109-112
17. Powell BC, Nesci A, Rogers GE (1997) The role of keratin proteins and their genes in the growth, structure and properties of hair. In: Jollès P, Zahn H, Höcker H (eds). Formation and structure of human hair. Basel: Birkhauser Verlag, pp 59-148
18. Powell BC, Nesci A, Rogers GE (1991) Regulation of keratin gene expression in hair follicle differentiation. Ann N Y Acad Sci 642, 1-20
19. Rogers MA, Nischt R, Korge B, Krieg T, Fink TM, et al. (1995) Sequence data and chromosomal localization of human type I and type II hair keratin genes. Exp Cell Res 220, 357-362
20. Rogers MA, Langbein L, Winter H, Ehmann C, Praetzel S, et al. (2001) Characterization of a cluster of human high/ultrahigh sulfur keratin-associated protein genes embedded in the type I keratin gene domain on chromosome 17q12-21. J Biol Chem 276, 19440-19451
21. Rogers MA, Langbein L, Winter H, Ehmann C, Praetzel S, et al. (2002) Characterization of a first domain of human high glycine-tyrosine and high sulfur keratin-associated protein (KAP) genes on chromosome 21q221. J Biol Chem 277, 48993-49002
22. Romano V, Bosco P, Rocchi M, Costa G, Leube RE, et al. (1988) Chromosomal assignments of human type I and type II cytokeratin genes to different chromosomes. Cytogenet Cell Genet 48, 148-151
23. Rosenberg M, RayChaudhury A, Shows TB, Le Beau MM, Fuchs E (1988) A group of type I keratin genes on human chromosome 17: characterization and expression. Mol Cell Biol 8, 722-736
24. Rosenberg M, Fuchs E, Le Beau MM, Eddy RL, Shows TB (1991) Three epidermal and one simple epithelial type II keratin genes map to human chromosome 12. Cytogenet Cell Genet 57, 33-38
25. Scheel H, Tomiuk S, Hofmann K (2002) A common protein interaction domain links two recently identified epilepsy genes. Hum Mol Genet 11, 1757-1762
26. Shibuya K, Obayashi I, Asakawa S, Minoshima S, Kudoh J, et al. (2004) A cluster of 21 keratin-associated protein (KAP) genes within introns of another gene on human chromosome 21q22.3. Genomics, in press
27. Sonnhammer ELL, Durbin R (1995) A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 167, GC1-GC10
28. Takaishi M, Takata Y, Kuroki T, Huh N (1998) Isolation and characterization of a putative keratin-associated protein gene expressed in embryonic skin of mice. J Invest Dermatol 111, 128-132
29. The chromosome 21 mapping and sequencing consortium (2000) The DNA sequence of human chromosome 21. Nature 405, 311-319
30. Thompson P, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680
31. Tkatchenko AV, Visconti RP, Shang L, Papenbrock T, Pruett ND (2001) Overexpression of Hoxc13 in differentiating keratinocytes results in downregulation of a novel hair keratin gene cluster and alopecia. Development 128, 1547-1558
32. Watts NR, Jones LN, Cheng N, Wall JS, Parry DA (2002) Cryo-electron microscopy of trichocyte (hard alpha-keratin) intermediate filaments reveals a low-density core. J Struct Biol 137, 109-118
33. Yoon SJ, LeBlanc-Straceski J, Ward D, Krauter K, Kucherlapati R (1994) Organization of the human keratin type II gene cluster at 12q13. Genomics 24, 502-508