Protelomerase Uses a Topoisomerase IB/Y-Recombinase Type Mechanism to Generate DNA Hairpin Ends

Journal of Molecular Biology

Volumn 337, Issue 1, 2004, Pages 77-92

  Huang, Wai Mun ^a   Joss, Lisa ^a   Hsieh, Tingting ^a   Casjens, Sherwood ^a  

^a UNIVERSITY OF UTAH HEALTH SCIENCES CENTER   (United States)

Author keywords

DNA hairpin ends; Oligonucleotide substrates; Protein linked DNA intermediates; Topoisomerase; Y recombinase

Indexed keywords

DNA; DNA TOPOISOMERASE; MONOMER; NUCLEOTIDE; OLIGONUCLEOTIDE; PROTELOMERASE; RECOMBINASE; TELOMERASE; TOPOISOMERASE IB; TYROSINE; UNCLASSIFIED DRUG; Y RECOMBINASE;

AMINO ACID SEQUENCE; ARTICLE; BASE PAIRING; COMPARATIVE STUDY; ENZYME PURIFICATION; ENZYME SUBSTRATE; ESCHERICHIA COLI; EXPERIMENT; INVERTED REPEAT; KLEBSIELLA; MOLECULAR INTERACTION; MOLECULE; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; PROTEIN FAMILY; PROTEIN STRUCTURE; REACTION ANALYSIS; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS;

COLI PHAGE; ESCHERICHIA COLI; KLEBSIELLA;

EID: 1442302297     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2004.01.012     Document Type: Article

References (25)

1. Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B., et al. Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58. Science. 294:2001;2323-2328.
2. Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K., et al. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science. 294:2001;2317-2323.
3. Casjens S., Murphy M., DeLange M., Sampson L., van Vugt R., Huang W.M. Telomeres of the linear chromosomes of Lyme disease spirochaetes: nucleotide sequence and possible exchange with linear plasmid telomeres. Mol. Microbiol. 26:1997;581-596.
4. Fraser C.M., Casjens S., Huang W.M., Sutton G.G., Clayton R., Lathigra R., et al. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature. 390:1997;580-586.
5. Casjens S. Evolution of the linear DNA replicons of the Borrelia spirochetes. Curr. Opin. Microbiol. 2:1999;529-534.
6. Hinnebusch J., Barbour A.G. Linear plasmids of Borrelia burgdorferi have a telomeric structure and sequence similar to those of a eukaryotic virus. J. Bacteriol. 173:1991;7233-7239.
7. Casjens S., Palmer N., van Vugt R., Huang W.M., Stevenson B., Rosa P., Lathigra R., et al. A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi. Mol. Microbiol. 35:2000;490-516.
8. Malinin A., Vostrov A., Rybchin V., Sverchevsky A. Structure of the linear plasmid N15 ends (in Russian). Mol. Genet. 5-6:1992;19-22.
9. Rybchin V.N., Svarchevsky A.N. The plasmid prophage N15: a linear DNA with covalently closed ends. Mol. Microbiol. 33:1999;895-903.
10. Hertwig S., Klein I., Lurz R., Lanka E., Appel B. PY54, a linear plasmid prophage of Yersinia enterocolitica with covalently closed ends. Mol. Microbiol. 48:2003;989-1003.
11. Kobryn K., Chaconas G. ResT, a telomere resolvase encoded by the Lyme disease spirochete. Mol. Cell. 9:2002;195-201.
12. Ravin V., Ravin N., Casjens S., Ford M.E., Hatfull G.F., Hendrix R.W. Genomic sequence and analysis of the atypical temperate bacteriophage N15. J. Mol. Biol. 299:2000;53-73.
13. Deneke J., Ziegelin G., Lurz R., Lanka E. The protelomerase of temperate Escherichia coli phage N15 has cleaving-joining activity. Proc. Natl Acad. Sci. USA. 97:2000;7721-7726.
14. Deneke J., Ziegelin G., Lurz R., Lanka E. Phage N15 telomere resolution. Target requirements for recognition and processing by the protelomerase. J. Biol. Chem. 277:2002;10410-10419.
15. Ravin N.V., Strakhova T.S., Kuprianov V.V. The protelomerase of the phage-plasmid N15 is responsible for its maintenance in linear form. J. Mol. Biol. 312:2001;899-906.
16. Stoppel R.D., Meyer M., Schlegel H.G. The nickel resistance determinant cloned from the enterobacterium Klebsiella oxytoca: conjugational transfer, expression, regulation and DNA homologies to various nickel-resistant bacteria. Biometals. 8:1995;70-79.
17. Casjens S., Gilcrease E., Huang W.M., Bunny K., Pedulla F.M., Houtz J.M., et al. The pKO2 linear plasmid prophage of Klebsiella oxytoca. J. Bacteriol. 2004;. In the press.
18. Johnson M.L., Correia J.J., Ypahantis D.A., Halvorson H.R. Analysis of data from analytical ultracentrifuge by non-linear least squares techniques. Biophys. J. 36:1981;575-588.
19. Chaconas G., Stewart P.E., Tilly K., Bono J.L., Rosa P. Telomere resolution in the Lyme disease spirochete. EMBO J. 20:2001;3229-3237.
20. Tourand Y., Kobryn K., Chaconas G. Sequence-specific recognition but position-dependent cleavage of two distinct telomeres by the Borrelia burgdorferi telomere resolvase, ResT. Mol. Microbiol. 48:2003;901-911.
21. Oakey H.J., Cullen B.R., Owens L. The complete nucleotide sequence of the Vibrio harveyi bacteriophage VHML. J. Appl. Microbiol. 93:2002;1089-1098.
22. Nunes-Duby S.E., Kwon H.J., Tirumalai R.S., Ellenberger T., Landy A. Similarities and differences among 105 members of the Int family of site-specific recombinases. Nucl. Acids Res. 26:1998;391-406.
23. Esposito D., Scocca J.J. The integrase family of tyrosine recombinases: evolution of a conserved active site domain. Nucl. Acids Res. 25:1997;3605-3614.
24. Krogh B.O., Shuman S. A poxvirus-like type IB topoisomerase family in bacteria. Proc. Natl Acad. Sci. USA. 99:2002;1853-1858.
25. Laue, T. M., Shah, B. D., Ridgeway, T. M. & Pelletier, S. L. (1992). Computer aided interpretation of analytical sedimentation data for proteins. In Ultracentrifugation in Biochemistry and Polymer Science, Cambridge University Press, Cambridge.