메뉴 건너뛰기




Volumn 44, Issue 12, 2005, Pages 4861-4869

Structural details of the thermophilic filamentous bacteriophage PH75 determined by polarized Raman microspectroscopy

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPY; BACTERIA; DNA; HYDROGEN BONDS; RAMAN SPECTROSCOPY; THERMODYNAMIC STABILITY; X RAY DIFFRACTION ANALYSIS;

EID: 14344265860     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0479306     Document Type: Article
Times cited : (31)

References (29)
  • 2
    • 0034827721 scopus 로고    scopus 로고
    • Tryptophan absolute stereochemistry in viral coat proteins from Raman optical activity
    • Blanch, E. W., Hecht, L., Day, L. A., Pederson, D. M., and Barron, L. D. (2001) Tryptophan absolute stereochemistry in viral coat proteins from Raman optical activity, J. Am. Chem. Soc. 123, 4863-4864.
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 4863-4864
    • Blanch, E.W.1    Hecht, L.2    Day, L.A.3    Pederson, D.M.4    Barron, L.D.5
  • 3
    • 5444261667 scopus 로고    scopus 로고
    • Structural characterization of the filamentous bacteriophage PH75 from Thermus thermophilus by Raman and UV-resonance Raman spectroscopy
    • Overman, S. A., Bondre, P., Maiti, N. C., and Thomas, G. J., Jr. (2004) Structural characterization of the filamentous bacteriophage PH75 from Thermus thermophilus by Raman and UV-resonance Raman spectroscopy, Biochemistry 43, 13129-13136.
    • (2004) Biochemistry , vol.43 , pp. 13129-13136
    • Overman, S.A.1    Bondre, P.2    Maiti, N.C.3    Thomas Jr., G.J.4
  • 5
    • 0032054113 scopus 로고    scopus 로고
    • Filamentous phage structure, infection and assembly
    • Marvin, D. A. (1998) Filamentous phage structure, infection and assembly, Curr. Opin. Struct. Biol. 8, 150-158.
    • (1998) Curr. Opin. Struct. Biol. , vol.8 , pp. 150-158
    • Marvin, D.A.1
  • 6
    • 0001766135 scopus 로고    scopus 로고
    • Raman scattering tensors in biological molecules and their assemblies
    • Tsuboi, M., and Thomas, G. J., Jr. (1997) Raman scattering tensors in biological molecules and their assemblies, Appl. Spectrosc. Rev. 32, 263-299.
    • (1997) Appl. Spectrosc. Rev. , vol.32 , pp. 263-299
    • Tsuboi, M.1    Thomas Jr., G.J.2
  • 7
    • 0029971090 scopus 로고    scopus 로고
    • Subunit orientation in the filamentous virus Ff (fd, f1, M13)
    • Overman, S. A., Tsuboi, M., and Thomas, G. J., Jr. (1996) Subunit orientation in the filamentous virus Ff (fd, f1, M13), J. Mol. Biol. 259, 331-336.
    • (1996) J. Mol. Biol. , vol.259 , pp. 331-336
    • Overman, S.A.1    Tsuboi, M.2    Thomas Jr., G.J.3
  • 8
    • 0037340562 scopus 로고    scopus 로고
    • Orientation and interactions of an essential tryptophan (Trp-38) in the capsid subunit of Pf3 filamentous virus
    • Tsuboi, M., Overman, S. A., Nakamura, K., Rodriguez-Casado, A., and Thomas, G. J., Jr. (2003) Orientation and interactions of an essential tryptophan (Trp-38) in the capsid subunit of Pf3 filamentous virus, Biophys. J. 84, 1969-1976.
    • (2003) Biophys. J. , vol.84 , pp. 1969-1976
    • Tsuboi, M.1    Overman, S.A.2    Nakamura, K.3    Rodriguez-Casado, A.4    Thomas Jr., G.J.5
  • 9
    • 0037417751 scopus 로고    scopus 로고
    • Protein and DNA residue orientations in the filamentous virus Pf1 determined by polarized Raman and polarized FTIR spectroscopy
    • Tsuboi, M., Kubo, Y., Ikeda, T., Overman, S. A., Osman, O., and Thomas, G. J., Jr. (2003) Protein and DNA residue orientations in the filamentous virus Pf1 determined by polarized Raman and polarized FTIR spectroscopy, Biochemistry 42, 940-950.
    • (2003) Biochemistry , vol.42 , pp. 940-950
    • Tsuboi, M.1    Kubo, Y.2    Ikeda, T.3    Overman, S.A.4    Osman, O.5    Thomas Jr., G.J.6
  • 10
    • 0029824276 scopus 로고    scopus 로고
    • Orientation of tryptophan-26 in coat protein subunits of the filamentous virus Ff by polarized Raman microspectroscopy
    • Tsuboi, M., Overman, S. A., and Thomas, G. J., Jr. (1996) Orientation of tryptophan-26 in coat protein subunits of the filamentous virus Ff by polarized Raman microspectroscopy, Biochemistry 35, 10403-10410.
    • (1996) Biochemistry , vol.35 , pp. 10403-10410
    • Tsuboi, M.1    Overman, S.A.2    Thomas Jr., G.J.3
  • 11
    • 0035814753 scopus 로고    scopus 로고
    • Orientations of Tyr 21 and Tyr 24 in the capsid of filamentous virus Ff determined by polarized Raman spectroscopy
    • Tsuboi, M., Ushizawa, K., Nakamura, K., Benevides, J. M., Overman, S. A., and Thomas, G. J., Jr. (2001) Orientations of Tyr 21 and Tyr 24 in the capsid of filamentous virus Ff determined by polarized Raman spectroscopy, Biochemistry 40, 1238-1247.
    • (2001) Biochemistry , vol.40 , pp. 1238-1247
    • Tsuboi, M.1    Ushizawa, K.2    Nakamura, K.3    Benevides, J.M.4    Overman, S.A.5    Thomas Jr., G.J.6
  • 12
    • 84988169971 scopus 로고
    • Raman microscopy of a small uniaxial crystal: Tetragonal aspartame
    • Tsuboi, M., Ikeda, T., and Ueda, T. (1991) Raman microscopy of a small uniaxial crystal: Tetragonal aspartame, J. Raman Spectrosc. 22, 619-626.
    • (1991) J. Raman Spectrosc. , vol.22 , pp. 619-626
    • Tsuboi, M.1    Ikeda, T.2    Ueda, T.3
  • 13
    • 0003020198 scopus 로고    scopus 로고
    • Raman tensors for the tryptophan side chain in proteins determined by polarized Raman microspectroscopy of oriented N-acetyl-L-tryptophan crystals
    • Tsuboi, M., Ueda, T., Ushizawa, K., Ezaki, Y., Overman, S. A., and Thomas, G. J., Jr. (1996) Raman tensors for the tryptophan side chain in proteins determined by polarized Raman microspectroscopy of oriented N-acetyl-L-tryptophan crystals, J. Mol. Struct. 379, 43-50.
    • (1996) J. Mol. Struct. , vol.379 , pp. 43-50
    • Tsuboi, M.1    Ueda, T.2    Ushizawa, K.3    Ezaki, Y.4    Overman, S.A.5    Thomas Jr., G.J.6
  • 15
    • 0035895340 scopus 로고    scopus 로고
    • Structure and organization of bacteriophage Pf3 probed by Raman and ultraviolet resonance Raman spectroscopy
    • Wen, Z. Q., Overman, S. A., Bondre, P., and Thomas, G. J., Jr. (2001) Structure and organization of bacteriophage Pf3 probed by Raman and ultraviolet resonance Raman spectroscopy, Biochemistry 40, 449-458.
    • (2001) Biochemistry , vol.40 , pp. 449-458
    • Wen, Z.Q.1    Overman, S.A.2    Bondre, P.3    Thomas Jr., G.J.4
  • 16
    • 0021095333 scopus 로고
    • Structure similarity, difference and variability in the filamentous viruses fd, If1, IKe, Pf1, Xf and Pf3
    • Thomas, G. J., Jr., Prescott, B., and Day, L. A. (1983) Structure similarity, difference and variability in the filamentous viruses fd, If1, IKe, Pf1, Xf and Pf3, J. Mol. Biol. 165, 321-356.
    • (1983) J. Mol. Biol. , vol.165 , pp. 321-356
    • Thomas Jr., G.J.1    Prescott, B.2    Day, L.A.3
  • 18
    • 0023155210 scopus 로고
    • Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
    • Ponder, J. W., and Richards, F. M. (1987) Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes, J. Mol. Biol. 193, 775-791.
    • (1987) J. Mol. Biol. , vol.193 , pp. 775-791
    • Ponder, J.W.1    Richards, F.M.2
  • 19
    • 0028058295 scopus 로고
    • Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages: Ff (fd, f1, MB), If1 and IKe
    • Marvin, D. A., Hale, R. D., Nave, C., and Citterich, M. H. (1994) Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages: Ff (fd, f1, MB), If1 and IKe, J. Mol. Biol. 235, 260-286.
    • (1994) J. Mol. Biol. , vol.235 , pp. 260-286
    • Marvin, D.A.1    Hale, R.D.2    Nave, C.3    Citterich, M.H.4
  • 20
    • 0028894101 scopus 로고
    • Matching electrostatic charge between DNA and coat protein in filamentous bacteriophage. Fibre diffraction of charge-deletion mutants
    • Symmons, M. F., Welsh, L. C., Nave, C., Marvin, D. A., and Perham, R. N. (1995) Matching electrostatic charge between DNA and coat protein in filamentous bacteriophage. Fibre diffraction of charge-deletion mutants, J. Mol. Biol. 245, 86-91.
    • (1995) J. Mol. Biol. , vol.245 , pp. 86-91
    • Symmons, M.F.1    Welsh, L.C.2    Nave, C.3    Marvin, D.A.4    Perham, R.N.5
  • 21
    • 84988158466 scopus 로고
    • Tryptophan Raman bands sensitive to hydrogen bonding and side-chain conformation
    • Miura, T., Takeuchi, H., and Harada, I. (1989) Tryptophan Raman bands sensitive to hydrogen bonding and side-chain conformation, J. Raman Spectrosc. 20, 667-671.
    • (1989) J. Raman Spectrosc. , vol.20 , pp. 667-671
    • Miura, T.1    Takeuchi, H.2    Harada, I.3
  • 22
    • 0035957121 scopus 로고    scopus 로고
    • Tyrosine Raman signatures of the filamentous virus Ff are diagnostic of non-hydrogen-bonded phenoxyls: Demonstration by Raman and infrared spectroscopy of p-cresol vapor
    • Arp, Z., Autrey, D., Laane, J., Overman, S. A., and Thomas, G. J., Jr. (2001) Tyrosine Raman signatures of the filamentous virus Ff are diagnostic of non-hydrogen-bonded phenoxyls: Demonstration by Raman and infrared spectroscopy of p-cresol vapor, Biochemistry 40, 2522-2529.
    • (2001) Biochemistry , vol.40 , pp. 2522-2529
    • Arp, Z.1    Autrey, D.2    Laane, J.3    Overman, S.A.4    Thomas Jr., G.J.5
  • 23
    • 0024286078 scopus 로고
    • Sugar pucker and phosphodiester conformations in viral genomes of filamentous bacteriophages: Fd, If1, IKe, Pf1, Xf, and Pf3
    • Thomas, G. J., Jr., Prescott, B., Opella, S. J., and Day, L. A. (1988) Sugar pucker and phosphodiester conformations in viral genomes of filamentous bacteriophages: fd, If1, IKe, Pf1, Xf, and Pf3, Biochemistry 27, 4350-4357.
    • (1988) Biochemistry , vol.27 , pp. 4350-4357
    • Thomas Jr., G.J.1    Prescott, B.2    Opella, S.J.3    Day, L.A.4
  • 24
    • 0001592310 scopus 로고    scopus 로고
    • Demonstration by ultraviolet resonance Raman spectroscopy of differences in DNA organization and interactions in filamentous viruses Pf1 and fd
    • Wen, Z. Q., Armstrong, A., and Thomas, G. J., Jr. (1999) Demonstration by ultraviolet resonance Raman spectroscopy of differences in DNA organization and interactions in filamentous viruses Pf1 and fd, Biochemistry 38, 3148-3156.
    • (1999) Biochemistry , vol.38 , pp. 3148-3156
    • Wen, Z.Q.1    Armstrong, A.2    Thomas Jr., G.J.3
  • 25
    • 0034142068 scopus 로고    scopus 로고
    • The molecular structure and structural transition of the α-helical capsid in filamentous bacteriophage Pf1
    • Welsh, L. C., Symmons, M. F., and Marvin, D. A. (2000) The molecular structure and structural transition of the α-helical capsid in filamentous bacteriophage Pf1, Acta Crystallogr., Sect. D: Biol. Crystallogr. 56 (Part 2), 137-150.
    • (2000) Acta Crystallogr., Sect. D: Biol. Crystallogr. , vol.56 , Issue.2 PART , pp. 137-150
    • Welsh, L.C.1    Symmons, M.F.2    Marvin, D.A.3
  • 26
    • 0026316645 scopus 로고
    • Raman spectroscopy of filamentous bacteriophage Ff (fd, M13, f1) incorporating specifically-deuterated alanine and tryptophan side chains: Assignments and structural interpretation
    • Aubrey, K. L., and Thomas, G. J., Jr. (1991) Raman spectroscopy of filamentous bacteriophage Ff (fd, M13, f1) incorporating specifically-deuterated alanine and tryptophan side chains: Assignments and structural interpretation, Biophys. J. 61, 1337-1349.
    • (1991) Biophys. J. , vol.61 , pp. 1337-1349
    • Aubrey, K.L.1    Thomas Jr., G.J.2
  • 27
    • 0028999261 scopus 로고
    • Raman spectroscopy of the filamentous virus Ff (fd, f1, M13): Structural interpretation for coat protein aromatics
    • Overman, S. A., and Thomas, G. J., Jr. (1995) Raman spectroscopy of the filamentous virus Ff (fd, f1, M13): Structural interpretation for coat protein aromatics, Biochemistry 34, 5440-5451.
    • (1995) Biochemistry , vol.34 , pp. 5440-5451
    • Overman, S.A.1    Thomas Jr., G.J.2
  • 28
    • 0033616633 scopus 로고    scopus 로고
    • Raman markers of nonaromatic side chains in an α-helix assembly: Ala, Asp, Glu, Gly, Ile, Leu, Lys, Ser, and Val residues of phage fd Subunits
    • Overman, S. A., and Thomas, G. J., Jr. (1999) Raman markers of nonaromatic side chains in an α-helix assembly: Ala, Asp, Glu, Gly, Ile, Leu, Lys, Ser, and Val residues of phage fd Subunits, Biochemistry 38, 4018-4027.
    • (1999) Biochemistry , vol.38 , pp. 4018-4027
    • Overman, S.A.1    Thomas Jr., G.J.2
  • 29
    • 4243468938 scopus 로고    scopus 로고
    • The cation-π interaction
    • Ma, J. C., and Dougherty, D. A. (1997) The cation-π interaction, Chem. Rev. 97, 1303-1324.
    • (1997) Chem. Rev. , vol.97 , pp. 1303-1324
    • Ma, J.C.1    Dougherty, D.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.