Phylogeny of Orchidantha (Lowiaceae) and the Zingiberales based on six DNA regions

Systematic Botany

Volumn 30, Issue 1, 2005, Pages 106-117

  Johansen, Louise B ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

LILIOPSIDA; LOWIACEAE; MAGNOLIOPHYTA; ORCHIDANTHA; ORCHIDANTHA CHINENSIS; ZINGIBERALES;

EID: 14244268201     PISSN: 03636445     EISSN: None     Source Type: Journal    
DOI: 10.1600/0363644053661931     Document Type: Article

References (69)

1. ASMUSSEN, C. B., W. J. BAKER, and J. DRANSFIELD. 2000. Phylogeny of the palm family (Arecaceae) based on rps16 intron and trnL-trnF plastid DNA sequences. Pp. 525-537 in Monocots: systematics and evolution, eds. K. L. Wilson and D. A. Morrison. Collingwood: CSIRO.
2. BALDWIN, B. G., M. J. SANDERSON, J. M. PORTER, M. F. WOJCIECHOWSKI, C. S. CAMPBELL, and M. J. DONOGHUE. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
3. BREMER, B., R. K. JANSEN, B. OXELMAN, M. BACKLUND, H. LANTZ, and K.-J. KIM. 1999. More characters or more taxa for a robust phylogeny - case study from the coffee family (Rubiaceae). Systematic Biology 48: 413-435.
4. BREMER, K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795-803.
5. BROWN, N. E. 1886. Orchidantha borneensis, a new genus of Scitaminae. Gardeners' Chronicle ns 26: 519.
6. CHASE, M. W., D. E. SOLTIS, P. S. SOLTIS, P. J. RUDALL, M. F. FAY, W. H. HAHN, S. SULLIVAN, J. JOSEPH, M. MOLVRAY, P. J. KORES, T. J. GIVNISH, K. J. SYSTMA, and C. PIRES. 2000. Higher-level systematics of the monocotyledons: an assessment of current knowledge and a new classification. Pp. 3-16 in Monocots: systematics and evolution, eds. K. L. Wilson and D. A. Morrison. Collingwood: CSIRO.
7. _, D. W. STEVENSON, P. WILKIN, and P. J. RUDALL. 1995. Monocot systematics: a combined analysis. Pp. 685-730 in Monocotyledons: systematics and evolution, eds. P. J. Rudall, P. J. Cribb, D. F. Cutler, and C. J. Humphries. London: Royal Botanic Gardens, Kew.
8. COÉNOUD, P., V. SAVOLAINEN, L. W. CHATROU, M. POWELL, R. J. GRAYER, and M. W. CHASE. 2002. Molecular phylogenetics of Caryophyllales based nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. American Journal of Botany 89: 132-144.
9. DAHLGREN, R. M. T. and F. N. RASMUSSEN. 1983. Monocotyledon evolution: characters and phylogenetic estimation. Evolutionary Biology 16: 255-395.
10. _, H. T. CLIFFORD, and P. F. YEO. 1985. The families of the monocotyledons. Structure, evolution and taxonomy. Berlin: Springer-Verlag.
11. DOYLE, J. J. and J. F. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
12. EERNISSE, D. J. and A. G. KLUGE. 1993. Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules, and morphology. Molecular Biology and Evolution 10: 1170-1195.
13. FARRIS, J. S. 1989. The retention index and the rescaled consistency index. Cladistics 5: 417-419.
14. _. 1997. XAC. Computer program and manual distributed by the author. Swedish Museum of Natural History, Stockholm, Sweden.
15. _, V. A. ALBERT, M. KÄLLERSJÖ, D. LIPSCOMB, and A. G. KLUGE. 1996. Parsimony jackknifing outperforms neighbour-joining. Cladistics 12: 99-124.
16. GIELLY, L. and P. TABERLET. 1994. The use of chloroplast DNA to resolve plant phylogenies: noncoding versus rbcL sequences. Molecular Biology and Evolution 11: 769-777.
17. GIVNISH, T. J., T. M. EVANS, J. C. PIRES, and K. J. SYSTMA. 1999. Polyphyly and convergent morphological evolution in Commelinales and Commelinidae: evidence from rbcL sequence data. Molecular Phylogenetics and Evolution 12: 360-385.
18. GRAVENDEEL, B., M. W. CHASE, E. F. DE VOGEL, M. C. ROOS, T. H. M. MES, and K. BACHMANN. 2001. Molecular phylogeny of Coelogyne (Epidendroideae; Orchidaceae) based on plastid RFLPs, matK, and nuclear ribosomal ITS sequences: evidence for polyphyly. American Journal of Botany 88: 1915-1927.
19. HALL, R. 1998. The plate tectonics of Cenozoic SE Asia and the distribution of land and sea. Pp. 99-131 in Biogeography and geological evolution of SE Asia, eds. R. Hall and J. D. Holloway. Leiden: Backhuys Publishers.
20. HOLTTUM, R. E. 1970. The genus Orchidantha (Lowiaceae). The Gardens' Bulletin Singapore 25: 239-246.
21. HUTCHINSON, J. 1934. The families of flowering plants, Vol. 2, Monocotyledons. London: Macmillan and Co.
22. _. 1959. The families of flowering plants, 2nd ed., Vol. 2, Monocotyledons. Oxford: Clarendon Press.
23. JENJITTIKUL, T. and K. LARSEN. 2002. Orchidantha foetida (Lowiaceae) a new species from Thailand. Nordic Journal of Botany 22: 405-408.
24. JOHNSON, L. A. and D. E. SOLTIS. 1994. MatK DNA sequences and phylogenetic reconstruction in Saxifragaceae s. s. Systematic Botany 19: 143-156.
25. KIRCHOFF, B. K. 1988. Floral ontogeny and evolution in the ginger group of the Zingiberales. Pp. 45-56 in Aspects of floral development, eds. P. Leins, S. C. Tucker, and P. K. Endress. Stuttgart: E. Schweizerbartsche Verlagbuchhandlung.
26. _. 1992. Ovary structure and anatomy in the Heliconiaceae and Musaceae (Zingiberales). Canadian Journal of Botany 70: 2490-2508.
27. _. 1997. Inflorescence and flower development in the Hedychieae (Zingiberaceae): Hedychium. Canadian Journal of Botany 75: 581-594.
28. _. 1998. Inflorescence and flower development in the Hedychieae (Zingiberaceae): Scaphoclamys kunstleri (Baker) Holtrum. International Journal of Plant Sciences 159: 261-274.
29. _ and H. KUNZE. 1995. Inflorescence and floral development in Orchidantha maxillarioides (Lowiaceae). International Journal of Plant Sciences 156: 159-171.
30. KRESS, W. J. 1990. The phylogeny and classification of the Zingiberales. Annals of the Missouri Botanical Garden 77: 698-721.
31. _. 1995. Phylogeny of the Zingiberanae: morphology and molecules. Pp. 443-460 in Monocotyledons: systematics and evolution, eds. P. J. Rudall, P. J. Cribb, D. F. Cutler, and C. J. Humphries. London: Royal Botanic Gardens, Kew.
32. _ and D. E. STONE. 1993. Morphology and floral biology of Phenakospermum (Strelitziaceae), an arborescent herb of the Neotropics. Biotropica 25: 290-300.
33. _, L. M. PRINCE, W. J. HAHN, and E. A. ZIMMER. 2001. Unraveling the evolutionary radiation of the families of the Zingiberales using morphological and molecular evidence. Systematic Biology 50: 926-944.
34. _, G. E. SCHATZ, M. ANDRIANIFAHANANA, and H. S. MORLAND. 1994. Pollination of Ravenala madagascariensis (Strelitziaceae) by lemurs: evidence for an archaic revolutionary system? American Journal of Botany 81: 542-551.
35. KRONESTEDT, E. and B. WALLES. 1986. Anatomy of the Strelitzia reginae flower (Strelitziaceae). Nordic Journal of Botany 6: 307-320.
36. LANE, I. E. 1955. General and generic relationships in Musaceae. Mitteilungen der Botanischen Staatssammlung München 2: 114-131.
37. LARSEN, K. 1961. A new species of Veratrum and Orchidantha from Thailand and Laos. Botanisk Tidskrift 56: 345-350.
38. _. 1973. A new species of Orchidantha (Lowiaceae) from Vietnam. Adansonia, ser. 2, 13: 481-482.
39. _. 1993. A new species of Orchidantha (Lowiaceae) from Borneo. Nordic Journal of Botany 13: 285-288.
40. MADDISON, W. P. and D. R. MADDISON. 1992. MacClade version 3.06. Analysis of phylogeny and character evolution. Sunderland: Sinauer Associates.
41. MEANS, A. R., J. S. TASH, and J. G. CHAFOULEAS. 1982. Physiological implications of the presence, distribution and regulation of CaM in eucariotic cells. Physiological Reviews 62: 1-39.
42. MILLER, J. T. and R. J. BAYER. 2001. Molecular phylogenetics of Acacia (Fabaceae: Mimosoideae) based on the chloroplast matK coding sequence and flanking trnK intron spacer regions. American Journal of Botany 88: 697-705.
43. MOSS, S. J. and M. E. J. WILSON. 1998. Biogeographic implications from the Tertiary palaeogeographic evolution of Sulawesi and Borneo. Pp. 133-163 in Biogeography and geological evolution of SE Asia, eds. R. Hall and J. D. Holloway. Leiden: Backhuys Publishers.
44. NAGAMASU, H. and S. SAKAI. 1999. Orchidantha inouei (Lowiaceae), a new species from Borneo. Nordic Journal of Botany 19: 149-152.
45. NAKAI, T. 1941. Notulae ad Plantas Asiae Orientalis (XVI). The Journal of Japanese Botany 17: 189-210.
46. NEWMAN, S. W. and B. K. KIRCHOFF. 1992. Ovary structure in the Costaceae (Zingiberales). International Journal of Plant Sciences 153: 471-487.
47. OXELMAN, B., M. LIDÉN, and D. BERGLUND. 1997. Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Systematics and Evolution 206: 393-410.
48. PEDERSEN, L. B. 2001. Four new species of Orchidantha (Lowiaceae) from Sabah. Nordic Journal of Botany 21: 121-128.
49. _. 2004. Phylogenetic analysis of the subfamily Alpinioideae (Zingiberaceae), particularly Etlingera Giseke, based on nuclear and plastid DNA. Plant Systematics and Evolution 245: 239-258.
50. _ and B. JOHANSEN. 2004. Anatomy of the unusual stigma in Orchidantha (Lowiaceae). American Journal of Botany 91: 299-305.
51. PETERSEN, O. G. 1889. Musaceae, Zingiberaceae, Cannaceae, Marantaceae. Pp. 1-43 in Die Natürlichen Pflanzenfamilien, 1st ed., Vol. 2, Part 6, eds. A. Engler and K. Prantl. Leipzig: Verlag von Wilhelm Engelmann.
52. POOVAIAH, B. W. and A. S. N. REDDY. 1987. Calcium Messenger system in plants. CRC Critical Reviews in Plant Sciences 6: 47-103.
53. RAMBAUT, A. 1996. Se-Al: Sequence Alignment Editor. Available at http://evolve.zoo.ox.ac.uk/.
54. RUDALL, P. J., D. W. STEVENSON, and P. LINDER. 1999. Structure and systematics of Hanguana, a monocotyledon of uncertain affinity. Australian Systematic Botany 12: 311-330.
55. SAKAI, S. and T. INOUE. 1999. A new pollination system: dung-beetle pollination discovered in Orchidantha inouei (Lowiaceae, Zingiberales) in Sarawak, Malaysia. American Journal of Botany 86: 56-61.
56. SAVOLAINEN, V., P. CUENOUD, R. SPICHIGER, M. D. P. MARTINEZ, M. CREVECOEUR, and J.-F. MANEN. 1995. The use of herbarium specimens in DNA phylogenetics: evaluation and improvement. Plant Systematics and Evolution 197: 87-98.
57. SCHUMANN, K. 1900. Musaceae. P. 13 in Das Pflanzenreich IV, Vol. 45, ed. A. Engler. Leipzig: Verlag von Wilhelm Engelmann.
58. SMITH, J. F., W. J. KRESS, and E. A. ZIMMER. 1993. Phylogenetic analysis of the Zingiberales based on rbcL sequences. Annals of the Missouri Botanical Garden 80: 620-630.
59. SOLTIS, D. E., P. S. SOLTIS, M. W. CHASE, M. E. MORT, D. C. ALBACH, M. ZANIS, V. SAVOLAINEN, W. H. HAHN, S. B. HOOT, M. F. FAY, M. AXTELL, S. M. SWENSEN, L M. PRINCE, W. J. KRESS, K. C. NIXON, and J. S. FARRIS. 2000. Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences. Botanical Journal of the Linnean Society 133: 381-461.
60. STEVENSON, D. W. and H. LOCONTE. 1995. Cladistic analysis of monocot families. Pp. 543-578 in Monocotyledons: systematics and evolution, eds. P. J. Rudall, P. J. Cribb, D. F. Cutler, and C. J. Humphries. London: Royal Botanic Gardens, Kew.
61. SWOFFORD, D. L. 2000. PAUP*. Phylogenetic analysis using parsimony (* and other methods), Version 4. Sunderland: Sinauer Associates.
62. TABERLET, P., L. GIELLY, G. PAUTOU, and J. BOUVET. 1991. Universal primers for amplification of three noncoding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
63. TOMLINSON, P. B. 1959. An anatomical approach to the classification of the Musaceae. Journal of the Linnean Society (Bot.) 55: 779-809.
64. _. 1962. Phylogeny of the Scitaminae - morphological and anatomical considerations. Evolution 16: 192-213.
65. _. 1969. Classification of the Zingiberales (Scitaminae) with special reference to anatomical evidence. Pp. 295-374 in Anatomy of the monocotyledons III Commelinales-Zingiberales, ed. C. R. Metcalfe. Oxford: Clarendon Press.
66. WHITE, T. J., T. BRUNS, S. LEE, and J. TAYLOR. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315-321 in PCR protocols: a guide to methods and applications, eds. M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White. San Diego: Academic Press.
67. WINKLER, H. 1930. Musaceae. Pp. 505-541 in Die Natürlichen Pflanzenfamilien. 2nd ed., 15a, eds. A. Engler and K. Prantl. Leipzig: Verlag von Wilhelm Engelmann.
68. ZIELINSKI, R. E. 1998. Calmodulin and calmodulin-binding proteins in plants. Annual Review of Plant Physiology and Plant Molecular Biobgy 49: 697-735.
69. _. 2002. Characterization of three new members of the Arabidopsis thaliana calmodulin gene family: conserved and highly diverged members of the gene family functionally complement a yeast calmodulin null. Planta 214: 446-455.