Structure analysis of PH1161 protein, a transcriptional activator TenA homologue from the hyperthermophilic archaeon Pyrococcus horikoshii

Acta Crystallographica Section D: Biological Crystallography

Volumn 60, Issue 6, 2004, Pages 1094-1100

  Itou, Hiroshi ^a,b   Yao, Min ^a   Watanabe, Nobuhisa ^a   Tanaka, Isao ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF GENETICS   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACILLUS SUBTILIS; BACTERIUM SUBTILIS; PYROCOCCUS HORIKOSHII;

HEME OXYGENASE; HEME OXYGENASE 1; LIGAND; TRANSACTIVATOR PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BACILLUS SUBTILIS; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; ELECTRON; METABOLISM; MOLECULAR GENETICS; POLYMERASE CHAIN REACTION; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; PYROCOCCUS HORIKOSHII; SEQUENCE HOMOLOGY; STATISTICAL MODEL; TEMPERATURE; TRANSACTIVATION;

AMINO ACID SEQUENCE; BACILLUS SUBTILIS; BINDING SITES; ELECTRONS; HEME OXYGENASE (DECYCLIZING); HEME OXYGENASE-1; LIGANDS; MODELS, MOLECULAR; MODELS, STATISTICAL; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; PYROCOCCUS HORIKOSHII; SEQUENCE HOMOLOGY, AMINO ACID; TEMPERATURE; TRANS-ACTIVATION (GENETICS); TRANS-ACTIVATORS;

EID: 14044250534     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444904008522     Document Type: Article

References (27)

1. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Nucleic Acids Res. 25, 3389-3401.
2. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, N., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
3. Cowtan, K. & Main, P. (1998). Acta Cryst. D54, 487-493.
4. Diederichs, K. & Karplus, P. A. (1997). Nature Struct. Biol. 4, 269-275.
5. Evans, P. R. (1997). Proceedings of the CCP4 Study Weekend. Recent Advances In Phasing, edited by K. S. Wilson, G. Davies, A. W. Ashton & S. Bailey, pp. 97-102. Warrington: Daresbury Laboratory.
6. Holm, L. & Sander, C. (1995). Trends Biochem. Sci. 20, 478-480.
7. Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. (1991). Acta Cryst. A47, 110-119.
8. Kawarabayasi, Y. et al. (1998). DNA Res. 5, 55-76.
9. Kraulis, P. J. (1991). J. Appl. Cryst. 24, 946-950.
10. La Fortelle, E. de & Bricogne, G. (1997). Methods Enzymol. 276, 472-494.
11. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
12. Leslie, A. G. W. (1993). Proceedings of the CCP4 Study Weekend. Data Collection and Processing, edited by N. Isaacs, L. Sawyer & S. Bailey, pp. 44-51. Warrington: Daresbury Laboratory.
13. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-197.
14. Merritt, E. A. & Bacon, D. J. (1997). Methods Enzymol. 277, 505-524.
15. Msadek, T., Kunst, F., Henner, D., Klier, A., Rapoport, G. & Dedonder, R. (1990). J. Bacteriol. 172, 824-834.
16. Navaza, J. (1994). Acta Cryst. A50, 157-163.
17. Nicholls, A., Sharp, K. A. & Honig, B. (1991). Proteins Struct. Funct. Genet. 11, 281-296.
18. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
19. Ouzounis, C. A. & Kyrpides, N. C. (1997). J. Mol. Evol. 45, 708-711.
20. Pang, A. H., Nathoo, S. & Wong, S. (1991). J. Bacteriol. 173, 46-54.
21. Schuller, D. J., Wilks, A., Ortiz De Montellano, P. R. & Poulous, T. L. (1999). Nature Struct. Biol. 6, 860-867.
22. Schuller, D. J., Zhu, W., Stojilkovic, I., Wilks, A. & Poulous, T. L. (2001). Biochemistry, 40, 11552-11558.
23. Stock, J. B., Ninfa, A. J. & Stock, A. M. (1989). Microbiol. Rev. 53, 450-490.
24. Sugishima, M., Omata, Y., Kakuta, Y., Sakamoto, H., Noguchi, M. & Fukuyama, K. (2000). FEBS Lett. 471, 61-66.
25. Sugishima, M., Sakamoto, H., Kakuta, Y., Omata, Y., Hayashi, S., Noguchi, M. & Fukuyama, K. (2002). Biochemistry, 41, 7293-7300.
26. Terwilliger, T. C. & Berendzen, J. (1999). Acta Cryst. D55, 849-861.
27. Weiss, M. S. (2001). J. Appl. Cryst. 34, 130-135.