A bio-physical coastal ecosystem model for assessing environmental effects of marine bivalve aquaculture

Ecological Modelling

Volumn 183, Issue 2-3, 2005, Pages 323-346

  Dowd, Michael ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

Author keywords

Aquaculture; Benthic pelagic coupling; Box model; Differential equations; Nutrient cycling; Regression

Indexed keywords

ECOSYSTEMS; ENVIRONMENTAL IMPACT; MARINE BIOLOGY; MATHEMATICAL MODELS; NUTRITION; OCEAN HABITATS; PLANTS (BOTANY);

BIO-PHYSICAL MARINE ECOSYSTEMS; BIOGEOCHEMICAL PROCESSES; BIVALVES; COASTAL EMBAYMENTS;

COASTAL ZONES;

BENTHIC-PELAGIC COUPLING; COASTAL WATER; ECOLOGICAL IMPACT; ECOSYSTEM MODELING; FOOD WEB; NUTRIENT CYCLING; SHELLFISH CULTURE;

BIVALVIA;

EID: 13844320990     PISSN: 03043800     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolmodel.2004.08.018     Document Type: Article

References (88)

1. A.E. Alpine, and J.E. Cloern Trophic interactions and direct physical effects control phytoplankton biomass and production in an estuary Limnol. Oceanogr. 37 1992 946 955
2. I. Barlund, and S. Tattari Ranking of parameters on the basis of their contribution to model uncertainty Ecol. Modell. 142 2001 11 23
3. D.L. Beres, and D.M. Hawkins Plackett-Burman technique for sensivity analysis of many parametered models Ecol. Modell. 141 2001 171 183
4. R.A. Berner An idealized model of dissolved sulphate distribution in recent sediments Geochim. Cosmochim. Acta 28 1964 1497 1503
5. B.P. Boudreau Diagenetic Models and Their Implementation. Modeling Transport and Reactions in Aquatic Sediments 1997 Springer Berlin 414
6. W.E. Boyce, and R.C. DiPrima Elementary Differential Equations and Boundary Value Problems 1986 John Wiley & Sons New York 654
7. V.E. Brando, R. Ceccarelli, S. Libralatos, and G. Ravagnan Assessment of environment management effects in a shallow water basin using mass balance models Ecol. Modell. 172 2004 213 232
8. J. Caperon Population growth in micro-organisms limited by food supply Ecology 48 1967 715 722
9. C.E.A. Carver, and A.L. Mallet Estimating the carrying capacity of a coastal inlet for mussel culture Aquaculture 88 1990 39 53
10. A. Chapelle, A. Ménesguen, J.-M. Deslous-Paoli, P. Souchu, N. Mazouni, A. Vaquer, and B. Millet Modelling nitrogen, primary production and oxygen in a Mediterranean lagoon. Impact of oysters farming and inputs from the watershed Ecol. Modell. 127 2000 161 181
11. J.E. Cloern Does the benthos control phytoplankton biomass in southern San Francisco Bay? Mar. Ecol. Prog. Ser. 9 1982 191 202
12. W.R. Congleton, B.R. Pearce, M.R. Parker, and B.F. Beal Mariculture siting: a GIS description of intertidal areas Ecol. Modell. 116 1999 63 75
13. Cranford, P., Dowd, M., Grant, J., Hargrave, B., McGladdery, S., 2002. Ecosystem level effects of marine bivalve aquaculture. In: Volume I: A scientific review of the potential environmental effects of aquaculture in aquatic acosystems. Canadian Technical Report of Fisheries and Aquatic Sciences, vol. 2450, pp. 51-84.
14. C.M. Crawford, C.K.A. MacLeod, and I.A. Mitchell Effects of shellfish farming on the benthic environment Aquaculture 224 2003 117 140
15. R.F. Dame, N. Dankers, T. Prins, H. Jongsma, and A. Smaal The influence of mussel beds on nutrients in the West Wadden Sea and Eastern Scheldt estuaries Estuaries 14 1991 130 138
16. R.F. Dame, and T.C. Prins Bivalve carrying capacity in coastal ecosystems Aquat. Ecol. 31 1998 409 421
17. M. Dowd On predicting the growth of cultured bivalves Ecol. Modell. 104 1997 113 131
18. M. Dowd Seston dynamics in a tidal embayment with shellfish aquaculture: a model study using tracer equations Estuarine Coast. Shelf Sci. 57 2003 523 537
19. M. Dowd, and R. Meyer A Bayesian approach to the ecosystem inverse problem Ecol. Modell. 168 2003 39 55
20. Dowd, M., Page, F., Losier, R., 2002. Time series analysis of temperature, salinity, chlorophyll and oxygen data from Tracadie Bay, PEI. Canadian Technical Report of Fisheries and Aquatic Sciences, vol. 2441, pp. 86.
21. Dowd, M., Page, F., Losier, R., McCurdy, P., Budgen, G., 2001. Physical oceanography of Tracadie Bay, PEI: Analysis of sea level, current, wind and drifter data. Canadian Technical Report of Fisheries and Aquatic Sciences, vol. 2347, pp. 80.
22. N.R. Draper, and H.S. Smith Applied Regression Analysis 1998 Wiley New York 706
23. P. Duarte, R. Meneses, A.J.S. Hawkins, M. Zhu, J. Fang, and J. Grant Mathematical modelling to assess the carrying capacity for multi-species culture within coastal waters Ecol. Modell. 168 2003 109 143
24. R.C. Dugdale Nutrient limitation in the sea: dynamics, identification and significance Limnol. Oceanogr. 12 1967 685 695
25. K. Edelvang, L.C. Lund-Hansen, C. Christiansen, O.S. Peterson, T. Uhrenholdt, M. Laima, and D.A. Berastegui Modelling suspended matter transport from the Oder River J. Coastal Res. 18 2002 62 74
26. A.M. Edwards Adding detritus to a nutrient-phytoplankton-zooplankton model: a dynamical systems approach J. Plankton Res. 23 2001 389 413
27. C.A. Edwards, T.A. Powell, and H.P. Batchelder The stability of an NPZ model subject to realistic levels of vertical mixing J. Mar. Res. 58 2000 37 60
28. R.W. Epply Temperature and phytoplankton growth in the sea Fish. Bull. 70 1972 1063 1085
29. G.T. Evans, and J.S. Parslow A model of annual plankton cycles Biol. Oceanogr. 3 1985 327 347
30. M.J.R. Fasham Modelling the marine biota M. Heimann The Global Carbon Cycle 1993 Spinger-Verlag Berlin 457 504
31. M.J.R. Fasham, H.W. Ducklow, and S.M. McKelvie A nitrogen based model of plankton dynamics in the oceanic mixed layer J. Mar. Res. 48 1990 591 639
32. H.B. Fischer, E.J. List, R.C.Y. Koh, J. Imberger, and N.H. Brooks Mixing in Inland and Coastal Waters 1979 Academic Press New York 483
33. P.J.S. Franks, J.S. Wroblewski, and G.R. Flierl Behaviour of a simple plankton model with food-level acclimation by herbivores Mar. Biol. 91 1986 121 129
34. M. Fréchette, C.A. Butman, and W.R. Geyer The importance of boundary layer flow processes in supplying phytoplankton to the benthic suspension feeder Mytilus edulis L Limnol. Oceanogr. 34 1989 19 36
35. B.W. Frost A threshold feeding behaviour in Calanus pacificus Limnol. Oceanogr. 20 1975 259 262
36. C.W. Gardiner Handbook of Stochastic Methods 1997 Springer Berlin 442
37. P.E. Gill, W.E. Murray, and M.H. Wright Practical Optimization 1986 Academic Press London 401
38. J. Grant, A. Hatcher, D.B. Scott, P. Pocklington, C.T. Schafer, and C. Honig A multidisciplinary approach to evaluating benthic impacts of shellfish aquaculture Estuaries 18 1995 124 144
39. Gregory, D., Petrie, B., Jordan, F., Langille, P., 1993. Oceanographic, geographic, and hydrological parameters of Scotia-Fundy and southern Gulf of St. Lawrence inlets. Canadian Technical Report of Hydrography and Ocean Sciences, vol. 143, pp. 248.
40. C.L. Griffiths, and R.J. Griffiths Bivalvia T.J. Pandian F.J. Vernberg Animal Energetics. Bivalvia through Reptilia Vol. 2 1987 Academic Press New York 2 87
41. B.T. Hargrave Particle sedimentation in the ocean Ecol. Modell. 30 1985 229 246
42. M.P. Hassell The Dynamics of Arthropod Predator-Prey Systems 1978 Princeton University Press Princeton 237
43. A. Hatcher, J. Grant, and B. Schofield Effects of suspended mussel culture (Mytilus spp.) on sedimentation, benthic respiration and sediment nutrient dynamics in a coastal bay Mar. Ecol. Prog. Ser. 115 1994 219 235
44. C.H.R. Heip, N.K. Goosen, P.M.J. Herman, J. Kromkamp, J.J. Middleburg, and K. Soetaert Production and consumption of biological particles in temperate tidal estuaries Oceanogr. Mar. Biol.: Annu. Rev. 33 1995 1 149
45. C. Hily Is the activity of benthic suspension feeders a factor controlling water quality in the Bay of Brest? Mar. Ecol. Prog. Ser. 69 1991 179 188
46. E.E. Hofmann, and C.M. Lascara Overview of interdisciplinary modeling for marine ecosystems K.H. Brink A.R. Robinson The Sea: Ideas and Observations on Progress in the Study of the Seas. Volume 10: The Global Coastal Ocean: Processes and Methods 1998 Wiley New York
47. C.S. Holling The components of predation as revealed by a study of small mammal predation of the European pine sawfly Can. Entomol. 91 1959 293 320
48. L.S. Incze, R.A. Lutz, and E. True Modeling carrying capacities for bivalve molluscs in open suspended-culture systems J. World Maricult. Soc. 12 1981 143 155
49. C.G. Jones, J.H. Lawton, and M. Shachak Organisms as ecosystem engineers Oikos 69 1994 373 386
50. R. Jones, and E.W. Henderson The dynamics of nutrient regeneration and simulation studies of the nutrient cycle Journal du Conseil 43 1986 216 236
51. S.E. Jorgensen Fundamentals of Ecological Modelling 1994 Elsevier Amsterdam 687
52. E. Kalnay, M. Kanamitsu, R. Kistler, W. Collins, D. Deaven, L. Gandin, M. Iredell, S. Saha, G. White, J. Woollen, Y. Zhu, M. Chelliah, W. Ebisuzaki, W. Higgins, J. Janowiak, K.C. Mo, C. Ropelewski, J. Wang, A. Leetmaa, R. Reynolds, R. Jenne, and D. Joseph The NCEP/NCAR 40 year reanalysis project Bull. Am. Meteorol. Soc. 77 1996 431 437
53. H.F. Kaspar, P.A. Gillespie, I.C. Boyer, and A.L. MacKenzie Effects of mussel aquaculture on the nitrogen cycle and benthic communities in Kenepuru Sound, Marlborough Sound, New Zealand Mar. Biol. 85 1985 127 136
54. W.M. Kemp, M.T. Brooks, and R.R. Hood Nutrient enrichment, habitat variability and trophic transfer efficiency in simple models of pelagic ecosystems Mar. Ecol. Prog. Ser. 223 2001 73 87
55. M.J. Kishi, M. Uchiyama, and Y. Iwata Numerical simulation model for quantitative management of aquaculture Ecol. Modell. 72 1994 21 40
56. J. Kremer, and S.W. Nixon A Coastal Marine Ecosystem: Simulation and Analysis 1978 Springer-Verlag New York 217
57. O. Le Pape, F. Jean, and A. Ménesguen Pelagic and benthic trophic chain coupling in a semi-enclosed coastal system, the Bay of Brest (France): a modelling approach Mar. Ecol. Prog. Ser. 189 1999 135 147
58. G. Marion, E. Renshaw, and G. Gibson Stochastic modelling of environmental variation for biological populations Theor. Popul. Biol. 57 2000 197 217
59. S. Marsili-Libelli, S. Guerrizio, and N. Checchi Confidence regions of estimated parameters for ecological systems Ecol. Modell. 165 2003 127 146
60. J.J. Middleburg, K. Soetart, and P.M.J. Herman Empirical relationships for use in global diagenetic models Deep Sea Res. 44 1997 327 344
61. M.B. New Global aquaculture: current trends and challenges for the 21st century World Aquacult. 30 1999 8 13
62. F.H. Nichols Increased benthic grazing: an alternative explanation for low phytoplankton biomass in northern San Francisco Bay during the 1976-1977 drought Estuarine Coastal Shelf Sci. 21 1985 379 388
63. F.H. Nichols, J.K. Thompson, and L.E. Schemel Remarkable invasion of San Francisco Bay (California, USA) by the Asian clam Potamocorbula amurensis. II. Displacement of a former community Mar. Ecol. Prog. Ser. 66 1990 95 101
64. R.M. Nisbet, S. Diehl, W.G. Wilson, S.D. Cooper, D.D. Donaldson, and K. Kratz Primary productivity gradients and short-term population dynamics in open systems Ecol. Monogr. 67 4 1997 535 553
65. F. Noren, J. Haamer, and O. Lindahl Changes in the plankton community passing a Mytilus edulis bed Mar. Ecol. Prog. Ser. 19 1999 187 194
66. M. Omlin, R. Brun, and P. Reichert Biogeochemical model of Lake Zurich: sensitivity, identifiability and uncertainty analysis Ecol. Modell. 141 2001 105 123
67. F. Page, D. Greenberg, G. Bugden, R. Losier, J. Shore, E. Horne, S. Robinson, B. Chang, and T. Sephton Oceanographic component of the Canadian Department of Fisheries and Oceans science strategic research program on Coastal Oceanography for Sustainable Aquaculture Development (COSAD) Bull. Aquacult. Assoc. Can. 99-2 1999 14 16
68. T.R. Parsons, M. Takahashi, and B. Hargrave Biological Oceanographic Process. 1977 Permagon Oxford 220
69. R. Pastres, C. Solidoro, G. Cossarini, D. Melaku Canu, and C. Dejak Managing the rearing of Tapes philippinarum in the lagoon of Venice: a decision support system Ecol. Modell. 138 2001 231 245
70. R.W. Penney, C.H. McKenzie, and T.J. Mills Assessment of the particulate food supply available for mussel (Mytilus spp.) farming in a semi-enclosed northern inlet Estuarine Coastal Shelf Sci. 53 2001 107 121
71. T. Platt, C.G. Gallegos, and W.G. Harrison Photoinhibition of photosynthesis in natural assembalges of marine phytoplankton J. Mar. Res. 38 1980 687 701
72. T. Platt, and A.D. Jassby The relationship between photosynthesis and light for natural assemblages of coastal marine phytoplankton J. Phycol. 12 1976 421 430
73. W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flannery Numerical Recipes in Fortran 90 1996 Cambridge University Press Cambridge 576
74. O. Raillard, and A. Ménesguen An ecosystem box model for estimating the carrying capacity of a macrotidal shellfish ecosystem Mar. Ecol. Process Ser. 115 1994 117 130
75. G.A. Riley A theoretical analysis of the zooplankton population on Georges Bank J. Mar. Res. 6 1947 104 113
76. R. Seed Mussels: space monopolisers or ecosystem engineers J. Shellfish Res. 19 2000 611 612
77. K. Soetaert, J.J. Middelburg, P.M.J. Herman, and K. Buis On the coupling of benthic and pelagic biogeochemical models Earth Sci. Rev. 51 2000 173 201
78. C. Solidoro, D. Melaku Canu, and R. Rossi Ecological and economic considerations on fishing and rearing of Tapes phillipinarum in the lagoon of Venice Ecol. Modell. 170 2003 303 318
79. C. Solidoro, R. Pastres, D. Melaku Canu, M. Pellizzato, and R. Rossi Modelling the growth of Tapes philippinarum in northern Adriatic lagoons Mar. Ecol. Prog. Ser. 199 2000 137 148
80. J.H. Steele, and E.W. Henderson A simple plankton model Am. Nat. 117 1981 676 691
81. L. Stone, A. Grbric, and T. Berman Ecosystem resilience, stability and productivity: seeking a relationship Am. Nat. 108 1996 892 903
82. H. Takeoka Fundamental concepts of exchange and transport time scales in a coastal sea Continental Shelf Res. 3 1984 311 326
83. K.R. Thompson, M. Dowd, Y. Shen, and D.A. Greenberg Probabilistic characterization of mixing in a coastal embayment: A Markov chain approach Continental Shelf Res. 22 2002 1063 1614
84. R.E. Ulanowicz, and J.H. Tuttle The trophic consequences of oyster stock rehabilitation in Chesapeake Bay Estuaries 15 1992 298 306
85. J.J. Vallino Improving marine ecosystem models: use of data assimilation and mesocosm experiments J. Mar. Res. 58 2000 117 164
86. J.J. Waniek The role of physical forcing in initiation of spring blooms in the northeast Atlantic J. Mar. Syst. 39 2003 57 82
87. J. Widdows, M.D. Brinsley, P.N. Salkeld, and M. Elliott Use of annular flumes to determine the influence of current velocity and bivalves on material flux at the sediment-water interface Estuaries 21 1998 552 559
88. J. Wu, and D. Marceau Modelling complex ecological systems: an introduction Ecol. Modell. 153 2002 1 6