Interference, fluctuation, and alternation of electron tunneling in protein media. 1. Two tunneling routes in photosynthetic reaction center alternate due to thermal fluctuation of protein conformation

Journal of Physical Chemistry B

Volumn 109, Issue 5, 2005, Pages 1978-1987

  Nishioka, Hirotaka ^a   Kimura, Akihiro ^a   Yamato, Takahisa ^a   Kawatsu, Tsutomu ^b   Kakitani, Toshiaki ^c  

^a NAGOYA UNIVERSITY   (Japan)

^b DUKE UNIVERSITY   (United States)

^c MEIJO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ELECTRON TRANSFER; PROTEIN CONFORMATION; THERMAL FLUCTUATION; TUNNELING ROUTES;

APPROXIMATION THEORY; BACTERIA; COMPUTER SIMULATION; CONFORMATIONS; ELECTRON ENERGY LEVELS; ELECTRONIC STRUCTURE; MOLECULAR DYNAMICS; PHOTOSYNTHESIS; PROTEINS;

ELECTRON TUNNELING;

PROTEIN; TRYPTOPHAN;

ARTICLE; CHEMICAL MODEL; CHEMISTRY; ELECTRON; HEAT; METABOLISM; METHODOLOGY; PHOTOSYNTHESIS; PHYSICAL CHEMISTRY; PROTEIN CONFORMATION; RHODOBACTER SPHAEROIDES; STATISTICAL MODEL; TIME;

CHEMISTRY, PHYSICAL; ELECTRONS; HEAT; HOT TEMPERATURE; MODELS, CHEMICAL; MODELS, STATISTICAL; PHOTOSYNTHESIS; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PROTEIN CONFORMATION; PROTEINS; RHODOBACTER SPHAEROIDES; TIME FACTORS; TRYPTOPHAN;

EID: 13544270860     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp046282x     Document Type: Article

References (51)

1. Devault, D. Quantum Mechanical Tunneling in Biological Systems; Cambridge University Press: Cambridge, 1984.
2. Marcus, R. A.; Sutin, N. Biochim. Biophys. Acta 1985, 811, 265.
3. Siddarth, P.; Marcus, R. A. J. Phys. Chem. 1990, 94, 8430.
4. Siddarth, P.; Marcus, R. A. J. Phys. Chem. 1992, 96, 3213.
5. Siddarth, P.; Marcus, R. A. J. Phys. Chem. 1993, 97, 13078.
6. Newton, M. D. Chem. Rev. 1991, 91, 767.
7. Skourtis, S. S.; Beratan, D. N. Electron Transfer: From Isolated Molecules to Biomoleculcs; Jortner, J., Bixon, M., Eds.; John Wiley & Sons: New York, 1999; part 1, p 377.
8. Stuchebrukhov, A. A. J. Chem. Phys. 1996, 105, 10819.
9. Stuchebrukhov, A. A. J. Chem. Phys. 1997, 107, 6495.
10. Gehlen, J. N.; Daizadeh, I.; Stuchebrukhov, A. A.; Marcus, R. A. Inorg. Chim. Acta 1996, 243, 271.
11. Okada, A.; Kakitani, T.; Inoue, J. J. Phys. Chem. 1995, 99, 2946.
12. Stuchebrukhov, A. A. Advances, in Chemical Physics; Prigogine, I., Rice, S. A., Eds.; John Wiley & Sons: New York, 2001; Vol. 118, p 1.
13. Kawatsu, T.; Kakitani, T.; Yamato, T. J. Phys. Chem. B 2002, 106, 5068.
14. Beratan, D. N.; Onuchic, J. N.; Hopfield, J. J. J. Chem. Phys. 1987, 86, 4488.
15. Onuchic, J. N.; Beratan, D. N.; Winkler, J. R.; Gray, H. B. Annu. Rev. Biophys. Biomol. Struct. 1992, 21, 349.
16. Betts, J. N.; Beratan, D. N.; Onuchic, J. N. J. Am. Chem. Soc. 1992, 114, 4043.
17. Regan, J. J.; Bilio, A. J. D.; Langen, R.; Skov, L. K.; Winkler, J. R.; Gray, H. B.; Onuchic, J. N. Chem. Biol. 1995, 2, 489.
18. Regan, J. J.; Onuchic, J. N. Electron Transfer: From Isolated Molecules to Biomolecules; Jortner, J., Bixon, M., Eds.; John Wiley & Sons: New York, 1999; part 2, p 467.
19. de Andrade, P. C. P.; Onuchic, J. N. J. Chem. Phys. 1998, 108, 4292.
20. Stuchebrukhov, A. A. J. Chem. Phys. 1996, 104, 8424.
21. Stuchebrukhov, A. A. J. Chem. Phys. 1998, 108, 8499.
22. Stuchebrukhov, A. A. J. Chem. Phys. 1998, 108, 8510.
23. Kawatsu, T.; Kakitani, T.; Yamato, T. J. Phys. Chem. B 2001, 105, 4424.
24. Daizadeh, I.; Medvedev, E. S-; Stuchebrukhov, A. A. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 3703.
25. Antony. J.; Medvedev, E. S.; Stuchebrukhov, A. A. J. Am. Chem. Soc. 2000, 122, 1057.
26. Wolfgang, J.; Risser, S. M.; Priyadarshy, S.; Beratan, D. N. J. Phys. Chem. B 1997, 101, 2986.
27. Aquino, A. J. A.; Beroza, P.; Reagan, J. J.; Onuchic, J. N. Chem. Phys. Lett. 1997, 275, 181.
28. Balabin, I. A.; Onuchic, J. N. Science 2000, 290, 114.
29. Xie, Q.; Archontis, G.; Skourtis, S. S. Chem. Phys. Lett. 1997, 312, 237.
30. Kawatsu, T.; Kakitani, T.; Yamato, T. J. Phys. Chem. B 2002, 106, 11356.
31. Kobayashi, C.; Baldrige, K.; Onuchic, J. N. J. Chem. Phys. 2003, 119, 3550.
32. Tan, M.-L.; Balabin, I. A.; Onuchic, J. N. Bio. Phys. 2004, 86, 1813.
33. Stowell, M. H. B.; McPhillips, T. M.; Rees, D. C.; Solus S. M.; Abresch, E.; Feher, G. Science 1997, 276, 812.
34. Saito, M. Mol. Simul. 1992, 8, 321.
35. Morikami, K.; Nakai, T.; Kidera, A.; Saito, M.; Nakamura, H. Comput. Chem. 1992, 16, 243 (PRESTO, a vectorized molecular mechanics program for biopolymers).
36. Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M., Jr.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179.
37. Howell, J-; Rossi, A.; Wallace, D.; Baratt, K.; Hoffmann, R. QCPE 1977, 11, 344 (FORTICON8, extended Hückel method program).
38. Kincaid, D. R.; Respess, J. R.; Young, D. M.; Grimes, R. G. ITPACK 2C: University of Texas: Austin, TX, 1999 (a fortran package for solving a large sparse linear system by adaptive accelerated iterative methods).
39. Stewart, J. J. P. J. Comput. Chem. 1989, 10, 209.
40. Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Zakrzewski, V. G.; Montgomery, J. A., Jr.; Stratmann, R. E.; Burant, J. C.; Dapprich, S.; Millam, J. M.; Daniels, A. D.; Kudin, K. N.; Strain, M. C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi, R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.; Petersson, G. A.; Ayala, P. Y.; Cui, Q.; Morokuma, K.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Cioslowski, J.; Ortiz, J. V.; Baboul. A. G.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, L; Gomperts, R. ; Martin, R L.; Fox, D. J.; Keith, T.; AlLaham, M. A.; Peng, C. Y.; Nanayaldcara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Andres, J. L.; Gonzalez, C.; Head-Gordon, M.; Replogle, E. S.; Pople, J. A. Gaussian 98, revision A.9; Gaussian, Inc.: Pittsburgh, PA, 1998.
41. Stuchebrukhov, A. A. Chem. Phys. Lett. 1994, 225, 55.
42. Stuchebrukhov, A. A.; Marcus, R. A. J. Phys. Chem. 1995, 99, 7581.
43. Kawatsu, T.; Kakitani, T.; Yamato, T. Inorg. Chim. Acta 1997, 300-302, 862.
44. Humphrey, W. F.; Dalke, A.; Schulten, K. J. J. Mol. Graphics 1996, 14, 33.
45. Schwanz, B. J.; Bittner, E. R.; Prezhdo, O. V.; Rossky, P. J. J. Chem. Phys. 1996, 104, 5942.
46. Prezhdo, O. V.; Rossky, P. J. J. Chem. Phys. 1997, 107, 5863.
47. Moser, C. C; Keske, J. M.; Warnucke, K.; Farid, R. S.; Dutton, P. L. Nature 1992, 355, 796.
48. Page, C. C.; Moser C. C.; Chen, X.; Dutton, P. L. Nature 1999, 402, 47.
49. Gray, H. B.; Winkler, J. R. Annu. Rev. Biochem. 1996, 65, 537.
50. Deisenhofer, J.; Epp, O.; Sinning, I.; Michel, H. J. Mol. Biol. 1995, 246, 429.
51. Ferreira, K. N.; Iverson, T. M.; Maghlaoui, K.; Barber, J.; Iwata, S. Science 2004, 303, 1831.