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Volumn 20, Issue SUPPL. 1, 2004, Pages

Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy

Author keywords

[No Author keywords available]

Indexed keywords

UNTRANSLATED RNA;

EID: 13444287763     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth925     Document Type: Conference Paper
Times cited : (50)

References (26)
  • 3
    • 0031438685 scopus 로고    scopus 로고
    • Searching for patterns in genomic data
    • Dsouza, M., Larsen, N. and Overbeek, R. (1997) Searching for patterns in genomic data. Trends Genet., 13, 497-498.
    • (1997) Trends Genet. , vol.13 , pp. 497-498
    • Dsouza, M.1    Larsen, N.2    Overbeek, R.3
  • 5
    • 0037133945 scopus 로고    scopus 로고
    • Computational genomics of noncoding RNA genes
    • Eddy, S.R. (2002) Computational genomics of noncoding RNA genes. Cell, 109, 137-140.
    • (2002) Cell , vol.109 , pp. 137-140
    • Eddy, S.R.1
  • 7
    • 0028272315 scopus 로고
    • RNA sequence analysis using covariance models
    • Eddy, S.R. and Durbin, R. (1994) RNA sequence analysis using covariance models. Nucleic Acids Res., 22, 2079-2088.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2079-2088
    • Eddy, S.R.1    Durbin, R.2
  • 9
    • 0025864008 scopus 로고
    • Identifying potential tRNA genes in genomic DNA sequences
    • Fichant, G. and Burks, C. (1991) Identifying potential tRNA genes in genomic DNA sequences. J. Mol. Biol., 220, 659-671.
    • (1991) J. Mol. Biol. , vol.220 , pp. 659-671
    • Fichant, G.1    Burks, C.2
  • 10
    • 0035834489 scopus 로고    scopus 로고
    • Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
    • Gautheret, D. and Lambert, A. (2001) Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. J. Mol. Biol., 313, 1003-1011.
    • (2001) J. Mol. Biol. , vol.313 , pp. 1003-1011
    • Gautheret, D.1    Lambert, A.2
  • 11
    • 0037112006 scopus 로고    scopus 로고
    • Stealth regulation: Biological circuits with small RNA switches
    • Gottesman, S. (2002) Stealth regulation: biological circuits with small RNA switches. Genes Dev., 16, 2829-2842.
    • (2002) Genes Dev. , vol.16 , pp. 2829-2842
    • Gottesman, S.1
  • 13
    • 0041620253 scopus 로고    scopus 로고
    • PatSearch: A program for the detection of patterns and structural motifs in nucleotide sequences
    • Grillo, G., Licciulli, F., Liuni, S., Sbisà, E. and Pesole, G. (2003) PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. Nucleic Acids Res., 31, 3608-3612.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3608-3612
    • Grillo, G.1    Licciulli, F.2    Liuni, S.3    Sbisà, E.4    Pesole, G.5
  • 14
    • 0036899930 scopus 로고    scopus 로고
    • RNomics: Identification and function of small, non-messenger RNAs
    • Huttenhofer, A., Brosius, J. and Bachellerie, J.-P. (2002) RNomics: identification and function of small, non-messenger RNAs. Curr. Opin. Chem. Biol., 6, 835-843.
    • (2002) Curr. Opin. Chem. Biol. , vol.6 , pp. 835-843
    • Huttenhofer, A.1    Brosius, J.2    Bachellerie, J.-P.3
  • 15
    • 0037147179 scopus 로고    scopus 로고
    • Breakthrough of the year
    • Kennedy, D. (2002) Breakthrough of the year. Science, 298, 2283.
    • (2002) Science , vol.298 , pp. 2283
    • Kennedy, D.1
  • 16
    • 0037381618 scopus 로고    scopus 로고
    • RNA sensors and riboswitches: Self-regulating messages
    • Lai, E.C. (2003) RNA sensors and riboswitches: self-regulating messages. Curr. Biol., 13, R285-R291.
    • (2003) Curr. Biol. , vol.13
    • Lai, E.C.1
  • 18
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. and Eddy, S.R. (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res., 25, 955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.1    Eddy, S.R.2
  • 19
    • 0033582628 scopus 로고    scopus 로고
    • A computational screen for methylation guide snoRNAs in yeast
    • Lowe, T.M. and Eddy, S.R. (1999)A computational screen for methylation guide snoRNAs in yeast. Science, 283, 1168-1171.
    • (1999) Science , vol.283 , pp. 1168-1171
    • Lowe, T.M.1    Eddy, S.R.2
  • 21
    • 0028214356 scopus 로고
    • Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions
    • Pavesi, A., Conterio, F., Bolchi, A., Dieci, G. and Ottonello, S. (1994) Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions. Nucleic Acids Res., 22, 1247-1256.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1247-1256
    • Pavesi, A.1    Conterio, F.2    Bolchi, A.3    Dieci, G.4    Ottonello, S.5
  • 22
    • 0037123632 scopus 로고    scopus 로고
    • An expanding universe of noncoding RNAs
    • Storz, G. (2002) An expanding universe of noncoding RNAs. Science, 296, 1260-1263.
    • (2002) Science , vol.296 , pp. 1260-1263
    • Storz, G.1
  • 23
    • 0347418195 scopus 로고    scopus 로고
    • Riboswitches: The oldest mechanism for the regulation of gene expression?
    • Vitreschak, A.G., Rodionov, D.A., Mironov, A.A. and Gelfand, M.S. (2004) Riboswitches: the oldest mechanism for the regulation of gene expression? Trends Genet., 20, 44-50.
    • (2004) Trends Genet. , vol.20 , pp. 44-50
    • Vitreschak, A.G.1    Rodionov, D.A.2    Mironov, A.A.3    Gelfand, M.S.4
  • 24
    • 0036575444 scopus 로고    scopus 로고
    • Antisense RNAs everywhere?
    • Wagner, E. and Flardh, K. (2002) Antisense RNAs everywhere? Trends Genet., 18, 223-226.
    • (2002) Trends Genet. , vol.18 , pp. 223-226
    • Wagner, E.1    Flardh, K.2
  • 26
    • 0142075327 scopus 로고    scopus 로고
    • Genetic control by metabolite-binding riboswitches
    • Winkler, W.C. and Breaker, R.R. (2003) Genetic control by metabolite-binding riboswitches. Chembiochem., 4, 1024-1032.
    • (2003) Chembiochem. , vol.4 , pp. 1024-1032
    • Winkler, W.C.1    Breaker, R.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.